Vnig012401.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2367712-2370333[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 9.9e-05 0.0027 18.6 4.1 1 23 215 237 215 237 0.98
2 19 7.4e-05 0.002 19.0 1.6 1 23 243 265 243 265 0.99
3 19 7.1e-05 0.0019 19.1 10.7 1 23 271 293 271 293 0.98
4 19 0.00023 0.0064 17.4 5.3 1 23 299 321 299 321 0.99
5 19 8.4e-06 0.00023 22.0 2.1 1 23 327 349 327 349 0.98
6 19 0.00066 0.018 16.0 2.9 1 23 355 377 355 377 0.98
7 19 2.9e-05 0.00081 20.3 4.0 1 23 383 405 383 405 0.99
8 19 1.3e-06 3.7e-05 24.5 2.4 1 23 411 433 411 433 0.99
9 19 8.7e-06 0.00024 21.9 7.0 1 23 439 461 439 461 0.97
10 19 1e-07 2.9e-06 28.0 2.6 1 23 467 489 467 489 0.99
11 19 2e-05 0.00055 20.8 4.0 1 23 495 517 495 517 0.99
12 19 2.3e-06 6.4e-05 23.7 2.8 1 23 523 545 523 545 0.99
13 19 1.5e-08 4.3e-07 30.6 1.9 1 23 551 573 551 573 0.99
14 19 2.8e-05 0.00076 20.4 6.0 1 23 579 601 579 601 0.99
15 19 0.0002 0.0056 17.6 0.2 1 23 607 629 607 629 0.99
16 19 1.6e-05 0.00044 21.1 3.3 1 23 635 657 635 657 0.98
17 19 8.4e-06 0.00023 22.0 1.7 1 23 663 685 663 685 0.98
18 19 1.1e-05 0.0003 21.6 3.4 3 23 693 713 691 713 0.96
19 19 0.00014 0.0038 18.1 1.2 1 23 719 741 719 741 0.98

Sequence Information

Coding Sequence
ATGGAAAACATATCTTTGTGTAAAAAAAGTATTAGTGGAATGTGTCGTTTGTGTTTATCTAGCGACAGGGCACTGATTGATATGTCCTCGTTTTCATCAGAACTGAAAAGTCTAATAGCACATGCTGTCACAAAATGCACTTCCGTTCATGTAGAAGAATATAGCGAATTGCCTAGAACTATATGCGAGTCTTGTTACATGCAGCAcattaaaattgataatttccAAATGCAGGCCCTAACATCTGATAGAATCCCACAGTTGTATCTACAAAAAATGCAAGAAGACGATAAACAAAACATATGTGGAAGCTCAGTACTACTTCCAGATATTGACGGGGATTCGTCTCTTGTATCCGATGTTGTAAACCAGGCCACGGAAGATAACAGTGAAGGaataaaacatgaaaatgaaaattttgaaagcgACAGTGAGAAACTTgatattgaagaaaataaagtttttgcATTAGATTCAAAACCACATATGGGATGGGATAACGTGATTGTAAAATCTGAACCTAAAATAAATGACAATGATCAATGCGACCATGATACCAAAATATTTACTGATTTCGCAGTACATGAGAAGACTATCAAGTCAGAAAATGAAGTGTTCAATGATGATCAGTGTGAAAAAGTAcataagtgtgacgtttgtaataagtgtttcatgACAAATGGTGATTTGGGAAGACACCAACGTTTACATATTGATGACCAGCAAtatcaatgtgatgtttgtaataagaatCTCAGAAgttcaatttatttgaaaagacACCAGCAATCTCATACTTGTGAGAAAATAcataagtgtgacgtttgtcaTAAGTGTTTCAACCActcaagtaatttaaaaaaacacgaacgcatacatactggtgaaaagccATACCAGTGTaccgtttgtaataagtgtttcaacgATTTTACTACTTTCAGCAGACATCAGAACGTGCATTCTGATGAGAAACGAtatcaatgtgatgtttgtaaaaaatctttcaaattttcaagtacTTTGAAAATTCATGAACGTTTACATAGTGGTGAGAAACTTcataagtgtgacgtttgtcgTAAGTGTTTCGGCGCAtcagaaagtttaaaaatacacctgcgcatacatactggtgagaagccatacaaatgtgacgtttgtaataaatgtttcatgacAAAACGTGATTTGGGAAGACACCAACGTTTACATACTGGTGAGCACCAAtatcaatgtgatgtttgtaataagagtttcaaaTGGTCaagtaatttgaaaaaacacCAGCGAtctcatactggtgagaaaatacataagtgtgacgtttgtcaTAAGTGTTTCAACGAtccaagtaatttaaaaaaacaccagcttttacatactggtgagaagtcATATCAATgcgatgtttgtaataaaaatttcagtagtTCAAGTAGTTTGAAAAAACACCAACGAtctcatactggtgagaaactatataaatgtgacgtttgtcaTAAGTGTTTCAGCGAATCAACTGGTCTAAAAATACACTTGcgcatacatactggtgagaagccatataaatgtgacgtttgtaataagtgtttcacgACAAATGGTGATTTGGGAAAACACCAACGTTTACATACTGGTGAGCAGccatatcaatgtgatgtttgtaataagagtttcagtAATTCAGGTAATTTGAAAAAACACCAGCGGTCTCATACTGATGAGATGCCATATCAGTgtgatttttgtaataaacttttcaagcacttaagtaatttcaaaaGGCACCAACgggtacatactggtgagaagccgtataggtgtgatgtttgtaataagtggTTCAGCGAATCAGGTGCTTTGAGAATACACCAACGCGTACATACTAATGAGAAGCCAcataagtgtgacgtttgtaataagtgttttagCCTGCCAAGTGGTTTGAGACTGCACCAGCGCATACATACTAGCGAGagaccatatcagtgtgacatttgtaatcgTTGTTTCAGTGAATCAGATAGTTTGAGTAATCACCAACTcgtacatactggcgagaaaccacatttgtgtaaaatttgtaataagagtttcgtCAAACTATATAATTTGAGAACACACCAACGTGTACATACCGGTGAAAAGccatatcaatgtgatgtttgtaacaaaaatttttcCAGATTGGCCGGTTTATACCAACACAAATCTAAACATccatcaaatatttaa
Protein Sequence
MENISLCKKSISGMCRLCLSSDRALIDMSSFSSELKSLIAHAVTKCTSVHVEEYSELPRTICESCYMQHIKIDNFQMQALTSDRIPQLYLQKMQEDDKQNICGSSVLLPDIDGDSSLVSDVVNQATEDNSEGIKHENENFESDSEKLDIEENKVFALDSKPHMGWDNVIVKSEPKINDNDQCDHDTKIFTDFAVHEKTIKSENEVFNDDQCEKVHKCDVCNKCFMTNGDLGRHQRLHIDDQQYQCDVCNKNLRSSIYLKRHQQSHTCEKIHKCDVCHKCFNHSSNLKKHERIHTGEKPYQCTVCNKCFNDFTTFSRHQNVHSDEKRYQCDVCKKSFKFSSTLKIHERLHSGEKLHKCDVCRKCFGASESLKIHLRIHTGEKPYKCDVCNKCFMTKRDLGRHQRLHTGEHQYQCDVCNKSFKWSSNLKKHQRSHTGEKIHKCDVCHKCFNDPSNLKKHQLLHTGEKSYQCDVCNKNFSSSSSLKKHQRSHTGEKLYKCDVCHKCFSESTGLKIHLRIHTGEKPYKCDVCNKCFTTNGDLGKHQRLHTGEQPYQCDVCNKSFSNSGNLKKHQRSHTDEMPYQCDFCNKLFKHLSNFKRHQRVHTGEKPYRCDVCNKWFSESGALRIHQRVHTNEKPHKCDVCNKCFSLPSGLRLHQRIHTSERPYQCDICNRCFSESDSLSNHQLVHTGEKPHLCKICNKSFVKLYNLRTHQRVHTGEKPYQCDVCNKNFSRLAGLYQHKSKHPSNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-