Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000021.1:2472742-2485964[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 2e-05 0.00055 20.8 1.4 2 23 160 181 159 181 0.97

2 30 6.3e-05 0.0017 19.2 1.9 1 23 189 211 189 211 0.98

3 30 0.0041 0.11 13.5 0.3 1 23 217 239 217 239 0.98

4 30 0.96 26 6.1 0.7 2 23 245 267 244 267 0.95

5 30 0.0014 0.04 14.9 3.0 1 23 272 294 272 294 0.97

6 30 0.061 1.7 9.8 0.4 3 23 302 323 300 323 0.90

7 30 1.2 32 5.8 0.7 2 23 331 349 331 349 0.80

8 30 8.9e-05 0.0025 18.7 2.2 1 23 356 379 356 379 0.97

9 30 0.0031 0.084 13.9 0.8 3 23 389 409 388 409 0.98

10 30 9.1e-06 0.00025 21.9 2.8 1 23 415 437 415 437 0.97

11 30 3.6e-05 0.001 20.0 0.3 1 23 443 465 443 465 0.98

12 30 0.00056 0.015 16.3 4.7 1 23 560 582 560 582 0.96

13 30 0.0088 0.24 12.5 1.4 1 23 588 611 588 611 0.96

14 30 1.6 45 5.3 0.5 2 23 619 637 619 637 0.74

15 30 0.0055 0.15 13.1 1.1 1 23 644 667 644 667 0.95

16 30 0.00073 0.02 15.9 0.4 3 23 677 697 676 697 0.98

17 30 6e-06 0.00017 22.4 2.1 1 23 703 725 703 725 0.99

18 30 4e-06 0.00011 23.0 0.4 1 23 731 753 731 753 0.98

19 30 0.0009 0.025 15.6 0.2 2 23 930 951 930 951 0.97

20 30 0.0003 0.0083 17.1 5.1 1 23 959 981 959 981 0.98

21 30 0.0043 0.12 13.4 0.4 1 23 987 1009 987 1009 0.98

22 30 0.0011 0.031 15.3 0.2 2 23 1015 1036 1014 1036 0.96

23 30 0.0049 0.13 13.3 0.4 1 23 1041 1063 1041 1063 0.91

24 30 0.00093 0.026 15.5 2.7 1 23 1069 1092 1069 1092 0.97

25 30 4.6 1.3e+02 3.9 2.4 2 23 1100 1118 1099 1118 0.86

26 30 0.007 0.19 12.8 2.1 1 23 1125 1148 1125 1148 0.95

27 30 0.00065 0.018 16.0 2.7 3 23 1159 1179 1158 1179 0.99

28 30 1.8e-05 0.00051 20.9 0.3 3 23 1187 1207 1185 1207 0.96

29 30 2.2e-05 0.0006 20.7 0.3 1 23 1213 1235 1213 1235 0.98

30 30 5.2e-06 0.00014 22.6 1.1 1 23 1241 1263 1241 1263 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	2e-05	0.00055	20.8	1.4	2	23	160	181	159	181	0.97
2	30	6.3e-05	0.0017	19.2	1.9	1	23	189	211	189	211	0.98
3	30	0.0041	0.11	13.5	0.3	1	23	217	239	217	239	0.98
4	30	0.96	26	6.1	0.7	2	23	245	267	244	267	0.95
5	30	0.0014	0.04	14.9	3.0	1	23	272	294	272	294	0.97
6	30	0.061	1.7	9.8	0.4	3	23	302	323	300	323	0.90
7	30	1.2	32	5.8	0.7	2	23	331	349	331	349	0.80
8	30	8.9e-05	0.0025	18.7	2.2	1	23	356	379	356	379	0.97
9	30	0.0031	0.084	13.9	0.8	3	23	389	409	388	409	0.98
10	30	9.1e-06	0.00025	21.9	2.8	1	23	415	437	415	437	0.97
11	30	3.6e-05	0.001	20.0	0.3	1	23	443	465	443	465	0.98
12	30	0.00056	0.015	16.3	4.7	1	23	560	582	560	582	0.96
13	30	0.0088	0.24	12.5	1.4	1	23	588	611	588	611	0.96
14	30	1.6	45	5.3	0.5	2	23	619	637	619	637	0.74
15	30	0.0055	0.15	13.1	1.1	1	23	644	667	644	667	0.95
16	30	0.00073	0.02	15.9	0.4	3	23	677	697	676	697	0.98
17	30	6e-06	0.00017	22.4	2.1	1	23	703	725	703	725	0.99
18	30	4e-06	0.00011	23.0	0.4	1	23	731	753	731	753	0.98
19	30	0.0009	0.025	15.6	0.2	2	23	930	951	930	951	0.97
20	30	0.0003	0.0083	17.1	5.1	1	23	959	981	959	981	0.98
21	30	0.0043	0.12	13.4	0.4	1	23	987	1009	987	1009	0.98
22	30	0.0011	0.031	15.3	0.2	2	23	1015	1036	1014	1036	0.96
23	30	0.0049	0.13	13.3	0.4	1	23	1041	1063	1041	1063	0.91
24	30	0.00093	0.026	15.5	2.7	1	23	1069	1092	1069	1092	0.97
25	30	4.6	1.3e+02	3.9	2.4	2	23	1100	1118	1099	1118	0.86
26	30	0.007	0.19	12.8	2.1	1	23	1125	1148	1125	1148	0.95
27	30	0.00065	0.018	16.0	2.7	3	23	1159	1179	1158	1179	0.99
28	30	1.8e-05	0.00051	20.9	0.3	3	23	1187	1207	1185	1207	0.96
29	30	2.2e-05	0.0006	20.7	0.3	1	23	1213	1235	1213	1235	0.98
30	30	5.2e-06	0.00014	22.6	1.1	1	23	1241	1263	1241	1263	0.98

Sequence Information

Coding Sequence: ATGATTCAAACGAAAATAAAAGACGATCAAGAAGATGAACAAAAGAACACGAAAATAGATCAACATACCGTAAACGAATCTATTAAACAAGAAATAATCGTGAAACCCGATTTTGATTCAGAGAACGAATCGTTGAGTTGTCTTCAATCACTTATTAACATAAAAGAAGAAATCGACAGAAACAGTGACTGTTCGAATTCAGGTACGAAAAAAGAGATTGACTTACCGAATGATTTCGATAACGAGCCTAGCGATGACGATAGCGTTAACGGCGCAGATGACGTCAGCGAAAAAAGTGAAGATGACTGTAAAGATGAAATGAGTAACGATGATTATAAAGAAGATGATTCCAcgcaacaaaacaaaataattatatttaaagtgAATCCGGATAAAAATTCCGGCGAAATAATAAAACGGTATCCTCCGAAACCACCGGTGACTCTCGACCCTGAAAAATGTGATTTAGAGGCACTAATGTGCAAAATTTGTGGTAAAACATTAGTGACTAAACACACTTTAGCGCGACACATGGAAACTCATAACGAAAATAGGAAAATTACGCATACATGTCCGACTTGCAACAAACCTTTTTATAACGTCGGTCAATATAACAAACATATGCGATGGCATGAAGGGAAAACGAGGTACAACTGTGAAATCTGTAATAAACCGTTCTTTGAGTTGAGCGCGCAAGCAGTACACATGAAAAAACACAAAGTTAAACCGATGTCGTGCGACATTtgtcaaaaacagtttttagttaaattgcagttagaaattcataaaaaaaagatgCACGAAAAAAAAGAATACTTCTGTTCGATCTGTAGTAAAAGTTTTCCTCAACAGTGTCTTGTAAAAAAACACGAACGAATTCATACGACCGAGAAACCGTTTTTGTGTATTAAGTGCTCGGCTAGTTTTAAACAAGAGTGGTCGTTGCGTATTCATATGAATAATGTGCATTCGGAAAATTCGCACAAAGAAGTGTGCAATATTTGCGGCAAATCGGTTAAGAAACTGCGatACCACATGGTGACCCATCAGAACAGAGAAAAAAGGCACAAATGCGGAAAATGCGATCAGTCATTCTACACGGGTTACAGTCTCAACGCGCATATGCGAGTCAAACATGCAACAGAGAAACCCTGCCTCGCTCTATGTCCGGTTTGCGGAAAACAGTGCGAAACGATCGGTTATTTAAATGCCCATATGCATATACATAAAGCTGAACGTCCCCATTCCTGTAACGACTGTGGCAAAAGTTTCAAATTAAAAGTTCAATTGAAAAGCCACCAGATTACTCATACGGATTCAAGGCCGTTCGTTTGCAGTATGTGTGGACGAGGGTTCACGGCCAAGAGTGTCTTAAAGAAACATATCCTAACTCACACTGaagAAGACAGTAACGAAAATAATGCTCAAAACGATCaaatagatattcaaaatcgtCTCCCGTCAATTGTTCATCAAACAAATGAAGACCAAGTCGATATTAGCTGTAAAGATGACAAAGGTAGTGAAAAATACTACAGCGATTGTAGTGAAAAATCGAACGATGAAGATGCTAGTACGGATGAACcgttacaaaaaaatgaaatcgttATTTTCAAAGTAAACTCAGtTAAATTGCAACTGGAAATTCATAAAAAGAAAGAACACGAAAAGAAAGAATATCTTTGTCCGGTTTGTAATaagaaatttcataaaaaatatctactgAAGAAACACGAAAAAACTCACAACCCAGAGAAGCCTTTTATGTGCGTGAAGTGTTCGGCAAATTTTAAACACGAACGATCGTTACGTATTCATATGGAATCGATACATACCGACAATATACCTAAAGAAGTGTGTAATATTTGTGGCAAATCGGTTAAAAAGTTAAGGTATCACATGGTAATGCACCAAAAGAGAGAGCGAATATACAAATGTGAAAAATGCGATCAAGCGTATTACACTGGCTACAGTCTAAACGCCCACGTGAAATTTAAACACTCGGCGGAAAAACCTTGTTTGGCATTATGCCCCATCTGTGGAAAACAGTGCGAAACAATCGGTTATTTAAACACGCATATGCAAATACATAAAACTGATCGACCTTATACGTGCAACGAATGCGACAAAagctttaaattaaaacttcaactgAAAAGACATCAAGCGACTCATACGGACATACGACCCTTTGTTTGTAGTATGTGTGGGCGAGGTTTTAAGGACAACAGTGTTCTAAAGAAACACATTCTTACTCACACCGACGACCGCTTGCCATCTCATATATGTTATGATTGCTCTTACGAAGTCGAAAAATCGTTCAAATTTAAACAAGACTGTGAAAGGCACGATCGGTTATTAAAAAGAATTCTTAAAGATTACGACGACGAACAAAAACAGCTGTCCTTTCAACTAGCGCTTGTTAAAGAAGAAACTACGAATGAACGAAatgataaacaaataaaagaagaagaaataaaagaagaaaGCGGCAATGAAAACAATGACGACAATCTCAGTGACCTATGGAAGCAAGAAGAAAATGACGACTTCGAAGATGATGAAAAAGATCTGAAAAACGGTAGTTATGTCGATAATACAGAAACGGTTATAAAGTCTGAAGAAAAAGAAGATCAACTGAAAAGTGAACATCTGAATAACAGCAGAAACgatcatttaattttgaatattaaatcgTGTACAGTGGGAGGCAGTAATACCAACAAAGAAGCACCAAAAAAACCAGCCTTGTACTTCGATCCAGAAAAATGCGACGAAAAAACGCGAACGTGCAAAATTTGCAACAAAGccttagtcaatatttattcgTTAGCCCGTCACATGGAGATGCATAACGAAAACCGCAAATTTGCACACACTTGTAAAGTTTGCAGCAAAGGTTTTTACGAACTGGGACATTTAACAAAACACATGCGCCGGCACGAAGGAAACAAAAGATACTTCTGCGAGATATGTAACAAAGGATTTTACGAACTCAGCGCGCAAGCCGTCCACATGAAGAAGCACAAAGTCAAACCGATGCCTTGCGACGTTTGCGGGAAAAAGTTCGTCGTTAAATTACAACTGGAAATTCACAAAAAGTCGCACGAAGAATTCAAACATTTCTGTCCTGATTGTGGCAAAGGTTTTCCGGCGTTACGtctcttaaaaaaacattctgtcGTCCACAATAAAGAAAAGCCTTTCATGTGTTTAGAATGCAACGGGTTCTTCAAACATGAATCTACCCTACGCAAACATATTAAAACGATCCATGAAGGTATTAAAGAACGGGACGTTTGTAATGTTTGTGGCAAATCGGTGTcttgtttaaaatatcatatgttTAAACATTACGGCGGGGAGAAAAGATTTAAATGCAACGAGTGCCCGTTCGCGTTTCATTTGAACAGTCAGTTGACCCAACACGTTTTACAAAAACATCGCGGTGAGAAGCGATCATGTACTGTTTTGTGTACGATTTGCGGTAAAGAATGCCACTCCCCGCGAGATTTGGAAATACACATGAGGAAACATACGGGTGAAAAACCGCTTGCTTGTACGTCGtgcgacaaaaaatacaaaacgccTTCGGCACTACAGGTTCATATAAGGTCGCATACTAACGAACGGCCTTATATTTGTAGTATCTGCGGTAAAGGATTCTTTACCAGCacggttttaaaaaatcacatcaGGATTCATACCGGAGAACGACCGTTCGTTTGTCAGTTGTGTCAAAGAGCGTTCACGCAAAAAGTGGCGCTCAAAACTCATATGAAAACTCATTGA
Protein Sequence: MIQTKIKDDQEDEQKNTKIDQHTVNESIKQEIIVKPDFDSENESLSCLQSLINIKEEIDRNSDCSNSGTKKEIDLPNDFDNEPSDDDSVNGADDVSEKSEDDCKDEMSNDDYKEDDSTQQNKIIIFKVNPDKNSGEIIKRYPPKPPVTLDPEKCDLEALMCKICGKTLVTKHTLARHMETHNENRKITHTCPTCNKPFYNVGQYNKHMRWHEGKTRYNCEICNKPFFELSAQAVHMKKHKVKPMSCDICQKQFLVKLQLEIHKKKMHEKKEYFCSICSKSFPQQCLVKKHERIHTTEKPFLCIKCSASFKQEWSLRIHMNNVHSENSHKEVCNICGKSVKKLRYHMVTHQNREKRHKCGKCDQSFYTGYSLNAHMRVKHATEKPCLALCPVCGKQCETIGYLNAHMHIHKAERPHSCNDCGKSFKLKVQLKSHQITHTDSRPFVCSMCGRGFTAKSVLKKHILTHTEEDSNENNAQNDQIDIQNRLPSIVHQTNEDQVDISCKDDKGSEKYYSDCSEKSNDEDASTDEPLQKNEIVIFKVNSVKLQLEIHKKKEHEKKEYLCPVCNKKFHKKYLLKKHEKTHNPEKPFMCVKCSANFKHERSLRIHMESIHTDNIPKEVCNICGKSVKKLRYHMVMHQKRERIYKCEKCDQAYYTGYSLNAHVKFKHSAEKPCLALCPICGKQCETIGYLNTHMQIHKTDRPYTCNECDKSFKLKLQLKRHQATHTDIRPFVCSMCGRGFKDNSVLKKHILTHTDDRLPSHICYDCSYEVEKSFKFKQDCERHDRLLKRILKDYDDEQKQLSFQLALVKEETTNERNDKQIKEEEIKEESGNENNDDNLSDLWKQEENDDFEDDEKDLKNGSYVDNTETVIKSEEKEDQLKSEHLNNSRNDHLILNIKSCTVGGSNTNKEAPKKPALYFDPEKCDEKTRTCKICNKALVNIYSLARHMEMHNENRKFAHTCKVCSKGFYELGHLTKHMRRHEGNKRYFCEICNKGFYELSAQAVHMKKHKVKPMPCDVCGKKFVVKLQLEIHKKSHEEFKHFCPDCGKGFPALRLLKKHSVVHNKEKPFMCLECNGFFKHESTLRKHIKTIHEGIKERDVCNVCGKSVSCLKYHMFKHYGGEKRFKCNECPFAFHLNSQLTQHVLQKHRGEKRSCTVLCTICGKECHSPRDLEIHMRKHTGEKPLACTSCDKKYKTPSALQVHIRSHTNERPYICSICGKGFFTSTVLKNHIRIHTGERPFVCQLCQRAFTQKVALKTHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -