Vnig012349.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:1363256-1371797[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.01 0.29 12.2 11.1 1 23 141 163 141 163 0.99
2 26 0.00015 0.0041 18.0 4.0 2 23 170 191 169 191 0.97
3 26 1.9e-06 5.3e-05 24.0 0.8 1 23 197 219 197 219 0.99
4 26 0.00075 0.021 15.8 6.1 1 23 347 369 347 369 0.98
5 26 5e-05 0.0014 19.5 4.0 2 23 376 397 375 397 0.96
6 26 5.1e-06 0.00014 22.6 3.6 1 23 403 425 403 425 0.99
7 26 2.9e-05 0.00079 20.3 2.5 1 23 431 453 431 453 0.99
8 26 0.00012 0.0032 18.4 2.1 1 23 459 481 459 481 0.99
9 26 4.5e-05 0.0012 19.7 4.1 1 23 487 509 487 509 0.98
10 26 0.00087 0.024 15.6 5.6 1 23 515 537 515 537 0.97
11 26 9e-06 0.00025 21.9 2.2 1 23 543 565 543 565 0.97
12 26 1.9 52 5.1 8.3 1 23 682 704 682 704 0.98
13 26 0.0002 0.0054 17.7 1.2 1 23 710 732 710 732 0.99
14 26 0.007 0.19 12.8 3.1 1 23 738 760 738 760 0.99
15 26 0.002 0.056 14.5 6.0 1 23 766 788 766 788 0.97
16 26 5.7e-05 0.0016 19.4 3.2 1 23 794 816 794 816 0.99
17 26 4.7e-05 0.0013 19.6 2.0 1 23 822 844 822 844 0.98
18 26 0.00034 0.0092 16.9 1.5 1 23 850 872 850 872 0.98
19 26 0.0031 0.084 13.9 2.1 1 23 878 900 878 900 0.98
20 26 6.9e-06 0.00019 22.2 1.5 1 23 906 928 906 928 0.99
21 26 3.1e-06 8.6e-05 23.3 2.4 1 23 934 956 934 956 0.99
22 26 2.1e-07 5.9e-06 27.0 2.8 1 23 962 984 962 984 0.99
23 26 1.3e-06 3.5e-05 24.6 3.7 1 23 990 1012 990 1012 0.98
24 26 0.0017 0.047 14.7 4.5 1 23 1018 1040 1018 1040 0.98
25 26 1.7e-05 0.00047 21.0 1.3 1 23 1046 1068 1046 1068 0.99
26 26 0.0002 0.0055 17.7 1.7 1 23 1074 1096 1074 1096 0.98

Sequence Information

Coding Sequence
atgaataatgaaatattcataaaatctgaaATCAAAGAAGAACCGATGGATGAAAATCCACATTTTCCAACAGACTGCGCTAATGAAACATTAGAAGCTCTATCCAAATGTGAGAATGGTGATTTCGGCTGCGAAGATTCAAAGATCGGAATTGGGGATActaaaataggtgtagatatcAACTGGAAAGAGCCAGGATCTGCCACTTTTAATTCAACAAAGCAAACTAACGaagtgatatttttaaaatccgaaatcaagAATGAACCGATGGATGATAATTCATTCGTATTTTTACCGGAATATGTCGATAACATAGCGAACGCGTCGTCAAACGACGACGacagtaaaattaaacaaaaaacagataTTGGTCAGACGTCAGGGTTACAGAATCGTGTGCATACTGATGAGAAACTGTTTAAGTGtggcatttgtaaaaagtgctttCACCACATACATGATCTAAAGAAACACAGACGCGTACACACTGGTGATAAGCATTGCCAGTGTAACGTTTGTGAAAAGAAGTTCAAGTACACAAGTGATTTGTTAAGGCACACTCGTATTCATAGTAATGACAAAccttatcagtgtgacgtttgtgataAGAGCTTTACTCAACAGGCTTTCTTAACAATTCACAagcgtatacatactgaCGAACCGATGGATGATACTTCACTGTTTCCAACAGACTGTGGTGATGAAACAGTAGAATCTCTATCGAAATGTGAGAATAGTGATGAAGGTTCAAAGATTGGAATTAAAGACACTAAAATAGGTGTAGACATCAACTGGAAAGGGGCAGGATCTGGCACTTTTAATTCAACAAACCAAATTAACGaagtaatgtttttaaaatccgaaatcaagGATGAACCGACGTACGATaattcattcatatttttaccaGAACGTATCGATGACTCTTTAAATGCGACGTGTAACGCCGACGGTAGAGAAATAAGTTGCGAAGACATAAAGATTGGTCACACATCGGGAATACAGGATCTCGTGCATAccgataaaaaaacatttaaatgtgGCGTTTGTAAAAAGAGTTTTTATCATATACATGATTTAAAGAAACACAGACGCGCACATTCTGGCAATAAACGATGTCAGTGTAACTTTTGTGACAAGAGTTTCAGGTATAGAAGTGATTTGTTGAGGCACACACTTGTGCATAGTAATGAGAAAcaatatcagtgtgacatttgtaataagaattTTACTCATAAAGGTTCACTAACAACCCACAagcgtatacatactggtgacaAACCCTATCAATGCGACGTTTGTAAAAAGAGCTTCAGATATACTATAAGTTTGACAAGGCACAAACGTATACACACTGAGAAGAAACAATATCAGTGTGATATTTGCAATAAGATCTTTAATCAAATGAATCGTTTAACAAATCACAAGCGGACACATACTGGGGAGAAACCATTTAtgtgtgatatttgtaaaaaatgcttcGGTACATCAGATTTCTTAAAAAGACACTACCGCGTTCATACTGGCGAGagaccatatcagtgtgatgtttgtaataagagatTTAATCAAGCGTGTCATCTGAAATCACACAAACTCTTACATACCGGTGAAAAACCTTATCGGTGTGACATTTGTGACAAGTGTTTTATTCAATCAAGTGCTCTGAAGTCTCACAAGCTCTTGCATACAGACGAACCGATGGATGATAATTCACAGTTTTCCACAGACTGTGCTGGTGACACAGTAGATCCTCTATCCAAATGTGATGGTGAGGTCTCAAAGTTTGGAATTGGAACTAAAATTGTTGATCAAGAGCCAGGATCTGCCACATTTAATTCAACAAACCAAATTAACGAAGGAATGTTTTTAATATCCGAAATCAAGAAAGAACCCATAGatgattcatttatatttttaccagAATATGTCGAAGACTCTAGCGCTTTGACTAACGCCGACAGCAAAGTAGACACACAAACAGACATTGGTCAAACGTCGGGAATACAGAATTGCGTGCGTACCGATGAGAAACCTTTTaagtgtgatgtttgtaaaaagTACTTTCATCTTCTACGTGATTTTAAGAAACACAAGTGCGTCCATACTGATAATAAACAATATCAGTGTAACGTCTGTGAAAAGAGTTTCAGGGATACAAATAGATTGATAATGCACAAACGTATACATACAGATGAGAGGCCATATCAGTGCGACGTTTGTATGAAGTGCTTTAAACAAGTAGGTCATTTAATAGGTCATAagcgtatacatactggtgagaaaccacatCAATGCGATATTTGTAAGAAATGTTTTGGTTTACCATCAGAATTAAAGAGACACAAGCATATACATACGGGTGTAAAACCGTATCAGTGCGAAGTTTGTAAACGTTGTTTTGGTAGTTCAGAACTTTTAAGAAAACACAAACGCATACATagtggtgagaaaccatatcactGTGGCGTCTGCTCTAAGAGCTTCAACCAAGTGGGCAATTTAAATCGTCACAAGcgcatacatactggtgagaaaacATATCAGTGTGAAGTCTGTAGAAAATTCTTTGATACAACAGTATTGTTAAAGAGACACAATCGtgtgcatactggtgagaaaccatatcagtgtgacgtttgtggaAAGCACTTAAGTACAAAAACAGTTTTCGCTAGACACTATCAACTCCACACTGGTGATAAActatatcaatgtgacgtttgtgaaaagAGTTTTTGTGATAACACAAGTTTGATAGCTCACAAACGCATACATAGTGGTgtgaaaccgtatcaatgtgacgtttgtactAAGTGTTTTGTTACAAAGGGTCAATTAAAAAGTCATGTacgtatacatactggtgagaaaccatataagtgtgacgtctgtaaaaaatgttttagtagACCAGAACTTTTAAGAAAACACATTCGCGTGCATACCGGTGAGcgaccatatcagtgtgacgtttgtaaaaagtgctttTCTACATCATCAAATTTAAAGGTTCACAATCGCGTGCATACCGGCGAGAAACAACATCAGTGTGACAGTTGTGAAAAAAGTTTCGCTGATAAAAGATGTTTGATAAATCACAAACGTATTCATACTGGCGAGAAGCCCTAtgagtgtgacgtttgcaaagAGTTGTTTATTTCACCATCACATTTAAAGAGACACTATCGCATCCATACTTCTGAGAAAGTATATCAGTGTGACGCTtgtaaagaatgttttattacATTAGCAAATTTAAAGCGACACAATCGCGTCCATGGCGATTCGGAAGCTTATTAG
Protein Sequence
MNNEIFIKSEIKEEPMDENPHFPTDCANETLEALSKCENGDFGCEDSKIGIGDTKIGVDINWKEPGSATFNSTKQTNEVIFLKSEIKNEPMDDNSFVFLPEYVDNIANASSNDDDSKIKQKTDIGQTSGLQNRVHTDEKLFKCGICKKCFHHIHDLKKHRRVHTGDKHCQCNVCEKKFKYTSDLLRHTRIHSNDKPYQCDVCDKSFTQQAFLTIHKRIHTDEPMDDTSLFPTDCGDETVESLSKCENSDEGSKIGIKDTKIGVDINWKGAGSGTFNSTNQINEVMFLKSEIKDEPTYDNSFIFLPERIDDSLNATCNADGREISCEDIKIGHTSGIQDLVHTDKKTFKCGVCKKSFYHIHDLKKHRRAHSGNKRCQCNFCDKSFRYRSDLLRHTLVHSNEKQYQCDICNKNFTHKGSLTTHKRIHTGDKPYQCDVCKKSFRYTISLTRHKRIHTEKKQYQCDICNKIFNQMNRLTNHKRTHTGEKPFMCDICKKCFGTSDFLKRHYRVHTGERPYQCDVCNKRFNQACHLKSHKLLHTGEKPYRCDICDKCFIQSSALKSHKLLHTDEPMDDNSQFSTDCAGDTVDPLSKCDGEVSKFGIGTKIVDQEPGSATFNSTNQINEGMFLISEIKKEPIDDSFIFLPEYVEDSSALTNADSKVDTQTDIGQTSGIQNCVRTDEKPFKCDVCKKYFHLLRDFKKHKCVHTDNKQYQCNVCEKSFRDTNRLIMHKRIHTDERPYQCDVCMKCFKQVGHLIGHKRIHTGEKPHQCDICKKCFGLPSELKRHKHIHTGVKPYQCEVCKRCFGSSELLRKHKRIHSGEKPYHCGVCSKSFNQVGNLNRHKRIHTGEKTYQCEVCRKFFDTTVLLKRHNRVHTGEKPYQCDVCGKHLSTKTVFARHYQLHTGDKLYQCDVCEKSFCDNTSLIAHKRIHSGVKPYQCDVCTKCFVTKGQLKSHVRIHTGEKPYKCDVCKKCFSRPELLRKHIRVHTGERPYQCDVCKKCFSTSSNLKVHNRVHTGEKQHQCDSCEKSFADKRCLINHKRIHTGEKPYECDVCKELFISPSHLKRHYRIHTSEKVYQCDACKECFITLANLKRHNRVHGDSEAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-