Vnig003105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000005.1:12250649-12256869[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 4.6e-06 0.00013 22.8 1.8 1 23 378 400 378 400 0.96
2 22 2.1e-05 0.00059 20.7 2.6 1 23 406 428 406 428 0.99
3 22 5.2e-06 0.00014 22.6 2.6 1 23 434 456 434 456 0.99
4 22 0.00034 0.0093 16.9 3.2 1 23 462 484 462 484 0.97
5 22 0.0001 0.0028 18.6 4.0 1 23 490 512 490 512 0.98
6 22 7.3e-06 0.0002 22.2 4.5 1 23 518 540 518 540 0.98
7 22 4e-07 1.1e-05 26.1 1.7 1 23 546 568 546 568 0.98
8 22 0.0001 0.0029 18.5 1.3 1 23 574 596 574 596 0.99
9 22 9e-05 0.0025 18.7 4.4 2 23 603 624 603 624 0.97
10 22 5.7e-05 0.0016 19.4 2.7 1 23 802 824 802 824 0.98
11 22 5.8e-06 0.00016 22.5 1.1 1 23 830 852 830 852 0.98
12 22 2.2e-05 0.0006 20.7 5.4 1 23 858 880 858 880 0.98
13 22 1.3e-05 0.00036 21.4 2.9 1 23 886 908 886 908 0.97
14 22 7.8e-06 0.00022 22.1 1.5 1 23 914 936 914 936 0.99
15 22 6.4e-06 0.00018 22.3 1.4 1 23 942 964 942 964 0.98
16 22 2.7e-05 0.00074 20.4 3.0 1 23 970 992 970 992 0.99
17 22 8.8e-06 0.00024 21.9 2.5 1 23 998 1020 998 1020 0.97
18 22 3.9e-05 0.0011 19.9 0.3 1 23 1026 1048 1026 1048 0.99
19 22 4 1.1e+02 4.1 4.9 1 21 1054 1074 1054 1076 0.82
20 22 7.7e-05 0.0021 18.9 1.2 1 23 1082 1104 1082 1104 0.99
21 22 1.1e-05 0.00031 21.6 4.5 1 23 1110 1132 1110 1132 0.98
22 22 8.2e-07 2.3e-05 25.2 3.0 1 23 1138 1160 1138 1160 0.99

Sequence Information

Coding Sequence
ATGAGTGGCATCAAACATGAGGAAAGAGATATCAGCAACTCAGATACTTTCATTTTCTGTGAAGATACTAAAATTGGTCTTACAGATATTACGATGAGACTAACAGACCCTGCAACGGATAAAATGGATTTGAAACCCCAAATATTGAATGGTGCTAATACTAACGACAAGTTAACTTTAAATGActcaaatgttattttgaatataaaaccTGACCCATTTGAAATTGAGAACCGAGTGAAACAAGAACTTGTTTCTGATCAAGGGACGAGTCTTACAGATGCCGCCATTAAATATGAGAATATAGAGCTGAGCTGTTCGAACACTATGGTCTTAATTGAAGAAACAAAGGTCCGGAACATGATCAATTCTGACGAACAATCTAATTTCAATGCGTCAGACGCAAAGACGACTGTAGAATGTGATCCTTTAGCTACAGAACCGTACGTGAAACAGGAAAATAAAACATCATTTTCGACTTTTAGTAATGATAATAGTGACCACAAAAACGTCGAGGATCGGTCTGTGTCAgGAAATGGTGAATCGTGTTTAATTTTAATGCCCAGTATTGAAAAAGACATGCCTGTAAATCGTGTCAGTTGTTCCAGTCAAGAAATAGCAAGTGATTTTTCGAACGTCGTCGTCAAATGTGAGGAAACTTTGAGTCACTCTGACACTTCGAATACTGAAATAGATGTCAAACCTCAGATTTTCAATACGGTTAATACTAAAGAACAGTCaggtttgtttataaatataaaacctGACCTCTTTGAAATTGAGAGCCGCGTGAAGCAAGAATTTGTTTCTAATCAAGAAACAGGTTGTGTGGATGCCGCCATTAAAAGTGAGAAAACAGAAATGAGCTTCTCAGACACTatgtttttttctgaagaaGTGAAGAATTCTAATAAACAATCTGATGTCAGTGCGTCAGACGCGAATACGACTGTAAAATCTGACCCTTTAGCTACAGAAACCTACATAAAACAAGATAATGAAGTATATGTTAGCTCATCGTTTTCGACACTTAGTGGTAGTGACAGTGACAATGACCACAACAGTAAAGACGACTCCATGGTGTCAACTAACGAAAAACAATCTCAACTTACCTACAAAAACAAGACACCATATCtatgtgatgtttgtaataatacTTTCACTCGGCGAAgtagtttaaaaaatcatatacgaacacataccggtgagaaaccgtatcaatgcgATGTGTGCAAAAAGAATTTTTCCCGTTTAagttatttaaattatcataaacgtatacataccggtgagaaaccatatcaatgtgagaTTTGTAACAAGACTTTCAACCAATCAGCTGGTCTGACACACCACAAAAATACACATACCGGCGAGAAACCCCATCAATGTGATGAATGTGAAAAATCTTTCATCAAGCGCGAGTCTTTAAAGAGTCATAAACTACGACACTCTGGGGAGAGACCATATCATTGTGATATATGTGATAAATCTTTCAGTCGAACAATTTATTTAAgtaaacacaaaaatacgcatTCCGGTGAGAAACCTCACCAATGTGATATGTGTGATAAATGTTTTACCCGACAAGATTCTTTAATAGTTCACAGGCGCTTACATTCTGTGGAGAAACCATATCCGTGTGATATTTGCAGAAAAAGTTTTTCTCGTTCAAGTTTATTAAATAGACACAAACGTATGCATACCggcgagaaaccgtatcagtgtgatgtATGTAGGAAGAGCTTTTCTAATTCAAGTATATTAAATAGTCACAAACGTATACATACAGGCGAGAAACCAAATCGATGTGATGTATGCAACAAATGTTTCACTCAGAGTTATTCTTTAAAGATTCACAAGCGTCTACattctgAAGAAAATAGTCAGGACGCAGGAAATGGTTTTTCGAGTGTTGTCATCAAATGtgagaaaaaagaaatgaacGACTGGGACACATCTTCTAACATAGGCGTAGAAACAAAGCTAGGTTTGCCAGACAATGAAGTTGATTCCCAACCTCAGATATTGAATATTGACAAAACTAACAACCAGTCAAGTTTAATTGTGAAAATAAAACCCGACCCTTGGGAAATTGAGACTCGTGTGAAACAAGAATTCATTTCTAATCAAGAAACAGGTTCGTTAAATGTCGCCATAAAAAGTGAGAAAACAGAAATGAGCTGCTCAGACAATGCGCTTTTCTTTGAAGAAGCAAAGATCATGAACAATTGTAACCAACAATCTGATTTCGATTCTACAAATCCAAACACGAGTATAAAGTGTGATCCTTTAGCTACAGAGATTTACATAAAGCAAGAAAAGGAAATATATGTTGACCCATCGTTTTCGACATTTAATGATGGTAACAGTGACATCGATCGCAACAGTGGTGAGAAATTACATCAGTGTGATATTTGCGAAAAGAGTTTTGTCAgttcaaaatatttaagtaaTCACAAACGTATACATACCGGTGTGAAACCatataaatgtgatttttgtGAGAAAACTTTCATACGACCAAGCGACttaaatacacacaaaaatatacatactgGTACGAAACCACATCAATGTGATATATGCAATAAATGTTTTACCCAACGCATTAATTTAAAGATTCACAAACGGATACATTCTGGAGAGAAAGCATATCATTGTGATGTTTGTGATAAGTTTTTCAATCAAGCGAGTAATTTACGTAAACACAGACTTCTACATACCGGTGCGAAatcatatcagtgtgacgtttgcaacaAGAGTTTCAGTCAGTTAAGAACTTTAGAAGAACACAAACGTTcacatactggcgagaagccatatcagtgtgatgtGTGTAATAAAACTTTCAGCCGATCAGGTTATCTAAGTTCACACAAACGCGCACATACCGGTGAGagaccgtatcagtgtgacgtttgtaataagtgttttacACAACGCATCACTTTAATGATTCACAAACGCATACATTCTGGTGAGAAAGCCTATAAATGTGATGTTTGCGATAAGGCTTTTACTCAAGCATGCAATTTACGTAGACACAAACTTCTGCATACCGGTacgaaaccatatcaatgtgacgtttgcaatGAGGCCTTCAACCAGTTAAGCACTTTGGAAGGTCATAAACGCACACATACCGGCGAGAAACCGTATCATTGTGACGtatgcaataaatattttactcaGCGCGCTACTGTGAAGTTTCATAAACACCTACATTCCGGCGAGAGACCTTATCAATGTGATATATGCAAAAAGAATTTTTCTCGTTCaagtatattaaatattcacAAACGTATACATAGCGGTGAGAAACCTTATAAATGCGATGtatgtaataaatgttttactCAACGTGATACTTTAAGGGTTCACAAGCGTCTACATTCTgatgagaaaccgtatcaatgtgatgtttgtGATAAGACTTTTGTACATTCAAGTAACTTACGCCAACACAAACTTACACATACTAATAAGAAGTCAATTCGCTGA
Protein Sequence
MSGIKHEERDISNSDTFIFCEDTKIGLTDITMRLTDPATDKMDLKPQILNGANTNDKLTLNDSNVILNIKPDPFEIENRVKQELVSDQGTSLTDAAIKYENIELSCSNTMVLIEETKVRNMINSDEQSNFNASDAKTTVECDPLATEPYVKQENKTSFSTFSNDNSDHKNVEDRSVSGNGESCLILMPSIEKDMPVNRVSCSSQEIASDFSNVVVKCEETLSHSDTSNTEIDVKPQIFNTVNTKEQSGLFINIKPDLFEIESRVKQEFVSNQETGCVDAAIKSEKTEMSFSDTMFFSEEVKNSNKQSDVSASDANTTVKSDPLATETYIKQDNEVYVSSSFSTLSGSDSDNDHNSKDDSMVSTNEKQSQLTYKNKTPYLCDVCNNTFTRRSSLKNHIRTHTGEKPYQCDVCKKNFSRLSYLNYHKRIHTGEKPYQCEICNKTFNQSAGLTHHKNTHTGEKPHQCDECEKSFIKRESLKSHKLRHSGERPYHCDICDKSFSRTIYLSKHKNTHSGEKPHQCDMCDKCFTRQDSLIVHRRLHSVEKPYPCDICRKSFSRSSLLNRHKRMHTGEKPYQCDVCRKSFSNSSILNSHKRIHTGEKPNRCDVCNKCFTQSYSLKIHKRLHSEENSQDAGNGFSSVVIKCEKKEMNDWDTSSNIGVETKLGLPDNEVDSQPQILNIDKTNNQSSLIVKIKPDPWEIETRVKQEFISNQETGSLNVAIKSEKTEMSCSDNALFFEEAKIMNNCNQQSDFDSTNPNTSIKCDPLATEIYIKQEKEIYVDPSFSTFNDGNSDIDRNSGEKLHQCDICEKSFVSSKYLSNHKRIHTGVKPYKCDFCEKTFIRPSDLNTHKNIHTGTKPHQCDICNKCFTQRINLKIHKRIHSGEKAYHCDVCDKFFNQASNLRKHRLLHTGAKSYQCDVCNKSFSQLRTLEEHKRSHTGEKPYQCDVCNKTFSRSGYLSSHKRAHTGERPYQCDVCNKCFTQRITLMIHKRIHSGEKAYKCDVCDKAFTQACNLRRHKLLHTGTKPYQCDVCNEAFNQLSTLEGHKRTHTGEKPYHCDVCNKYFTQRATVKFHKHLHSGERPYQCDICKKNFSRSSILNIHKRIHSGEKPYKCDVCNKCFTQRDTLRVHKRLHSDEKPYQCDVCDKTFVHSSNLRQHKLTHTNKKSIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-