Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000135.1:39528-42278[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.12 3.2 8.9 2.5 1 21 55 75 55 76 0.96

2 26 2.8e-06 7.8e-05 23.5 2.8 1 23 111 133 111 133 0.99

3 26 1.1e-05 0.0003 21.6 4.6 1 23 139 161 139 161 0.99

4 26 0.0012 0.034 15.1 0.5 1 23 167 189 167 189 0.99

5 26 1.1e-05 0.0003 21.6 1.6 1 23 195 217 195 217 0.98

6 26 0.0083 0.23 12.6 7.1 1 20 223 242 223 244 0.95

7 26 0.004 0.11 13.6 2.7 1 23 267 289 267 289 0.95

8 26 0.00016 0.0045 17.9 4.9 1 23 295 317 295 317 0.98

9 26 0.012 0.32 12.1 7.6 1 23 323 345 323 345 0.97

10 26 0.00011 0.003 18.5 0.8 1 23 351 373 351 373 0.98

11 26 4.3e-06 0.00012 22.9 1.8 1 23 379 401 379 401 0.98

12 26 1e-06 2.8e-05 24.9 3.4 1 23 407 429 407 429 0.99

13 26 0.00029 0.008 17.1 2.1 1 23 435 457 435 457 0.98

14 26 0.0021 0.057 14.5 0.3 1 23 466 488 466 488 0.99

15 26 0.0003 0.0083 17.1 7.4 1 23 577 599 577 599 0.97

16 26 0.012 0.32 12.1 2.1 1 23 605 627 605 627 0.98

17 26 2.9e-05 0.0008 20.3 0.5 1 23 633 655 633 655 0.99

18 26 0.0062 0.17 13.0 4.5 1 20 661 680 661 683 0.95

19 26 0.00034 0.0093 16.9 4.9 1 23 689 711 689 711 0.98

20 26 0.00035 0.0096 16.9 3.7 1 23 717 739 717 739 0.98

21 26 5.6e-05 0.0015 19.4 5.7 1 23 745 767 745 767 0.99

22 26 5.2e-05 0.0014 19.5 2.2 1 23 773 795 773 795 0.96

23 26 0.00018 0.005 17.8 6.2 1 21 801 821 801 823 0.93

24 26 0.0006 0.016 16.1 3.2 1 23 829 851 829 851 0.98

25 26 7e-05 0.0019 19.1 3.3 1 23 857 879 857 879 0.99

26 26 0.0027 0.073 14.1 2.0 1 23 885 907 885 907 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.12	3.2	8.9	2.5	1	21	55	75	55	76	0.96
2	26	2.8e-06	7.8e-05	23.5	2.8	1	23	111	133	111	133	0.99
3	26	1.1e-05	0.0003	21.6	4.6	1	23	139	161	139	161	0.99
4	26	0.0012	0.034	15.1	0.5	1	23	167	189	167	189	0.99
5	26	1.1e-05	0.0003	21.6	1.6	1	23	195	217	195	217	0.98
6	26	0.0083	0.23	12.6	7.1	1	20	223	242	223	244	0.95
7	26	0.004	0.11	13.6	2.7	1	23	267	289	267	289	0.95
8	26	0.00016	0.0045	17.9	4.9	1	23	295	317	295	317	0.98
9	26	0.012	0.32	12.1	7.6	1	23	323	345	323	345	0.97
10	26	0.00011	0.003	18.5	0.8	1	23	351	373	351	373	0.98
11	26	4.3e-06	0.00012	22.9	1.8	1	23	379	401	379	401	0.98
12	26	1e-06	2.8e-05	24.9	3.4	1	23	407	429	407	429	0.99
13	26	0.00029	0.008	17.1	2.1	1	23	435	457	435	457	0.98
14	26	0.0021	0.057	14.5	0.3	1	23	466	488	466	488	0.99
15	26	0.0003	0.0083	17.1	7.4	1	23	577	599	577	599	0.97
16	26	0.012	0.32	12.1	2.1	1	23	605	627	605	627	0.98
17	26	2.9e-05	0.0008	20.3	0.5	1	23	633	655	633	655	0.99
18	26	0.0062	0.17	13.0	4.5	1	20	661	680	661	683	0.95
19	26	0.00034	0.0093	16.9	4.9	1	23	689	711	689	711	0.98
20	26	0.00035	0.0096	16.9	3.7	1	23	717	739	717	739	0.98
21	26	5.6e-05	0.0015	19.4	5.7	1	23	745	767	745	767	0.99
22	26	5.2e-05	0.0014	19.5	2.2	1	23	773	795	773	795	0.96
23	26	0.00018	0.005	17.8	6.2	1	21	801	821	801	823	0.93
24	26	0.0006	0.016	16.1	3.2	1	23	829	851	829	851	0.98
25	26	7e-05	0.0019	19.1	3.3	1	23	857	879	857	879	0.99
26	26	0.0027	0.073	14.1	2.0	1	23	885	907	885	907	0.96

Sequence Information

Coding Sequence: ATGGAAACAACAGTGCTAAATTGTATGAAACCAAACGATAAATTAGATCATATTCCAATTAGAGCAAATAGCAGTAACTCAATAATGAACGATCCAGGCGTAAAACTAGAAATCAATTTAGATGAAACATTAGCAAATTTATACGATACAGCGTATGGCGAATACAAATGCGACAATTGTCTACAATATTTTAGTGATAGAACGCGGCTACAGAATCACCAATGCGCTCAAAGTGCTTCACAACCAGCTGCGTTACCTCCGCCGCCTCCTCCTCCTCCACCACAACCGAGTAATGACGCACAGAAAAagaacgatataaaaaaatttaactatcAATGTGATGTATGTGGCAAATGTTTTAAGGCTCCGAGTAAACTAACAACACATTATCGGTCACATACCGGTGAACGGCCAtttcagtgtgacatttgcagTAAACGATTTTCTCAAAATTGCGACTTGATCCGACACAGACGTCGGCACGTAAGCGATAAACCGTTTCGATGCGATGTTTGTATCAGGTACTTTAATTCCGCCGACGGCTTGAAAATACATCAACGAACTCACACGGGTCAAGAGCATTATCAATGTGACATCTGCAGTAAACGATTTAGTTACTCcggcagtttaaaaatacataaacgtctacatactggtgaaaaaccgtaTCAATGCAGTAAGTGTTATAAATGTTTTACACAGAAGAGTACGATGAATACGCATCGATGCGGCGATGCCCCCCGAGTTCGGAAGAAGCCCGCGCCTGGCACGATAAAAAAACGTACCGAACAGAAACCGTACCTCTGCGACATTTGTTTCAAATGTTTCAGTGCTCCAAGTAAATTAGCTACTCATAAACGGTTTCATACCGGAGAAAAACCGTTCCAATGCGATTTATGCGATAAAAGGTTTATACAGAATTGTGACTTGACGAGACATAAACGATTCCATACAGTCGAGAGACCTCATAAATGCGATTCGTGTTCTCGAAGCTTCACGCAGAAATGCGATTTaatcaaacataaaaagaaTCACGCGAAAAATAAACCTTATAAATGTAACGTCTGCAATAAATATTACTCTTCGCTCGGTAGTTTGAAAGCGCATAAACTGATTCACGACGATAAAAAGTGCTTtcaatgtgatgtttgtaaaaagCGGTTCACGTTTTCGAGTAATTTGATTGCTCATAAACGATTACATTTCGGTGAGAAACCGTACGAATGCAAGATTTGCGGGAAACGATTCgctcacaaaaataatttaaaaattcataagcGGTCGCATAATAAGAATAAACACTATCAGTGCACTATTTGtgataaaaacttttccgaCTTGAAAGTGTTCAAATCACATAAACAAATGCATGAAGATGATACGAGCGAAAAACCTTACAAATGCGATGTTTGTAGCGAAGGTTTCGATTTGACAAGTGAACTTAATGCACACAAAAAATCTCATGAAAAGAAAACAGACGTTGATTTTGTTCCGGATATTAAAGAGGAAAGCGATGACGAAGACGATTTCGTGCTCGCAACGTTAATCAACAATGACATGTCAAGCGACGATGAAACAGAACGTAAAACGCAAAACAAGGATATGTCGAACGAAATTAAGGAAGAAAGTGCGGCGAACGATTTTCCTAATTCATTGCTCGAGAACGCGGTGACTATATCGGAAGACAAACTGACGTTCAAAATTAACTTGAAGACGTTGGAGAAACCttaccagtgtgacgtttgcagtAAACGTTTTTGTCATTCCAGCAGTTTAAAGAAACATAAGTTGAATCATACCGGTCAAAGGACGTTCCAGTGCGAATTGTGCGATAAAAGTTTCTTTCAGCTGCAAATATACAAATCGCATCAACGTCTTCACACaggtgagaaaccataccagtgtgacgtttgcagtAAGAGTTTCAGTCAAATGGGTGGCCTGATTTCGCATAAACGTTCACATACCGGAGAGAAACCTTATAAATGTGAAATTTGCGACAAACGGTTCGGTCATATCAGTAACTTGTACACGCATAAACTGTGTCACAACGAAGGCAAAAGATACCAGTGCGATATTTGCGCAAAGTGTTTCCGACATTCGACAAGTCTAAATACTCATAAACTTATTCACTCGGGCATAAAACCTCACAAATGCGACATTTGTTCAAAAGCGTTCTCGAAATTGAATAAACTCAAATCGCATAAACGCGtccataccggtgagaaaccttaTAAGTGTGAAATGTGTGACAGATGCTTCTCGCATTTAACAGCAATGCGATCGCACATGCGATcacatactggagagaaaccgtacctcTGCGATGTGTGCAGTAAAAGCTTCAGTCAGTTGAACACCCTGAAAACTCATAAACGCACTCACAGCGGGAATAAACCATATTTGTGCGATGTATGCGATAAGTGTTTTAACAGCTCGTCCAATCTGAAAACACATCAGCGTTGCCATACTGGGGAAAAACCGTTTCATTGCGATATGTGTGAGAAACAGTTCTCCCAAAAGAACGCTCTCGTGTCACATAAACGTTctcatacaggagagaaaccgtttCAATGCGATGTGTGTTATAAATCGTTTTCATATTCGACTTATTTGAAGGAACATAAACGATCGCATACAGGAGAAAAACCACACATGTGCAATATTTGTTATAAGCCGTTTAATTATCTAAGTGCGTTGTATACTCATAAACGCGcccataaaaaaaatcttgcgaATGCAGTTGAATAA
Protein Sequence: METTVLNCMKPNDKLDHIPIRANSSNSIMNDPGVKLEINLDETLANLYDTAYGEYKCDNCLQYFSDRTRLQNHQCAQSASQPAALPPPPPPPPPQPSNDAQKKNDIKKFNYQCDVCGKCFKAPSKLTTHYRSHTGERPFQCDICSKRFSQNCDLIRHRRRHVSDKPFRCDVCIRYFNSADGLKIHQRTHTGQEHYQCDICSKRFSYSGSLKIHKRLHTGEKPYQCSKCYKCFTQKSTMNTHRCGDAPRVRKKPAPGTIKKRTEQKPYLCDICFKCFSAPSKLATHKRFHTGEKPFQCDLCDKRFIQNCDLTRHKRFHTVERPHKCDSCSRSFTQKCDLIKHKKNHAKNKPYKCNVCNKYYSSLGSLKAHKLIHDDKKCFQCDVCKKRFTFSSNLIAHKRLHFGEKPYECKICGKRFAHKNNLKIHKRSHNKNKHYQCTICDKNFSDLKVFKSHKQMHEDDTSEKPYKCDVCSEGFDLTSELNAHKKSHEKKTDVDFVPDIKEESDDEDDFVLATLINNDMSSDDETERKTQNKDMSNEIKEESAANDFPNSLLENAVTISEDKLTFKINLKTLEKPYQCDVCSKRFCHSSSLKKHKLNHTGQRTFQCELCDKSFFQLQIYKSHQRLHTGEKPYQCDVCSKSFSQMGGLISHKRSHTGEKPYKCEICDKRFGHISNLYTHKLCHNEGKRYQCDICAKCFRHSTSLNTHKLIHSGIKPHKCDICSKAFSKLNKLKSHKRVHTGEKPYKCEMCDRCFSHLTAMRSHMRSHTGEKPYLCDVCSKSFSQLNTLKTHKRTHSGNKPYLCDVCDKCFNSSSNLKTHQRCHTGEKPFHCDMCEKQFSQKNALVSHKRSHTGEKPFQCDVCYKSFSYSTYLKEHKRSHTGEKPHMCNICYKPFNYLSALYTHKRAHKKNLANAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511012;
90% Identity: iTF_01511012;
80% Identity: -