Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:4680685-4684977[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 3.5e-06 9.7e-05 23.2 0.7 1 23 19 41 19 41 0.97

2 28 0.017 0.46 11.6 3.5 1 23 47 69 47 69 0.94

3 28 0.33 9.2 7.5 5.2 1 23 75 97 75 97 0.97

4 28 0.0017 0.047 14.7 1.3 3 23 105 125 104 125 0.96

5 28 2.2e-05 0.00061 20.6 0.9 2 23 131 152 131 152 0.98

6 28 0.012 0.33 12.1 2.0 1 23 163 186 163 186 0.95

7 28 0.00018 0.0049 17.8 1.2 1 23 192 214 192 214 0.98

8 28 3e-06 8.3e-05 23.4 0.4 1 23 220 242 220 242 0.99

9 28 5.1e-06 0.00014 22.7 1.3 1 23 248 270 248 270 0.98

10 28 0.013 0.36 11.9 0.4 1 23 315 337 315 337 0.98

11 28 8.5e-06 0.00023 22.0 1.0 1 23 343 365 343 365 0.98

12 28 6.2e-05 0.0017 19.2 0.1 1 23 371 393 371 393 0.98

13 28 1.1 31 5.8 0.3 3 23 401 422 400 422 0.89

14 28 6.9e-05 0.0019 19.1 2.4 1 23 427 449 427 449 0.96

15 28 0.0016 0.044 14.8 0.7 1 23 457 480 457 480 0.93

16 28 0.012 0.34 12.0 2.1 1 23 486 508 486 508 0.97

17 28 1.4e-05 0.00039 21.3 3.4 1 23 514 536 514 536 0.98

18 28 5.4e-06 0.00015 22.6 3.8 1 23 542 564 542 564 0.98

19 28 0.095 2.6 9.2 0.7 1 23 627 649 627 649 0.94

20 28 2e-05 0.00054 20.8 3.0 1 23 655 677 655 677 0.97

21 28 0.011 0.31 12.1 0.8 1 23 683 705 683 705 0.96

22 28 0.67 18 6.6 4.7 2 23 712 734 709 734 0.91

23 28 2.8e-05 0.00078 20.3 1.0 1 23 739 761 739 761 0.98

24 28 2e-06 5.5e-05 24.0 3.8 1 23 771 793 771 793 0.99

25 28 4.3e-05 0.0012 19.8 0.1 1 20 799 818 799 821 0.93

26 28 1.8e-05 0.00048 21.0 1.7 2 23 828 849 827 849 0.97

27 28 6.8e-08 1.9e-06 28.6 1.5 1 23 855 877 855 877 0.99

28 28 0.0081 0.22 12.6 3.6 1 23 883 906 883 906 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	3.5e-06	9.7e-05	23.2	0.7	1	23	19	41	19	41	0.97
2	28	0.017	0.46	11.6	3.5	1	23	47	69	47	69	0.94
3	28	0.33	9.2	7.5	5.2	1	23	75	97	75	97	0.97
4	28	0.0017	0.047	14.7	1.3	3	23	105	125	104	125	0.96
5	28	2.2e-05	0.00061	20.6	0.9	2	23	131	152	131	152	0.98
6	28	0.012	0.33	12.1	2.0	1	23	163	186	163	186	0.95
7	28	0.00018	0.0049	17.8	1.2	1	23	192	214	192	214	0.98
8	28	3e-06	8.3e-05	23.4	0.4	1	23	220	242	220	242	0.99
9	28	5.1e-06	0.00014	22.7	1.3	1	23	248	270	248	270	0.98
10	28	0.013	0.36	11.9	0.4	1	23	315	337	315	337	0.98
11	28	8.5e-06	0.00023	22.0	1.0	1	23	343	365	343	365	0.98
12	28	6.2e-05	0.0017	19.2	0.1	1	23	371	393	371	393	0.98
13	28	1.1	31	5.8	0.3	3	23	401	422	400	422	0.89
14	28	6.9e-05	0.0019	19.1	2.4	1	23	427	449	427	449	0.96
15	28	0.0016	0.044	14.8	0.7	1	23	457	480	457	480	0.93
16	28	0.012	0.34	12.0	2.1	1	23	486	508	486	508	0.97
17	28	1.4e-05	0.00039	21.3	3.4	1	23	514	536	514	536	0.98
18	28	5.4e-06	0.00015	22.6	3.8	1	23	542	564	542	564	0.98
19	28	0.095	2.6	9.2	0.7	1	23	627	649	627	649	0.94
20	28	2e-05	0.00054	20.8	3.0	1	23	655	677	655	677	0.97
21	28	0.011	0.31	12.1	0.8	1	23	683	705	683	705	0.96
22	28	0.67	18	6.6	4.7	2	23	712	734	709	734	0.91
23	28	2.8e-05	0.00078	20.3	1.0	1	23	739	761	739	761	0.98
24	28	2e-06	5.5e-05	24.0	3.8	1	23	771	793	771	793	0.99
25	28	4.3e-05	0.0012	19.8	0.1	1	20	799	818	799	821	0.93
26	28	1.8e-05	0.00048	21.0	1.7	2	23	828	849	827	849	0.97
27	28	6.8e-08	1.9e-06	28.6	1.5	1	23	855	877	855	877	0.99
28	28	0.0081	0.22	12.6	3.6	1	23	883	906	883	906	0.97

Sequence Information

Coding Sequence: ATGGACTCGTTCCATATGGCAATACATCGCAGGATTCACACTAACGAAAGACCGTTTGCTTGTAGTGTTTGTAATAAGTCTTTTAGAAGTAACGGCATGCTAAAATCTCATATGTCGGTGCACTCGAACGAGAAACCGTTTTCGTGTGTTGTGTGCAATCGCCATTTTAAAACGAAACAGTATTTGCTGACTCACAGTTTGTTGCACGGCACCGAGAAAAAACATGTTTGTGATATTTGCGGCTATTCgtgttttcaaaagaaaattcttACAATGCATAGGAAAagacacaataaaaattatttggtgTTCTGTGAAAATTGCGGGaaaggtttttttaataacacaGACCTGAACGCTCACAAGTTCAAACATAGAGAAGATAAACCGAAATGTCAATTTTGTGGTAAATCGTACAGTTACGAGGCCGACTTAAAAAGACACGTCCAAACGCACGAcccaaatttcgaaaataaaaacccAAAATATAAATGCGAACATTGCGATAAGACTTTTCTGTCGAAGCGCGGATTTGATTTACATATTTTGGTTCAACATGTTGAAcgaaatttgtatgtttgcgACATTTGCGGTAAGAATTTGAGCACTAAGAAAGGCTTGCATCTTCATTTGCAAAGACATTCGGGAGAGAAGCCTTTCAAGTGTGTCGAATGTGGGAAAGTATTTGGGACCAAAGATAATCTCGTTTTGCATTCGCGAACACATACAGGCCTAAAACCGTATGAGTGTTTGGAGTGCGGGAAACGATTCACGCAACGTAGCACACTTGTGGTTCATAAACGATATCATAGTGGCGAACGGCCGTATTCTTGTCATTTGTGCGAAAAGGCAGAGGCGTCGTTAGCTTTGAAAGAAGAGTTCTTTGGCAGTTGTAATGTAGATTTTGACAATGACAATAATTACACGTATGCAGACGGACATTATGTATGTAATGTTTGCGGAAAAAAATGGGGCGTAAAGTCTAGTTGGAAACGCCATTTCATGACTCATATCGATCTGAAACCATTTGTGTGCGAAGTGTGTCAGAAGAGATTCAAAATGTCGTACGAGCTAAAGGCCCATCAGAAAATACACGGCGACCGCGTTAAATTCCAATGCGACGATTGCCCGAAAGTCTTTCAATCGAAAGACGGTTTGATTTTACATAAACTTGTACATTCCCAAAATTATAAAGTGTTCTGTACGTTTTGTGAAAGGGGGTTTTTGTACGCGTCACAATTACGGACCCACGTCGATGCCGAGCACAATAAAACCCAACACGCGTGCACCGTTTGCCAAAAGTCTTTTTCGACCGTGTCGAATTTAAACGTGCACTCGAAAAAACATAACCCCGATTATGAGAAGAGATTTAAGTGTGAAATTTGTGATAGAGCTTTCGTTTATAAAGCGGGGTTAATATATCATGAGGACAGTTGTcataaaaacgttaaaaattttacttgtgATGTTTGCGGCAAATCTATGACTTGTCGTGGTAGTTTGAAGAAACATATGCTGTTGCATTCGGGAGAAAAGCCTTTTAATTGCGAAACGTGCGGAAAGAGTTTCTCGAAACGTCATACTTTGGTCCTTCATCTCAGGACACATTCGGGCGTCAAACCTTACGAATGCACTGAGTGTCATAAAAAGTTCACGCAAAGAACTAGTCTAGTTGTACACATGAGATATCATAGCGGAGAAAGACCTTACGCTTGCCACTTGTGCCCCGAAACAAAATTATCGccaatgttaataaaatttaaacacgtTTCCGAACATGGAAACGATCAAGAAAACGTATGTACGGCTCGTAATAAATCAAAACGAGAGTTGGAAAGTAAGTCGGATGAAACGGGATACATAAAAACCGACGAGGGATTCAAATGTACCCTTTGCGATGAAATATTTATCAAGAAGTCGCGGTGGGCGGGCCATTTTCTGAAACATACGAACATTAGACTTCATTCTTGCGAAATATGTAGCAAATCGTTCAAACGTTCTTGGGAATTGAAATCTCATCGAAAAATACATGACAACAAACGAGAATTCATTTGTGAATATTGCGATCGAGGGTtcaatactaaaaatattttaactttgcaTCGCGACAGACATTTTAGACAGTACAAATGCAAATGTCCAGTTTGTAGTAAAGGATTTTTTGTTGACTGTCATTTACAGGAACATTATGAAGTCGAACACGAAGGAAAAAGATACGTTTGTGAAGTATGCAAGAAAGGATTTAAATCTCAGATTTATTTGAACACTCATCTTAATAAACACGATCCGAATTACATCgcgaaaaagatttttaaatgtCACATGTGCGATAAGAATTATTCGTCTCAAACGAATTTGAAAATTCATATCAACACCCATAAAGGACTTAAGAATTATATTTGTGATGTGTGTGGCAAAAGTTTCGTATCTGTGACGAATTTGAATACGCACATGCCGGTTCATACGGGCGTTAAACCAATCAGCTGTCAGATTTGTAGCAAGTCGTTTAAGAAAAAGCAAGAGTTGAAAATACACCTTCGCTCGCATACGGGCgaaaaaccgtatcaatgtaGCGATTGCGGCAAAAGATTCACTCAACGAAGTACGCTTGTGATTCATATGCGGTACCATAGTGGCGAAAGACCTTATCCTTGCCAGTTCTGCGACAAGTCGTTTGTTAGCAAAACATTCCAAAAGAATCATACAAAGAAATCGCATACGTTGCAAGCCGCGTGA
Protein Sequence: MDSFHMAIHRRIHTNERPFACSVCNKSFRSNGMLKSHMSVHSNEKPFSCVVCNRHFKTKQYLLTHSLLHGTEKKHVCDICGYSCFQKKILTMHRKRHNKNYLVFCENCGKGFFNNTDLNAHKFKHREDKPKCQFCGKSYSYEADLKRHVQTHDPNFENKNPKYKCEHCDKTFLSKRGFDLHILVQHVERNLYVCDICGKNLSTKKGLHLHLQRHSGEKPFKCVECGKVFGTKDNLVLHSRTHTGLKPYECLECGKRFTQRSTLVVHKRYHSGERPYSCHLCEKAEASLALKEEFFGSCNVDFDNDNNYTYADGHYVCNVCGKKWGVKSSWKRHFMTHIDLKPFVCEVCQKRFKMSYELKAHQKIHGDRVKFQCDDCPKVFQSKDGLILHKLVHSQNYKVFCTFCERGFLYASQLRTHVDAEHNKTQHACTVCQKSFSTVSNLNVHSKKHNPDYEKRFKCEICDRAFVYKAGLIYHEDSCHKNVKNFTCDVCGKSMTCRGSLKKHMLLHSGEKPFNCETCGKSFSKRHTLVLHLRTHSGVKPYECTECHKKFTQRTSLVVHMRYHSGERPYACHLCPETKLSPMLIKFKHVSEHGNDQENVCTARNKSKRELESKSDETGYIKTDEGFKCTLCDEIFIKKSRWAGHFLKHTNIRLHSCEICSKSFKRSWELKSHRKIHDNKREFICEYCDRGFNTKNILTLHRDRHFRQYKCKCPVCSKGFFVDCHLQEHYEVEHEGKRYVCEVCKKGFKSQIYLNTHLNKHDPNYIAKKIFKCHMCDKNYSSQTNLKIHINTHKGLKNYICDVCGKSFVSVTNLNTHMPVHTGVKPISCQICSKSFKKKQELKIHLRSHTGEKPYQCSDCGKRFTQRSTLVIHMRYHSGERPYPCQFCDKSFVSKTFQKNHTKKSHTLQAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -