Vnig010346.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000025.1:3091697-3094096[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3e-06 8.2e-05 23.4 0.9 1 23 268 290 268 290 0.98
2 18 4.5e-05 0.0013 19.7 4.2 1 23 296 318 296 318 0.99
3 18 4.7e-07 1.3e-05 25.9 2.1 1 23 324 346 324 346 0.99
4 18 2.2e-06 6e-05 23.8 1.0 1 23 352 374 352 374 0.99
5 18 7.7e-06 0.00021 22.1 2.1 1 23 380 402 380 402 0.99
6 18 4.7e-07 1.3e-05 25.9 2.1 1 23 408 430 408 430 0.99
7 18 2.2e-06 6e-05 23.8 1.0 1 23 436 458 436 458 0.99
8 18 3e-06 8.1e-05 23.4 1.5 1 23 464 486 464 486 0.99
9 18 2.6e-06 7.1e-05 23.6 2.3 1 23 492 514 492 514 0.99
10 18 1.4e-06 3.9e-05 24.4 4.2 1 23 520 542 520 542 0.99
11 18 9.9e-07 2.7e-05 24.9 5.0 1 23 548 570 548 570 0.99
12 18 1.2e-05 0.00034 21.5 2.7 1 23 576 598 576 598 0.99
13 18 1.3e-06 3.6e-05 24.5 5.8 1 23 604 626 604 626 0.99
14 18 0.00017 0.0047 17.9 0.7 1 23 632 654 632 654 0.98
15 18 2.5e-06 7e-05 23.6 1.6 1 23 660 682 660 682 0.99
16 18 8.8e-06 0.00024 21.9 1.7 1 23 688 710 688 710 0.99
17 18 1.9e-05 0.00052 20.9 3.0 1 23 716 738 716 738 0.98
18 18 3.7e-06 0.0001 23.1 2.4 1 23 744 766 744 766 0.98

Sequence Information

Coding Sequence
ATGACAGAAATATTGATACATGGATGCGACTTAAGTAGAATGTGTCGATTGTGTTTATCACGTGATGTAATATTATTAGACATATTTTTCTTGTCGCCCGAAATGATGAATCAAGTAGTTAATGTAATTGTTACATGTGCTCCCGTTAAGATTACGAAAAACGACGGAATGCCGAATTTCGTCTGCAAATTATGTTTCACTCGACTGAAGAAAATCCACGACTTCCAGATGCAAATAGTGCAATCTGACAAAACACTTCGACGCTATCTAGAGCAACTAGGCGGCCCTGACTCACACATCAAGAAATCATGTTCTATTCTGGAGCCTTCTGAGAAGCCGTCAATCTATGAAACTAACGCAGATGTGACAGGACCGATGAACGACAATTCGTTATCTTCCACTGAATGTGACAATGAAACTTTGTCAAATGAAATTAGCTGTGAAGACACAAAAATCGGTATTGGTGACATTATGTTGGATGAAGAGACGTCTGTCAACGGGATAGATGAAGAACCAGGGAACTTGGCGGATAAAATAAAGCGCGAAGTGTCTTCAAATTCCGAACATCAGTCTAATGTGTTAATTCGACCAGGTTTTCGTAATGACACAGGAAATGCTCCGTTAAGCGGTAACGGCAGTGAAATCAGCTGTGAAGATACAAATCCATGTGCTGGTCCCACAACGGAAAAATTTGCGATTCCTCCTACTGCTAATGTAAAGCGTGACAAACGTGAAGAGAACAATCAGAATATCTCTACAAATTCTACGAAACACAAaggaaataaaacaataaaaaaaacatttaactgTGGCGTTTGTGATAAGTACTTTTCTACTTCGGGCAATTTAAACGTTCACAAACGTACGCATACTGGTGTGAAACcatataagtgtgacgtttgtaataagagcttCGCTTTTTCGTGCGATTTAAAAGatcacaaacgtacacatactggcGACAAGCCCTATaagtgtgatgtttgtaataagagctttACTAAACCAAGCAAATTAAACGTTCACAAACGTACGCATACTGGTGTGAAACcatataagtgtgacgtttgtaataagagcttCGTTATTTCGAGCGATTTAAAAgttcacaaacgtacacatactggtgtgaaaccatataagtgtgacgtttgtaataaaagctTCGGTTTTTCGAGCGATTTAAAAGATCACAAACGTAGACATACTGGCGACAAGCCctataagtgtgacgtttgtaataagagctttACTAAACCAAGCAAATTAAACGTTCACAAACGTACGCATACTGGTGTGAAACcatataagtgtgacgtttgtaataagagcttCGTTATTTCGAGCGATTTAAAAgttcacaaacgtacacatactggcgagaagccctataagtgtgacgtttgtaataagagcttCGCTTTTTCGAGCGATTTTAAAGTTCACGAACGTACACATACTGGCGTGAAGCCctataagtgtgacgtttgtaataagggCTTTACTAAATCAAGCAAATTAAACGTTCACAAACGTACGCATACTGGTGTGAAACcatataagtgtgacgtttgcaataaatgttttactagtttgagtaatttaaaaattcacaacCGTACACATACCCATGAGAAACcgtataagtgtgacgtttgtaataagagctttACTACTTCGACccatttaaaaattcacaaacgtacgcatactggtgagaaaccgtataagtgtgacgtttgcaataagTGCTTCACTAGATTGGGCAATATAATAGTTCACAAACGTACACACACCCGAGAAAAACCgtataaatgtgacgtttgtaataaaagctTTACTAATTCGACCCATTTAAAAActcacaaacgtacacatactggcgtgaaaccgtataagtgtgacgtttgtaataagaattTTACTCAATTGTGGTATTTAGACGTTCACAAACGTGCACATGCTGGTGTGAGACcgtataagtgtgacgtttgtaataagagctttACTAATTCGGGCACTTTTAACGTTCACAAACGTGTACATACTGGTGTGAAACCGTAtacgtgtgacgtttgtaataagagctttAATAGTTCAGACTATTTTAACATTCACAAACGTATACATGCTGGTGTGAAACCGCAtacgtgtgacgtttgtaataagagctttAATCGATCGTGGTCCTTAAGCATTCACAAACGTACGCATACTGGCGTGAAACCGcataagtgtgacgtttgtaataagagcttCACTGAATTGGGCAATTTAAAAGCTCACAAACGTACACACACCCGTGAGAAACCTAATAATTAA
Protein Sequence
MTEILIHGCDLSRMCRLCLSRDVILLDIFFLSPEMMNQVVNVIVTCAPVKITKNDGMPNFVCKLCFTRLKKIHDFQMQIVQSDKTLRRYLEQLGGPDSHIKKSCSILEPSEKPSIYETNADVTGPMNDNSLSSTECDNETLSNEISCEDTKIGIGDIMLDEETSVNGIDEEPGNLADKIKREVSSNSEHQSNVLIRPGFRNDTGNAPLSGNGSEISCEDTNPCAGPTTEKFAIPPTANVKRDKREENNQNISTNSTKHKGNKTIKKTFNCGVCDKYFSTSGNLNVHKRTHTGVKPYKCDVCNKSFAFSCDLKDHKRTHTGDKPYKCDVCNKSFTKPSKLNVHKRTHTGVKPYKCDVCNKSFVISSDLKVHKRTHTGVKPYKCDVCNKSFGFSSDLKDHKRRHTGDKPYKCDVCNKSFTKPSKLNVHKRTHTGVKPYKCDVCNKSFVISSDLKVHKRTHTGEKPYKCDVCNKSFAFSSDFKVHERTHTGVKPYKCDVCNKGFTKSSKLNVHKRTHTGVKPYKCDVCNKCFTSLSNLKIHNRTHTHEKPYKCDVCNKSFTTSTHLKIHKRTHTGEKPYKCDVCNKCFTRLGNIIVHKRTHTREKPYKCDVCNKSFTNSTHLKTHKRTHTGVKPYKCDVCNKNFTQLWYLDVHKRAHAGVRPYKCDVCNKSFTNSGTFNVHKRVHTGVKPYTCDVCNKSFNSSDYFNIHKRIHAGVKPHTCDVCNKSFNRSWSLSIHKRTHTGVKPHKCDVCNKSFTELGNLKAHKRTHTREKPNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-