Vnig020797.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- ZNF131
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000100.1:224261-230823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0055 0.15 13.1 0.1 2 23 223 244 222 244 0.96 2 20 0.0077 0.21 12.7 1.5 2 23 251 272 251 272 0.97 3 20 7.2e-05 0.002 19.0 0.4 3 23 286 306 284 306 0.95 4 20 9.2e-05 0.0025 18.7 3.7 1 23 312 335 312 335 0.96 5 20 0.00039 0.011 16.7 1.6 1 23 343 365 343 365 0.95 6 20 5e-05 0.0014 19.5 1.4 1 23 371 393 371 393 0.98 7 20 6e-07 1.6e-05 25.6 0.4 2 23 400 421 399 421 0.97 8 20 1.1e-05 0.0003 21.6 0.9 1 23 427 449 427 449 0.97 9 20 6.4e-05 0.0017 19.2 1.1 1 23 455 477 455 477 0.98 10 20 0.38 10 7.3 0.0 5 23 485 503 482 503 0.94 11 20 0.015 0.41 11.8 1.0 3 23 511 531 510 531 0.97 12 20 0.00015 0.0042 18.0 0.6 3 23 545 565 543 565 0.95 13 20 0.00011 0.0031 18.4 5.0 1 23 571 594 571 594 0.96 14 20 5.1e-05 0.0014 19.5 1.3 1 23 602 624 602 624 0.96 15 20 0.018 0.5 11.5 0.6 1 23 630 652 630 652 0.96 16 20 4.7e-06 0.00013 22.8 0.3 2 23 659 680 658 680 0.97 17 20 1e-05 0.00028 21.7 0.5 1 23 686 708 686 708 0.97 18 20 6.1e-05 0.0017 19.3 1.0 1 23 714 736 714 736 0.98 19 20 6.3e-05 0.0017 19.2 0.2 1 23 742 764 742 764 0.96 20 20 4.3e-05 0.0012 19.8 2.3 1 23 770 792 770 792 0.99
Sequence Information
- Coding Sequence
- ATGAATACGTCTCAAACAGTACAGTTTAATACAATTTGTAGAGTATGcttattgcaaaaaaatgatATGCAAGCATTATTCGAATACGAAATTGTAAATATGATTGTGGCGTGCGCTACCGTACAGATCGAAAAAGGAGATGGTCTTCCAGAACGAATATGTGAACAATGTATGAACTTGCTTAACTGGTCctacttttttaaaacacaatgtGAGAAAGCTGATCAAATTTTGCGACtgcatttaaaacaaaacggCGATCGTATAGAAAATcacgatataaaaaatatcagtcttcaaattttacattttccaCATTTAGATATCTGTAAATTACCCGATTTCAATATCGCGAATAATATCGTAACGGATATTGTCAAGGATGATTCCGATGATATAGCACACGATGTTGATATTGAATATgataaagatattaaattagAATGCGATCCGGATGAAATAAGTAACTCAGAAAATTACTATTCTATAAAAACAGAAAGTAACGATAAAACAGAAAATAGTCCAATTAACAGCAGCAAACGTTTGAttgcaaacaaaaatgaaacgaaaaagaaaacaaataaaaaacaaaggaAGACATTaaagagtaaaataaaaaagattaataaagCAAAAGAACTATCCAAAGCAATGAAGGATTATATTAGATGCAAAGAATGTCGAATGAGATTTATTTTAGAATCGGATTTAGAAATTCATATGATAGCCCATTCAGAAAACCACAATAATACCTGTTCAATTTGTAGCGAAACTTGCACAGATATAAGGTCCTTGCGGAAACATCTTGCTGTTCACATGCAAAATAAACCTTTCTTTTACGATAAAGTtcatttatgtacgatttgtGGGAAAGGATTTGGTTATCCAAAATTATTAGCTGTTCATATGAGACAACATTCAGGTgaaaaaccgtatcagtgtacaGAATGTGGTAAACATTTTGTAGATACGAATAACTTACAGATGCATAAACGGTTTAAGCATAAAGGAGATTCTGAACGGAAACATATCTGCGAGACATGCAACAAGgcgttttatacaaaaaaattgttgaaagacCATCTTGTAGTTCATACAAAAGAGAAGCCATATTCGTGTATGGTTTGTAGTAAAAGTTTCACGCAAGCGCAATATGTAAAAATTCATATGCGGAAACATACAGGAGACTGGCCTCTGTCGTGCACGGAGTGCGGAATGGGTTTCACGCAACAAAGCAAACTGGAGGTTCATATGAGGACGCACAcagGTTCAAAACCACACATGTGTGACGTATGTGGCCGAGGTTTTGCAcagagttttagtttgaaagtTCATATGAGCACCCATACTGGAAACAAACCTTACGCTTGTCCCGAGTGCCCGCTAAGATGCGCAACGAAAACAAAACTCGAATCGCATATGAGAAAACACACCGGAATACATCCGTATTTGGACTGTCGCATGAGATTTACGTTGCAATCGGATTTAGATATTCACATGATAGCGCATTCAGAAAACCACAACAACATTTGCTCAATATGCGAGGAAGACTGCAAAGACATTAGAAATCTGAGAAAGCATCTTTCGGTTCACATGAAGCACAAACCATTCTTCTTCAATAAAGCTCATCTATGCAATGTATGCGGCAAGGGATTTGGTTATCCGAAGCTTTTGTCAATTCATATGAGGCAACATACCGGTGAAAAACCGTTTGAATGCCCGGAAtgcaataaacattttattggAAAACATCATTTACAAGTTCACATTCGGTTTACTCATAAGGGTGCTTTGGAACGAAAACATGTTTGTGATATTTGTAAGAAAGCATTCATTCAAAAGAAAACGCTAAAAAATCATCTGGTAGTTCATACGAAGGAAAAACCATTTTCATGTATGGTTTGTAATAAACGGTTCACGCAAGCGCAATACGTTCCAATTCATATGCTCAAACATACAGGGAATTGGCCATTGTCCTGTAAAGAATGCGGAATGGGGTTCAGTAGACAGAGTAAACTTGATATTCATATGAGAGTACACACCGGTTTGAAACCTCACATGTGTGATGTTTGTGGCCGTGGTTTTGCGCAAAGTAACGGTTTAAAACTTCACATCCGCACGCACACTGGTGAAAAACCGTTTCCCTGCTCAGAATGTCCACTGCGCTTTGTAGCCAAACACCAATTGGAATCTCATATGCGAAAACACACAGGAGTGCATCCTTATTTGTGTCCAACTTGTGGCAAAAGTTTTGCTTGGAgacaaaatttaagaaaacatattttagtgCATACCGGGGAAAGACCTTACAAATGTGTGATTTGCGAACACAAGTTTACTGATCCCAGTGCTTTatcgaaacataaaaaaacgcaTGGCGAAACTGTACATTCAAAGTCTAATGTAAGTTGA
- Protein Sequence
- MNTSQTVQFNTICRVCLLQKNDMQALFEYEIVNMIVACATVQIEKGDGLPERICEQCMNLLNWSYFFKTQCEKADQILRLHLKQNGDRIENHDIKNISLQILHFPHLDICKLPDFNIANNIVTDIVKDDSDDIAHDVDIEYDKDIKLECDPDEISNSENYYSIKTESNDKTENSPINSSKRLIANKNETKKKTNKKQRKTLKSKIKKINKAKELSKAMKDYIRCKECRMRFILESDLEIHMIAHSENHNNTCSICSETCTDIRSLRKHLAVHMQNKPFFYDKVHLCTICGKGFGYPKLLAVHMRQHSGEKPYQCTECGKHFVDTNNLQMHKRFKHKGDSERKHICETCNKAFYTKKLLKDHLVVHTKEKPYSCMVCSKSFTQAQYVKIHMRKHTGDWPLSCTECGMGFTQQSKLEVHMRTHTGSKPHMCDVCGRGFAQSFSLKVHMSTHTGNKPYACPECPLRCATKTKLESHMRKHTGIHPYLDCRMRFTLQSDLDIHMIAHSENHNNICSICEEDCKDIRNLRKHLSVHMKHKPFFFNKAHLCNVCGKGFGYPKLLSIHMRQHTGEKPFECPECNKHFIGKHHLQVHIRFTHKGALERKHVCDICKKAFIQKKTLKNHLVVHTKEKPFSCMVCNKRFTQAQYVPIHMLKHTGNWPLSCKECGMGFSRQSKLDIHMRVHTGLKPHMCDVCGRGFAQSNGLKLHIRTHTGEKPFPCSECPLRFVAKHQLESHMRKHTGVHPYLCPTCGKSFAWRQNLRKHILVHTGERPYKCVICEHKFTDPSALSKHKKTHGETVHSKSNVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -