Vnig000922.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000002.1:4653248-4656861[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.012 0.32 12.1 4.8 1 23 39 61 39 61 0.98 2 30 0.0001 0.0028 18.6 3.0 1 23 67 90 67 90 0.95 3 30 0.32 8.9 7.6 0.2 1 23 97 119 97 119 0.97 4 30 7.8e-05 0.0022 18.9 1.5 1 23 125 148 125 148 0.94 5 30 0.00043 0.012 16.6 1.0 1 23 153 176 153 176 0.97 6 30 2.4e-05 0.00067 20.5 0.7 1 23 185 207 185 207 0.96 7 30 0.00032 0.0088 17.0 0.1 1 23 210 232 210 232 0.98 8 30 0.064 1.8 9.8 0.6 2 23 239 260 238 260 0.78 9 30 1.8e-05 0.0005 20.9 0.5 1 23 266 288 266 288 0.98 10 30 0.00029 0.008 17.1 0.9 2 23 365 387 364 387 0.96 11 30 0.00019 0.0051 17.7 0.4 1 23 393 416 393 416 0.97 12 30 0.0013 0.037 15.1 0.2 2 23 423 444 422 444 0.96 13 30 0.00034 0.0095 16.9 0.5 1 23 448 471 448 471 0.96 14 30 0.0057 0.16 13.1 0.8 1 23 476 499 476 499 0.95 15 30 1.5e-05 0.0004 21.2 0.9 1 23 508 530 508 530 0.98 16 30 0.0011 0.03 15.3 0.1 1 23 533 555 533 555 0.97 17 30 0.00034 0.0093 16.9 1.3 2 23 562 583 561 583 0.96 18 30 7.5e-06 0.00021 22.1 0.7 1 23 589 611 589 611 0.97 19 30 2.9 81 4.5 0.5 1 13 617 629 617 630 0.91 20 30 9.4 2.6e+02 2.9 4.4 2 23 679 700 678 700 0.95 21 30 0.0082 0.23 12.6 1.8 3 23 708 729 707 729 0.95 22 30 0.005 0.14 13.3 1.3 2 23 736 758 735 758 0.97 23 30 0.0031 0.086 13.9 0.7 2 23 765 786 764 786 0.97 24 30 0.00037 0.01 16.8 2.7 1 23 790 813 790 813 0.96 25 30 0.011 0.31 12.2 0.7 1 23 818 840 818 840 0.97 26 30 3.3e-06 9.1e-05 23.3 2.5 2 23 850 871 849 871 0.97 27 30 0.0018 0.051 14.6 1.6 1 23 875 897 875 897 0.97 28 30 0.021 0.57 11.3 0.2 2 23 904 925 903 925 0.86 29 30 1e-06 2.9e-05 24.8 0.2 1 23 931 953 931 953 0.98 30 30 0.018 0.49 11.5 2.5 1 23 959 982 959 982 0.98
Sequence Information
- Coding Sequence
- ATGATTGAAACAATAAAAGAAGAAGCCATCGAAGATTATCAGACCGACCAGAAGCCTGAAATAATCATGGCTAATATGCTTTATACAGAGGGATTTATGCAGGTTAACGACGGCTTTCAATGCAAAACGTGCGGTCAGGTTTGTAAGTCAAAGAAAGTGTGGAAAAGACACTACTTGAGACACGTCACCGACAGACCGTTCAGCTGTGAGATTTGCGGCAAGTGCTATAAATCAACAGACCAGCTAAAGTCGCACAATCGCCAAGTGCACCAGGAAAACAGAAAGGTGTTCGCTTGCGACATTTGCGACTTGAAAGCTTCCAGTATGGCCGTATTAAAGAATCACCGATACACACATTTGAACATTTATCCTTTCAGCTGTACAAAATGCGACAAGAAGTTTCGTTCTAAAGCGGGCTTGATAAATCACACCCAGGGAAAGCACGAGGGCGTCTCTTATTACTGCGACGTTTGCGTCAAATCGTTTACGACAATATCCGGCCTGAACGACCACAAGAAGAAACAGCACGACCCGAACTACGTACGACCCGAATTCAAATGCGACGTGTGTCCCAAGAGCTATCCGACCAAAACCCTTCTGCGCAGGCACAGGGAGGGTCACGAGGGTTTCACTTGCGAAACGTGCGGTCTGGTGCTCGCCTCGAGAGCGGGACTCAAGCGTCATTTGCTCACGCATACCGGCGCCAAGCCTTTAACGTGCAAATATTGCGGCAAACATTTCGCCAGTAGTACTATTCTCGGACCGCATCTCAGAATACATACTGGAGCGAAACCGTACGAGTGCACGGTTTGCGGCAAACGGTTCAATCAGAGGAGTCCGATGGTGCTTCACATGAGGAACCACACCGGCGAAAGACCTTACAAGATTGTAAGAATAAAAGAAGAACCTGATCTAAAACTTGAAGAAGAGGATTATTCGGCGTTAAATCAACAGATTTCGTGGCTTAATCAAGGAGGAGATGATGCTTTTGTCGAAAAAGACGACGGCTTGCATTGTAAAAAATGCCCCGCTATAGTAAAGAAACACTATTGGTCGAGACACTGGACGAAACATACGACGTATAGACCAATAGTATGCGACATTTGCAATAAAACTTACAAAGATATGGAACAGATGAAGAAACATAGAAAACGAGTGCATTTGGAGAGAAAGGAATTCGTGTGCGATATATGCGGAACGAGACTAACCACCGAGGTTAGTTTGCAAAAGCACAGAAGGTACGTTCATTCTGAAAAGAAAACGCTTGAATGCGATCTGTGCGGCAACAAGTTTTCAAACGAAATCACTTTGAAAGCGCATTACAACATACACATAAATCCGTTCAATTGTCCGCAGTGCGATAAGAAATTGGCAACGAAAACGGCTTTGGAATCGCACATAAAGAACAAACACGAAGGCAGCAAATACCAGTGCGAcgtctgtaataaaattttcaactggCAGAGCAGCCTGTACGTTCATAAAAAAGAACAACACGATCCCAATTACGTGCGACCCGATTTTAGATGCGACATCTGCCCAAAAAGTTATCCGACAAGAACACTGTTGAGACGTCACAGAGAAAGTCATTCGGGCTTTGCATGCGAAACTTGCGGCATGGTGGTAGCGTCTAGAAACGGCTTAAAGAAACATTTGCTGACGCATACGGGTGCCAAGCCGTTGACGTGCAAATATTGCGGAAAGCATTTTACGACCAGTTCGGTTTTGGGACCGCACATGAGAATTCACACGGGAGAAAAGCCGCACGAATGCACTGTTTGCGGCAAACGGTTCAATCAGAGGAGTCCGCTTGTCATACATATGCGCGGACACACGGGGGAAAGACCCTATAAGTGTTCGCATTGTGTCGAGGCGTTTGTTAGCAAGAATATAAAAGTGAAAGAAGAGGAAGATGACGATGATGAGTCTTTAGATGATCAAGAATGTGTTGAAAGATCCGTTACAAGAAATATGAGAGTAAAGAAAGAAAATAGTCAAGAAATTAAGGGTTACGTTGTGAAAGCGGATGGATTGCATTGTAAAATGTGTTCGGCGGTCTGCAAATCGTTATACTTTTGGAGGAGACACTCCTTAATGCACGTGACAAAGAAAACAGTCGCATGCGACATTTGCAATAAAACCTATAAAGATATCGCTCAAATGAAGAAACATAAGAAACACGTTCATCTCGAcaagaaaattgtaaaatgtgaaTTATGCGACGTGAAACTGTCGAGTGAGGCGTATTTGAAACATcacatgaaaaaaatgcacgttGAAAAGAAAAAAGTGAAATGCGATCTTTGTGGAAATAAGTTTTCGAGTGAAATGACATTTAAAGCACACTATAAAATTCACGTGAATCCTTTTAATTGTAcgaaatgtgataaaaaattgaCGACAAAACACGCTTTGGAATTGCATATTAGAAATATGCACGAGGGTACAAAATATTATtgcgacgtttgtaataaagtttttaattggGAAAGCAGTTTGTCGTTGCATAAAAAGTTGCACGATCCGAATTTTATAAGACCCGCTTTGAAGTGTGAAGTTTGCGGTAAAACTTATCACACGAATTCAAATTTGAACCGGCATTTACAGAGCCATGGCGGCGGTCATCCGTGTGAAACTTGCGGTTTGGTGTTGTGCTCTAGAgaaggtttaaaaaaacatttgctcACTCATTCCGGTGCTAAACCGTTGACTTGTAAATATTGCGGAAAGAATTTTGCCAGCAGTTCGATTCTAGGACCTCATTTGAGAATTCACACGGGGGAGAAGCCCTATGTGTGCACGGTTTGCGGGAAACGGTTCAATCAACAGAGTCCTCTTATCATTCATATGAGAGGTCATACGGGGGAGCGACCTTATAAGTGCTCGCATTGTTTGGACGCCTTTATAAGTAGATCGCTGTTGAATAGTCACTTgcaaaaatttcatttacttGTTAAGTAG
- Protein Sequence
- MIETIKEEAIEDYQTDQKPEIIMANMLYTEGFMQVNDGFQCKTCGQVCKSKKVWKRHYLRHVTDRPFSCEICGKCYKSTDQLKSHNRQVHQENRKVFACDICDLKASSMAVLKNHRYTHLNIYPFSCTKCDKKFRSKAGLINHTQGKHEGVSYYCDVCVKSFTTISGLNDHKKKQHDPNYVRPEFKCDVCPKSYPTKTLLRRHREGHEGFTCETCGLVLASRAGLKRHLLTHTGAKPLTCKYCGKHFASSTILGPHLRIHTGAKPYECTVCGKRFNQRSPMVLHMRNHTGERPYKIVRIKEEPDLKLEEEDYSALNQQISWLNQGGDDAFVEKDDGLHCKKCPAIVKKHYWSRHWTKHTTYRPIVCDICNKTYKDMEQMKKHRKRVHLERKEFVCDICGTRLTTEVSLQKHRRYVHSEKKTLECDLCGNKFSNEITLKAHYNIHINPFNCPQCDKKLATKTALESHIKNKHEGSKYQCDVCNKIFNWQSSLYVHKKEQHDPNYVRPDFRCDICPKSYPTRTLLRRHRESHSGFACETCGMVVASRNGLKKHLLTHTGAKPLTCKYCGKHFTTSSVLGPHMRIHTGEKPHECTVCGKRFNQRSPLVIHMRGHTGERPYKCSHCVEAFVSKNIKVKEEEDDDDESLDDQECVERSVTRNMRVKKENSQEIKGYVVKADGLHCKMCSAVCKSLYFWRRHSLMHVTKKTVACDICNKTYKDIAQMKKHKKHVHLDKKIVKCELCDVKLSSEAYLKHHMKKMHVEKKKVKCDLCGNKFSSEMTFKAHYKIHVNPFNCTKCDKKLTTKHALELHIRNMHEGTKYYCDVCNKVFNWESSLSLHKKLHDPNFIRPALKCEVCGKTYHTNSNLNRHLQSHGGGHPCETCGLVLCSREGLKKHLLTHSGAKPLTCKYCGKNFASSSILGPHLRIHTGEKPYVCTVCGKRFNQQSPLIIHMRGHTGERPYKCSHCLDAFISRSLLNSHLQKFHLLVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -