Vnig015285.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- ZNF236
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000051.1:1582247-1601303[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0042 0.12 13.5 4.2 1 23 67 89 67 89 0.96 2 23 0.027 0.75 10.9 0.6 1 23 95 117 95 117 0.97 3 23 2.4e-07 6.7e-06 26.8 0.1 2 23 123 144 122 144 0.97 4 23 0.39 11 7.3 0.7 3 23 152 173 150 173 0.95 5 23 0.018 0.5 11.5 3.6 2 23 186 207 185 207 0.97 6 23 9.4e-05 0.0026 18.7 3.7 1 23 234 256 234 256 0.98 7 23 5.1e-05 0.0014 19.5 1.6 1 23 262 284 262 284 0.98 8 23 0.00013 0.0036 18.2 1.0 1 23 290 313 290 313 0.96 9 23 0.00044 0.012 16.6 2.5 1 23 322 345 322 345 0.98 10 23 8.1e-06 0.00022 22.0 1.1 1 23 433 455 433 455 0.98 11 23 1.3e-05 0.00034 21.4 5.7 1 23 461 483 461 483 0.99 12 23 0.21 5.6 8.2 2.4 1 23 496 519 496 519 0.95 13 23 0.00028 0.0076 17.2 0.3 3 23 523 543 521 543 0.96 14 23 7.1e-05 0.002 19.1 0.3 2 23 550 571 549 571 0.97 15 23 6.5e-05 0.0018 19.2 3.2 1 23 620 642 620 642 0.97 16 23 0.00039 0.011 16.7 2.0 1 23 648 670 648 670 0.98 17 23 0.0023 0.063 14.3 3.6 1 23 677 700 677 700 0.93 18 23 0.0058 0.16 13.1 4.7 1 23 706 728 706 728 0.98 19 23 0.0013 0.036 15.1 0.6 1 23 936 958 936 958 0.95 20 23 0.069 1.9 9.7 9.2 1 23 964 986 964 986 0.98 21 23 2.2e-05 0.00061 20.7 1.3 1 23 1183 1205 1183 1205 0.97 22 23 7.7e-06 0.00021 22.1 2.1 1 23 1211 1233 1211 1233 0.99 23 23 0.0062 0.17 13.0 3.9 1 23 1239 1262 1239 1262 0.97
Sequence Information
- Coding Sequence
- ATGTcgataacaaatttaaaagagGTAGAACTTCACGAAGATAATTCAACTGAGAATAATTCTGAGTTTGTTACTTATCAATATATATTGCCCATACAAGTACTGAATGATAACAGTTTGAACCAGTTTATGCCCAGTGGCTACATATTGAAAACCCTCGAAAATGGAGCTCTTGTTTTGGAGGAAAATTCGaatttgttTACTTGTGAATTATGTAAtgaaagttttgagaaaaaaattcaccttaaaaaacacaaaacacaGCATTTGAATGATAAACCTCACAAATGTACGGAATGTGCAGCATCCTTCAATATTTTGtcaaatttaaatttacataagATTATACATCagaaaaatgtactaaaatgtCCAGAATGCGGAAAAACATTCACTCGCAGCGCCAGTTTAAAAGCACATTTGATTGTTCatgaaaaagaagaaataattaattgtccTTCGTGCGAGGACTCTTTTGATACGCAATTATTATTGAAGGAGCATATCAATTCTTGCCACAAAATAAAACTGGAAACCGAAGTACAAACGCCACAAAAGTGTAAAATTTGTTACAAAAGTTTTGACGATCATTTATCGTATAAATCTCATTTGCGGGACCATAATAAGGTACGACGTATTCTCACAAAATTCAAATATCCATTTCGATCGTCAGGTCGTAAAACGAACGTGAAATTAAAACATGAGTGTTCCGTTTGTAAGAAAGCTTTTCAAAAACACAGTCAGCTAATACGTCATATAAGAATTCATACTGGAGAACGGCCTTTTAAATGCAACTTATGTAACCTAGCTTTTAGTCAgaataatactttaaaaatccATATGACTAAACATACCGGAATTCGGCCACATTCGTGTTCACTATGTCCTGCCAAATTCAGTCAGAGAGGCAATTTACGCAACCATATTTTAAGAGTACATTCGATAGAAAATAGCGAAAATGTCTACGAGTGTAACGAATGTTCCTGTAAGTTTCGAAAGCTAGGGACTTTAAATGCCCACATGAACAGAATGCATTGCAATAAGGAAGATACGAATAATACGACTGAATCAGACGTTCAAGTTTTATGTAAAGAACTGAAcagtttaaatgaaaattgtgATCCAGCGAGCGAGAGTTCGACAAAGAAAAATGCTAAAAGTGAATTGAATTATTGGGCAATCAGAAATGAGAAGTCGTACGCCAGTTATAGAATTACCGTACTGGCCGATAAAAGTGTCGATGGAACAGTTCGACGTCACATGATTCGACAGAGAAAGGTGGGAAATGTTCGTTGGCATCAGTGTTCGTATTGTCCAAAAGAATTCAAGAAGCCATCGGATGTTGTTAGACATATTCGAATTCACACTAGAGAAAAACCGTTCAAGtgcaATTATTGTAGTCGGTGTTTTACGGTACAGTCCACCTTAACTTCGCATTTACGAACACACCAAAGTTCAAATAATGGTACAGAAAATGGTGCTTCGTTTAAATGTGATATCTGTGATAAACTTTTTCCTAATCTTCTGTGTTGGAATAATCATAATAAaaaaaatcaTCAGGTCATATGTCAAATTTGTAACAAATCGTACCGAACTCAGGAACAGCTGGCAATACACTCACAGTCACACTCTTTGTCTGAAGAATCTAAGTGTACAGTCTGTGATAAAATTTTTCCGACTCCTGAACAACTGAATCTTCATTCACGGTCtcataaaaagaaaaagaaagatGATGAAACTTTATACAAATCGGTTTCATTACAGGAACCTATAGTAATCATTCAAGATGGATATATTCAGGCGCCTGTGTCATCGAAGAATCGTCCAATAGTTGAGGCAAACAGCCATTTTCGTCCACACAAATGTACAAACTGCGGGGCAGCTTTTAGAAAATCGAGTCATCTTAAACAACATCTTATTATTCATTCAACAGAAAAACCATTTGCCTGTACGAAATgtgatagTGTATTTCGATATGCACATGCGGTCAAAAATCATATGCGAACACATGACAATTCCAGTAAATCGTTTGTTTGCGAACAGTGCAACAGCTGCTTCACGACGTCGGGCAGTTTACGAAGACATCACATTGCACAGCACAGTACTGTAAGGCCGTATATGTGTCCGTACTGTCAAAAGACTTTTAAATTATCAACAAGTTGTcgaaaacatataaaaatacatagaaGTGAAATTTACAGAAAGcaACAGGACAGTATGGCTGAAAGTAACGTTCTTGACATAACAGTCACGGCTGAACCAACAGCTGAAAACATTACTGAAATAGaagctgataaaaatatgaatttagtAGAAGAAAATACCGATTGTAATAATCCGATTGTAAATATGCCGTTTGAGTCAACAGAAGAAGTAACAATTTCAAGAGttcccGAACCTGTTTCTTCAGCGACTATAGTATCTGACCAGttaatacaaacattatttacaaataaaaatgtcttaACTGATATGAATACAAATGCTCGACAGGATGACATTACAATAGAGGATTCTTTGAATCAACAATTGTATAATATTGTTGGGTCTGATGGTGTAGTTGACGCCACAATGAATGAAAAAGAACGACCAGTGGGCGAGGAGATAACGTTAAATACTCtccaaaatgataataatttgcCGACAGAAAATGAAACATATTTACCGATTTTGGAGTCGGAAAATCCACCATATACTGTTATTTTTGACCTGAATAATCCAATTGTTATAAATGTCACAGATGTACTGGATCAGTTCAAAACTAAAACACCAGATGGAATTCAGGTGCATTTAGGGGAAAAGAATTTCTTGTGTCAAGTTTGTAACTCCTTGTTTAGTACTAAAGGTAGCCTGAACGTTCATATGAGATTGCATACTGGTGTGAAGCCATTTAAGTGTCAGTTTTGCGATCGACACTTCCGAACGTCCGGACATCGGCAGGCTCACCACCAGTCGCATTTAAAACAAGCGAAACGCACAAATTCAAAACCGAACAGTGAAATCAGTCGAGGGATCAAACTACGAACTTTATTTTCTGAATCTGTTGCTTCTATTTCTGATTCCGCGAAATCAGAAAATGTTAATGAAACTGTgatagacaaaaatataaaaaaagaaaacatagtAAAAGATtcgaatttatcaaaaattagaAAGATGGATAATAGCGGGAACATTTCAAACGTTTGTTATATGATTAACGATAAAGTATCCAGTATTGTTGATTCTAATCAACATACCGAAATCAGTTCAGAAATTCTGGAACATTTACAAACCACCGATAATCAGACACTCATTGAAGACAATGCTTTAACGTTAAACAATCAAGAATGGTATGATATACAGACAGACGAAAATGGACAAATCGTTAATATTCAACCTTCAATAAATCCAAGTTTATTTACCGATCCATTGGATTTACAAATACCATCTCAAACATTGTTGACAACGAGTGCAGAAGATTCGGATATGAATCCGTCATGCACCGCCATTGTGGATGCAGAATTTATTGAAGCCAGCGATTATCAAGCGGTTCCTTTAAAAACATATGACTGTCTCGAATGCAACAAATCGTTCAATAAGCCTAGTAAATTGGAACGCCATTTTAGAATTCATACTGGAGAACGGCCATTTACGTGTGAATATTGTAACAAGACGTTCAATCAGACAAACGCTCTGAATATGCATCTGAGAACACATTCAGGAACTAAGCCACACCAATGTCCGTATTGTTCACACACGTCTACACAGAAAGGAAACATGAAAACGCATTTGCTGAGagcACATGATGTGACAACTTTACCCAAGCAATTAGTAAATCCattaaatacaagtattgttATTCAGTCAAATGACGGTTCAGAAGCCATTTTGAAATTAGAGGGTGATTGGAATGCTTCATAA
- Protein Sequence
- MSITNLKEVELHEDNSTENNSEFVTYQYILPIQVLNDNSLNQFMPSGYILKTLENGALVLEENSNLFTCELCNESFEKKIHLKKHKTQHLNDKPHKCTECAASFNILSNLNLHKIIHQKNVLKCPECGKTFTRSASLKAHLIVHEKEEIINCPSCEDSFDTQLLLKEHINSCHKIKLETEVQTPQKCKICYKSFDDHLSYKSHLRDHNKVRRILTKFKYPFRSSGRKTNVKLKHECSVCKKAFQKHSQLIRHIRIHTGERPFKCNLCNLAFSQNNTLKIHMTKHTGIRPHSCSLCPAKFSQRGNLRNHILRVHSIENSENVYECNECSCKFRKLGTLNAHMNRMHCNKEDTNNTTESDVQVLCKELNSLNENCDPASESSTKKNAKSELNYWAIRNEKSYASYRITVLADKSVDGTVRRHMIRQRKVGNVRWHQCSYCPKEFKKPSDVVRHIRIHTREKPFKCNYCSRCFTVQSTLTSHLRTHQSSNNGTENGASFKCDICDKLFPNLLCWNNHNKKNHQVICQICNKSYRTQEQLAIHSQSHSLSEESKCTVCDKIFPTPEQLNLHSRSHKKKKKDDETLYKSVSLQEPIVIIQDGYIQAPVSSKNRPIVEANSHFRPHKCTNCGAAFRKSSHLKQHLIIHSTEKPFACTKCDSVFRYAHAVKNHMRTHDNSSKSFVCEQCNSCFTTSGSLRRHHIAQHSTVRPYMCPYCQKTFKLSTSCRKHIKIHRSEIYRKQQDSMAESNVLDITVTAEPTAENITEIEADKNMNLVEENTDCNNPIVNMPFESTEEVTISRVPEPVSSATIVSDQLIQTLFTNKNVLTDMNTNARQDDITIEDSLNQQLYNIVGSDGVVDATMNEKERPVGEEITLNTLQNDNNLPTENETYLPILESENPPYTVIFDLNNPIVINVTDVLDQFKTKTPDGIQVHLGEKNFLCQVCNSLFSTKGSLNVHMRLHTGVKPFKCQFCDRHFRTSGHRQAHHQSHLKQAKRTNSKPNSEISRGIKLRTLFSESVASISDSAKSENVNETVIDKNIKKENIVKDSNLSKIRKMDNSGNISNVCYMINDKVSSIVDSNQHTEISSEILEHLQTTDNQTLIEDNALTLNNQEWYDIQTDENGQIVNIQPSINPSLFTDPLDLQIPSQTLLTTSAEDSDMNPSCTAIVDAEFIEASDYQAVPLKTYDCLECNKSFNKPSKLERHFRIHTGERPFTCEYCNKTFNQTNALNMHLRTHSGTKPHQCPYCSHTSTQKGNMKTHLLRAHDVTTLPKQLVNPLNTSIVIQSNDGSEAILKLEGDWNAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -