Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:4685420-4687504[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0028 0.078 14.0 3.3 2 23 16 38 15 38 0.93

2 19 0.00015 0.0042 18.0 4.8 1 23 43 66 43 66 0.96

3 19 0.11 3 9.0 4.4 1 23 72 94 72 94 0.96

4 19 0.0001 0.0029 18.5 0.2 3 23 102 122 101 122 0.97

5 19 1.2e-06 3.3e-05 24.6 0.8 2 23 128 149 128 149 0.98

6 19 0.0032 0.088 13.9 1.9 1 23 158 181 158 181 0.97

7 19 0.024 0.67 11.1 0.4 1 23 187 209 187 209 0.96

8 19 1.6e-05 0.00045 21.1 0.5 1 23 215 237 215 237 0.97

9 19 3.8e-07 1e-05 26.2 1.2 1 23 243 265 243 265 0.99

10 19 1.5e-05 0.0004 21.2 0.3 1 23 271 294 271 294 0.97

11 19 0.033 0.9 10.7 4.3 1 23 300 322 300 322 0.96

12 19 0.011 0.31 12.1 4.1 1 23 328 350 328 350 0.97

13 19 3.4e-05 0.00094 20.1 1.2 3 23 358 378 356 378 0.95

14 19 7.4e-06 0.0002 22.1 0.8 2 23 384 405 384 405 0.98

15 19 1.3e-05 0.00035 21.4 0.8 2 23 413 435 412 435 0.95

16 19 0.023 0.64 11.1 0.5 1 23 441 463 441 463 0.96

17 19 3.2e-06 8.7e-05 23.3 3.3 1 23 469 491 469 491 0.98

18 19 5.3e-08 1.4e-06 28.9 0.8 1 23 497 519 497 519 0.98

19 19 2.1e-05 0.00056 20.8 1.6 1 23 525 547 525 547 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0028	0.078	14.0	3.3	2	23	16	38	15	38	0.93
2	19	0.00015	0.0042	18.0	4.8	1	23	43	66	43	66	0.96
3	19	0.11	3	9.0	4.4	1	23	72	94	72	94	0.96
4	19	0.0001	0.0029	18.5	0.2	3	23	102	122	101	122	0.97
5	19	1.2e-06	3.3e-05	24.6	0.8	2	23	128	149	128	149	0.98
6	19	0.0032	0.088	13.9	1.9	1	23	158	181	158	181	0.97
7	19	0.024	0.67	11.1	0.4	1	23	187	209	187	209	0.96
8	19	1.6e-05	0.00045	21.1	0.5	1	23	215	237	215	237	0.97
9	19	3.8e-07	1e-05	26.2	1.2	1	23	243	265	243	265	0.99
10	19	1.5e-05	0.0004	21.2	0.3	1	23	271	294	271	294	0.97
11	19	0.033	0.9	10.7	4.3	1	23	300	322	300	322	0.96
12	19	0.011	0.31	12.1	4.1	1	23	328	350	328	350	0.97
13	19	3.4e-05	0.00094	20.1	1.2	3	23	358	378	356	378	0.95
14	19	7.4e-06	0.0002	22.1	0.8	2	23	384	405	384	405	0.98
15	19	1.3e-05	0.00035	21.4	0.8	2	23	413	435	412	435	0.95
16	19	0.023	0.64	11.1	0.5	1	23	441	463	441	463	0.96
17	19	3.2e-06	8.7e-05	23.3	3.3	1	23	469	491	469	491	0.98
18	19	5.3e-08	1.4e-06	28.9	0.8	1	23	497	519	497	519	0.98
19	19	2.1e-05	0.00056	20.8	1.6	1	23	525	547	525	547	0.98

Sequence Information

Coding Sequence: ATGGTAATCCATCGTAGGCAAATGCACACTCACGAAAAACCTTGCGTttgtgacgtttgcaaaaaatcgttttataGCGACGTACATTTGCGAAGACATAACAACATCGTCCACCCAGTTCAAAGACATTCGTGTGGCACTTGTTCGCgaacatttaaaacaaaatcgcAACTTACAGTGCACACAAAATCAAAACACACCAAAATTCGCGACCACGCTTGTGACGTTTGCAGTTACACGTgcgtaaataaaagtttgttagACTATCACAAGAAGCGTCACGTTAAAGATTACGCAGCCTTTTGTCAGGTTTGCGGAAAGGGTTTCTATAGGCCGGGCGATTTAAACGGTCACATGTTCAAACATAGGTCCGACAAACCCAAATGCGAGTTTTGCGGGAAAACTTATAGCAGTGAACCGGATTTGAAAAGACACATTCGTACTCACAACCCTAATTATAAAGAAGTCAAATTTCCGTGCGGTTCGTGTTCTAAGTCGTTTTCATGCGCTCGCAATTTGAAAAATCACACGCGAGTTGCTCACCTGAATCAAAGTTTGTTTGTCTGCGATACTTGTGGCAGGGGCTTTAATTCCGATACAGGCTTCGATCTGCATAAAAAGATACATACGGGCGTTAAACCTTTTGCTTGCAAACTGTGTGATAAAATGTTTGCTCAAAGGAAGATGCTTCAGGTTCACGAACGCGTGCATACCGGGGAAAAACCGTACCAGTGCAAGGAGTGCGATAAACAGTTTACACAGCGAAGCTCCCTTGTCGTGCACACGAGGATTCATACCAATGAAAGACCATTTGTCtgtgacgtttgcaataaaTCGTTTCGAAGTAACGGTATGCTGTCGTCCCACGTGTCGACAGTACATTCAAACGAATATCCGTTTTCGTGCACGACGTGCAAGCGTAATTTTAAGGCGAAACACAATTATTTGAGTCATCTCGAGTTGCACAGTGTCGAAAAGAAACACGTTTGCGATATTTGCGGTTTTTcgtgttttcagaaaaaagcTCTCTCTAAACATAGTAAAGTGCACAACAAAGATTCCCTGTTGTTCTGTGAAATTTGCGGTAAGAGTTTTTATTACAAGAGCGATCTGATTTCGCACAAATTTAAACACAGAGAGGATAAACCGAAATGCGAATTTTGCGGTAAAACTTATAGTTATGAAGGCGATTTGAAACGACACGTCCGATCGCACGATCCgaattataaacacaataagTGCGAGTCATGCGACAAGTCGTTTTCGACGGCTCGTAATCTAAAAAATCACGTCCTCGTCACGCACTTGGACAAGAAACTGTTCATTTGCGATACGTGCGGTAGAGGGTTCAAGTCGGATACCGGTTTCGATTTACATAAGAAAATTCATTCGGGCGAAAAACCGTTTTCGTGTCAGCACTGCGATAAGTCGTTCCCGCAAAAGAAAATGCTTCAAGTCCACGAACGGACGCACACCGGCGAGAGACCTTATGAGTGTAAGGAATGCGGGAAACGTTTCACGCAACGAAGTTCTCTTGCCGTGCATATTAGATACCACACGGGTGAAAGGCCATATCCTTGCCATTTGTGTACTAAGGCGTTCGTTACAAGAACACTGTTGAACACTCATCTCAAAGTTCACGGTTTAGCTCTCTCTAATCCAAACACTTTACAGTCTCGTTAA
Protein Sequence: MVIHRRQMHTHEKPCVCDVCKKSFYSDVHLRRHNNIVHPVQRHSCGTCSRTFKTKSQLTVHTKSKHTKIRDHACDVCSYTCVNKSLLDYHKKRHVKDYAAFCQVCGKGFYRPGDLNGHMFKHRSDKPKCEFCGKTYSSEPDLKRHIRTHNPNYKEVKFPCGSCSKSFSCARNLKNHTRVAHLNQSLFVCDTCGRGFNSDTGFDLHKKIHTGVKPFACKLCDKMFAQRKMLQVHERVHTGEKPYQCKECDKQFTQRSSLVVHTRIHTNERPFVCDVCNKSFRSNGMLSSHVSTVHSNEYPFSCTTCKRNFKAKHNYLSHLELHSVEKKHVCDICGFSCFQKKALSKHSKVHNKDSLLFCEICGKSFYYKSDLISHKFKHREDKPKCEFCGKTYSYEGDLKRHVRSHDPNYKHNKCESCDKSFSTARNLKNHVLVTHLDKKLFICDTCGRGFKSDTGFDLHKKIHSGEKPFSCQHCDKSFPQKKMLQVHERTHTGERPYECKECGKRFTQRSSLAVHIRYHTGERPYPCHLCTKAFVTRTLLNTHLKVHGLALSNPNTLQSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -