Vnig006821.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000014.1:4214816-4216828[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 6.1e-05 0.0017 19.3 3.4 1 23 18 40 18 40 0.98
2 22 5.1e-06 0.00014 22.7 5.0 1 23 46 68 46 68 0.98
3 22 0.00021 0.0057 17.6 0.4 1 23 74 96 74 96 0.98
4 22 0.0024 0.066 14.2 0.9 1 23 102 124 102 124 0.92
5 22 0.00017 0.0047 17.9 5.9 1 23 128 150 128 150 0.98
6 22 0.00012 0.0033 18.4 1.4 1 23 192 214 192 214 0.98
7 22 8.4e-06 0.00023 22.0 1.1 1 23 220 242 220 242 0.98
8 22 0.00085 0.023 15.7 0.9 1 23 248 270 248 270 0.98
9 22 9.4e-05 0.0026 18.7 2.0 1 23 276 298 276 298 0.99
10 22 0.00093 0.025 15.6 3.5 1 23 304 326 304 326 0.95
11 22 0.00082 0.023 15.7 3.4 1 22 335 356 335 356 0.95
12 22 0.0044 0.12 13.4 2.9 1 23 360 382 360 382 0.97
13 22 4.8e-05 0.0013 19.6 1.6 1 23 388 410 388 410 0.96
14 22 8.5e-05 0.0023 18.8 0.7 1 23 416 438 416 438 0.98
15 22 0.0067 0.18 12.9 3.7 1 23 444 466 444 466 0.96
16 22 0.0023 0.063 14.3 3.4 1 23 472 494 472 494 0.99
17 22 4.7e-05 0.0013 19.6 3.5 1 23 499 521 499 521 0.98
18 22 1.2e-06 3.3e-05 24.6 0.5 1 23 527 549 527 549 0.99
19 22 5.1e-07 1.4e-05 25.8 2.4 1 23 555 577 555 577 0.98
20 22 0.00046 0.013 16.5 4.7 1 23 583 605 583 605 0.98
21 22 0.0011 0.03 15.3 3.4 1 23 611 633 611 633 0.98
22 22 0.0026 0.07 14.2 0.6 1 23 639 662 639 662 0.94

Sequence Information

Coding Sequence
ATGTTATTAAAATCAGAAGATTTAAAAATAGACAATACTACAACTAAACATTACCAATGTAAAATTTGTTTCAAACGACTGTCTTCGAAAAGTAATTTAATAATCCATCATCGACTGCATACTGGTGAGCAACTACACCGATGCGATGTTTGCCAAAAGTGTTTCATTACAAGTTCAACTTTGAAATTACACATGCGTGTTCATTCAGGTGAAAAACCTTACCACTGTGAAATTTGCGACAAGTTATTTGCTTACAAAGGTGCTTTGGTTGTTCATAAACGTGTTCATACCGGAGATAAACCGTATAAATGTATTGCTTGTGACAGCAGATTTTCCCAAAAAACCGGGTTAACAAGGCATATGGAGACGCACGTCAATTCTCATCAATGTTGTTATTGTGACAAGAGTTTTGCCGACGAAAAGCATTTGATTATCCATAAACGTGTACATTCTAATGAAAACCCGGACTCTTCTTTTGATATAGACGTAACAGATGACAGTCTAATAACATCGGAACTTtcacaaaatgaaataaaaaatgaactagAATTTACAGGCGACAGAATAAAGTTGTATCAgtgtaaaatttgttataagCGGTTATCTTCAAAAAGTAATTTAGTAATCCATAATCGTTTGCATACAGGCGATCAACTCTACAAATGCGACATTTGTAAAAAAGGATTCATTACCAATTCAACCTTGAAATTGCATAATCGTATTCATACCGGCGAGAAACCGTTTCAGTGTGATATTTGTGCCCAACAATTCACATACAAAACGTCCCTAATTGTTCATAAACAATCGCACATTGGGGACAAACCATATAAATGCAATACTTGTGAAAgtcgattttctcaaaaaacagCTCTAACTAAACACGAGCGCATTCACATTAAAATAACCCCGTATCTTTGTCATGAATGCAACAAATCATTCGTCAACGAGCATCTCTTGTATGCTCATAAACAGCTACATACAAGTGATAAGAAAATAATGACATACAAATGTAAAGAGTGCTACAAACGATTTAGAATCGAAGATAATCTTAAAAAGCACGTCTGTACGCGTGGAAATTACCGATGTGAAATATGCAACAAATGTTTTGGTTTTAAAAACAGACTTGCCATCCATAATCGGCTTCATACAGGCGACAAACCATATTTATGTGAACTGTGCAGTAAACGATTCATTTCGAAAGCGCAACTAACTTCACACAAAAGAACACATAGCGGAATAAAACCGTTTGTTTGTTCTCTCTGCGACATGCGATTTTATACCAAGGCCGAATTGATTAGCCATAATCGTACACATTCTGGTGAACGACCGTTTAAGTGTGAATTGTGTGACAAACGTTTCAAGTTTAGAAACACATACAACTTACATAAAATTCAACACACTGGAGAATATCCGTTTAAGTGTAATTTATGCACCCAATCGTTCAATCAAATTTGGAAACTGGCTCACCATAAACGTATGCACACAGGCGAGAAGTTTAAGTGTGAAGTTTGCAGCaaatgctttaaaaataaaacaagccTTGTCATTCATTCTAGaatacatactggcgagaaaccgtatcagtgtgaagTGTGCAGCGTTAGATTCAGTCAGAGAAGCGGTTTAACCAATCATATGCGCGTACATTCGGGTGAAAAACcacatcagtgtgacatttgcaaCAAGAGCTTTTCGCAGTTGTATAACCTGACGGCGCATAAACGTATTCATACTGGTGAAAAGATATTTCAGTGTGATCTGTGCCCGGCAAGTTTTACGCATAGGCATAGTTTAAAGATTCATAAACAGAGACATACGGGGGATAAACCACATAAATGCAACGTTTGTGAGAAGAGGTTTTATCAAAAAGGACGACTGGTCGAACATAGTCGAACGCATACAGGCGAAAAGGCTTATCAATGCCAGATTTGCTCGAATCGGTACGCTGATAAACGAGGTTTAAAAAGACACACTATACAAATACATTCTAAGGACTCAGTGATTATTCAataa
Protein Sequence
MLLKSEDLKIDNTTTKHYQCKICFKRLSSKSNLIIHHRLHTGEQLHRCDVCQKCFITSSTLKLHMRVHSGEKPYHCEICDKLFAYKGALVVHKRVHTGDKPYKCIACDSRFSQKTGLTRHMETHVNSHQCCYCDKSFADEKHLIIHKRVHSNENPDSSFDIDVTDDSLITSELSQNEIKNELEFTGDRIKLYQCKICYKRLSSKSNLVIHNRLHTGDQLYKCDICKKGFITNSTLKLHNRIHTGEKPFQCDICAQQFTYKTSLIVHKQSHIGDKPYKCNTCESRFSQKTALTKHERIHIKITPYLCHECNKSFVNEHLLYAHKQLHTSDKKIMTYKCKECYKRFRIEDNLKKHVCTRGNYRCEICNKCFGFKNRLAIHNRLHTGDKPYLCELCSKRFISKAQLTSHKRTHSGIKPFVCSLCDMRFYTKAELISHNRTHSGERPFKCELCDKRFKFRNTYNLHKIQHTGEYPFKCNLCTQSFNQIWKLAHHKRMHTGEKFKCEVCSKCFKNKTSLVIHSRIHTGEKPYQCEVCSVRFSQRSGLTNHMRVHSGEKPHQCDICNKSFSQLYNLTAHKRIHTGEKIFQCDLCPASFTHRHSLKIHKQRHTGDKPHKCNVCEKRFYQKGRLVEHSRTHTGEKAYQCQICSNRYADKRGLKRHTIQIHSKDSVIIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-