Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: PRDM15
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:4695148-4700590[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 4.7 1.3e+02 3.9 2.5 2 23 91 111 90 111 0.94

2 20 0.00023 0.0062 17.5 4.5 1 23 117 139 117 139 0.97

3 20 0.0038 0.11 13.6 3.7 1 23 145 167 145 167 0.97

4 20 1.4e-05 0.00039 21.2 1.7 1 23 173 195 173 195 0.97

5 20 0.0072 0.2 12.7 1.3 3 23 203 223 201 223 0.96

6 20 1.7e-05 0.00047 21.0 1.2 2 23 228 249 228 249 0.98

7 20 0.00012 0.0034 18.3 2.8 2 23 261 283 260 283 0.95

8 20 3.4e-06 9.5e-05 23.2 0.1 1 23 289 311 289 311 0.98

9 20 1.1e-05 0.00029 21.7 1.0 2 23 318 339 317 339 0.97

10 20 2.7e-06 7.3e-05 23.6 0.4 1 22 345 366 345 366 0.96

11 20 0.079 2.2 9.5 0.8 1 20 472 491 472 494 0.93

12 20 6.1e-06 0.00017 22.4 2.7 1 23 500 522 500 522 0.98

13 20 0.0014 0.038 15.0 0.4 3 23 529 550 527 550 0.97

14 20 0.00079 0.022 15.8 4.6 1 23 556 578 556 578 0.98

15 20 9.2e-06 0.00025 21.9 1.2 2 23 582 603 581 603 0.97

16 20 0.00046 0.013 16.5 1.4 2 23 613 635 612 635 0.97

17 20 2.6e-05 0.00071 20.4 0.1 1 23 641 663 641 663 0.98

18 20 0.00018 0.0049 17.8 2.7 1 23 669 691 669 691 0.99

19 20 3.6e-07 1e-05 26.3 0.9 1 23 697 719 697 719 0.99

20 20 5e-05 0.0014 19.6 1.4 1 23 725 747 725 747 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	4.7	1.3e+02	3.9	2.5	2	23	91	111	90	111	0.94
2	20	0.00023	0.0062	17.5	4.5	1	23	117	139	117	139	0.97
3	20	0.0038	0.11	13.6	3.7	1	23	145	167	145	167	0.97
4	20	1.4e-05	0.00039	21.2	1.7	1	23	173	195	173	195	0.97
5	20	0.0072	0.2	12.7	1.3	3	23	203	223	201	223	0.96
6	20	1.7e-05	0.00047	21.0	1.2	2	23	228	249	228	249	0.98
7	20	0.00012	0.0034	18.3	2.8	2	23	261	283	260	283	0.95
8	20	3.4e-06	9.5e-05	23.2	0.1	1	23	289	311	289	311	0.98
9	20	1.1e-05	0.00029	21.7	1.0	2	23	318	339	317	339	0.97
10	20	2.7e-06	7.3e-05	23.6	0.4	1	22	345	366	345	366	0.96
11	20	0.079	2.2	9.5	0.8	1	20	472	491	472	494	0.93
12	20	6.1e-06	0.00017	22.4	2.7	1	23	500	522	500	522	0.98
13	20	0.0014	0.038	15.0	0.4	3	23	529	550	527	550	0.97
14	20	0.00079	0.022	15.8	4.6	1	23	556	578	556	578	0.98
15	20	9.2e-06	0.00025	21.9	1.2	2	23	582	603	581	603	0.97
16	20	0.00046	0.013	16.5	1.4	2	23	613	635	612	635	0.97
17	20	2.6e-05	0.00071	20.4	0.1	1	23	641	663	641	663	0.98
18	20	0.00018	0.0049	17.8	2.7	1	23	669	691	669	691	0.99
19	20	3.6e-07	1e-05	26.3	0.9	1	23	697	719	697	719	0.99
20	20	5e-05	0.0014	19.6	1.4	1	23	725	747	725	747	0.98

Sequence Information

Coding Sequence: ATGAGTCGAACAAACCCATTGGAGTTGAAGCCCTTCATCGGCACGTTCCCACCGACAGAACCGCAAGTGATTCTAAATTATGATAACTTAGTTGTTAGTTTGGTACCACCAGAGCAatataatgataaaaattttagtaGAGACGGTAGTTTGAAGCGTGAATGTAACGCCGCGATTAAACCCGATAAACCCGCGCGCTCCAAAACGACTAAATCCGTTAAAAGGGAGGTCGATAGTGATGAACTCGTTTACAAACTGAACAATACGAAAAAGTGTTATATTTGTCACAGATATACCGATAATGTCGATTACGAGgaacatttaaaaaagcacAGCATAGAAAAACCCCATTCTTGTTCCGTTTGCAATAAGTCTTTCCGTTACAATTGCGAATTGAAAGTCCACGCGCGTGTTCATACGGGCGAACGTCCGTTTAAATGCGATCTGTGCAGTCACACTTTTAAAAGTAACGGTCAAATGCGCAGTCATCGCTTACTGCACACGGCCGAGAAATGCCACGTTTGCGAAGTGTGCAACAAAGCTTTTAAACTCAAACAGAACTTGAAAATACACATGCTTCGTCACAATCAAACACATTCGATTTTCTGTGACAAGTGCGGTAAAGGTTTTCATATTATGAGCGAATTGAATGAACATATGTTTAAACATATGCCCGAGGCAAAGTGTGACGTTTGCGGAAAGTCGTATAGCGGTCGACTCGATTTGAAGCGTCACAGACGCACCCACGATCCCGGCTATATTAATACCACAATCAGACAGCAGTGTCATTTGTGCGAGAAATCGTTCGTTACGAAAAGTCGTCTGAAAGTTCACATACAATTGAAACACGAAAACAAGAAACTGTATGTTTGCGACATCTGCGGTAAAAGCTTTAACAGCAAGGAGGGTTTCGAAATCCACGCTAGAATACATTCGGGCTCGAAACCTTTGCAGTGTACCCAGTGCGATAAACGGTTCAATTCTAGAAATACGCTCGAAGTTCATTTGAGAGTGCATACGGGGGCGAAGCCCTACGAATGCAAGGAGTGCAATAAACGGTTTACACAGCGTGCTAGTTTAGTAGTGCATATGAGGTCAGTGGATGAAAAATTAGTTTCCAAAAAACCACGACCCACCATTTTTGTAAATAGCTCGTTGCAATCGCGTTTTTCTTCTGAAGTATGTCAGTACCCCGTTTTTTACAAAGATCTATATTTATGTCCGATTCAAGGCTATTTTAAACAAGAAATGCCCGAAGAAGATCcgttaataaaaaaagagataCAGACCGTTAAACAAGAATTTATAGAAGAAACTCCATTGATAAAAAATGATCCGACTGTAAATTCTAACGTTGAAAGTTTAGATAATTTTGCCGGTCAGTTAGGTGTCCGTGAACCAAAaccgaaaaaatataaatgtccaGTTTGCAGTGCGGCGTTTACTAAAAGCGATATACTGCGCTCCCATTTAGCTTGTCATTCCGAAGAGAGACCCTATCCGTGCGAGATTTGCGAGAAGACATTCAAAAGAACTTCAAATTTATGCGtgcacaaaaaaatacatttcgagAAGAAATTCGGCTGCGATATATGCGGCCGTAAGTTTTTTTGGAAGTCGTATCTCAACGCTCACCTAAAAACTGTCCACCGCGAAGACTTCCCGTTCGTATGCGAAACGTGCGGAAAGCGCTACAAACAAGTCTGTCACTTAAACTATCACATGTCGGTGCACATGGCGCTAAAGTGCGAAATTTGCGAAAAGCCGTTCTCGtacaaatataaattgaaaaagcaCGTGCTGACACACGATCCGAATTACGATTTTTCGCAGACTAAGTGCCGGTTCTGCGATAAAATTCTAGTCAATAAAAGTAGTTTGACGACGCACTTGAAAACGGTACATGGTAACAGACAGTTGTATGTTTGCGATGTGTGCGGTAAAAAATTGGCTACCAAAAGTGGTTTGAAACTACACTTGAACGTCCATTCCGGCATTAAACCTTATAAATGTACGCGGTGCGATAAATGTTTCAGAGCCGAAAATACTTTGGCTGTCCATTTGCGATCGCATACTGGCGCCAAGCCCTACGAGTGTCCCGAATGTAAGAAGCGGTTCACGCAACGCAGCACTTTGGTGATTCATTTGAGATCGCATAGCGGCGAAAAACCGTATAGGTGCCAGTTGTGCGAGAAAGCCTTCGTCACTAAAACGCTTTTGAAAATGCATTTGAAGAatcatttgtaa
Protein Sequence: MSRTNPLELKPFIGTFPPTEPQVILNYDNLVVSLVPPEQYNDKNFSRDGSLKRECNAAIKPDKPARSKTTKSVKREVDSDELVYKLNNTKKCYICHRYTDNVDYEEHLKKHSIEKPHSCSVCNKSFRYNCELKVHARVHTGERPFKCDLCSHTFKSNGQMRSHRLLHTAEKCHVCEVCNKAFKLKQNLKIHMLRHNQTHSIFCDKCGKGFHIMSELNEHMFKHMPEAKCDVCGKSYSGRLDLKRHRRTHDPGYINTTIRQQCHLCEKSFVTKSRLKVHIQLKHENKKLYVCDICGKSFNSKEGFEIHARIHSGSKPLQCTQCDKRFNSRNTLEVHLRVHTGAKPYECKECNKRFTQRASLVVHMRSVDEKLVSKKPRPTIFVNSSLQSRFSSEVCQYPVFYKDLYLCPIQGYFKQEMPEEDPLIKKEIQTVKQEFIEETPLIKNDPTVNSNVESLDNFAGQLGVREPKPKKYKCPVCSAAFTKSDILRSHLACHSEERPYPCEICEKTFKRTSNLCVHKKIHFEKKFGCDICGRKFFWKSYLNAHLKTVHREDFPFVCETCGKRYKQVCHLNYHMSVHMALKCEICEKPFSYKYKLKKHVLTHDPNYDFSQTKCRFCDKILVNKSSLTTHLKTVHGNRQLYVCDVCGKKLATKSGLKLHLNVHSGIKPYKCTRCDKCFRAENTLAVHLRSHTGAKPYECPECKKRFTQRSTLVIHLRSHSGEKPYRCQLCEKAFVTKTLLKMHLKNHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -