Vnig006898.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000014.1:5981276-5987306[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00056 0.015 16.2 2.2 1 23 175 197 175 197 0.99
2 24 0.0031 0.086 13.9 3.6 1 23 221 243 221 243 0.97
3 24 1.8e-05 0.00049 20.9 2.5 1 23 249 271 249 271 0.97
4 24 0.00056 0.015 16.2 6.9 1 23 277 299 277 299 0.99
5 24 9.7e-07 2.7e-05 24.9 1.7 1 23 305 327 305 327 0.98
6 24 7.1e-06 0.0002 22.2 5.7 1 23 333 355 333 355 0.99
7 24 8.2e-06 0.00023 22.0 4.4 1 23 361 383 361 383 0.99
8 24 7e-05 0.0019 19.1 3.6 1 23 389 411 389 411 0.98
9 24 5.3e-05 0.0015 19.5 3.4 1 23 417 439 417 439 0.99
10 24 0.00051 0.014 16.4 1.3 1 23 445 467 445 467 0.97
11 24 0.0034 0.095 13.8 0.3 1 23 473 497 473 497 0.92
12 24 1.3e-07 3.5e-06 27.7 3.1 1 23 694 716 694 716 0.99
13 24 3.6e-05 0.00099 20.0 3.8 1 23 722 744 722 744 0.98
14 24 0.00046 0.013 16.5 3.0 1 23 750 772 750 772 0.98
15 24 9.6e-06 0.00027 21.8 2.5 1 23 778 800 778 800 0.99
16 24 1.3e-06 3.6e-05 24.5 2.0 1 23 806 828 806 828 0.99
17 24 4.6e-06 0.00013 22.8 0.5 1 23 834 856 834 856 0.98
18 24 1.6e-05 0.00043 21.1 6.4 1 23 862 884 862 884 0.98
19 24 9.7e-06 0.00027 21.8 0.8 1 23 890 912 890 912 0.99
20 24 1.1e-06 3e-05 24.7 2.0 1 23 918 940 918 940 0.98
21 24 0.00027 0.0073 17.3 0.8 1 23 946 968 946 968 0.96
22 24 2.6e-06 7.2e-05 23.6 3.6 1 23 974 996 974 996 0.99
23 24 0.00048 0.013 16.4 8.2 1 23 1002 1024 1002 1024 0.98
24 24 0.0086 0.24 12.5 0.6 1 23 1030 1052 1030 1052 0.98

Sequence Information

Coding Sequence
ATGAATACGAAAATAACATCCCGCGAAGAATTAAATAGTACATGTAGAGTATGTCTCAATGGTGATTTGAATTTAATTGATATATTTACGTTTTCTACTCAATTTGGGTGTCAAATATTCACTGCGATCACAAAATGTGCTCCCGTACAGATATCAAAAAATGACGGGATGCCTCATTTCATCTGTAAAATATGTTCAAGTAATTTGAAAGTAGCTTACGAATTTCAAGCACAAGCTGTTCGCTCTGAAAGCgctttacttttatatttaaaaaagctTCACGGTACACAAAGCGATGTAAAAATTGAACATTGCAGTGAGCAGAGTTTGGATGAGTTTTGTTCAGACAACACGTCTTCGAACGGTGTTGTTGAAACTCCCGACGATATTCAACCTGACATTAAAATAGAAGTAGCAGAAGACAATACAACAAATGACGACACACAAATACCggaagtaaattataatttagtaaATAACAAAGACGAAACTGACAACGAAAACAATCAGACTGATAAACAGTTTAAGTGCAATAAATGTCCAGACCAGTTCGAGCAAAGTGATCAACTGAAGAGTCATAAACGGACACACAAAAAGTTAAAAGACAATAAGAAAAGGATAGTAAAAGTGGACAAGAAAAAATCTACTGCACCGCCCGTTTACGATTGTGAAAGTTGCGATAAAAAGTTTACGCATCTAGCCGCTTTCAAGTCGCATAAAAAGTCACATTCAAACGATAAATCTTATCACTGCGATATTTGTGACAAGAGTTTTGCACGATCAAGTAGTTTGAGTTCGCATAAAAAAGAACACACCGGAATTAAACCTTATAAATGCGATATTTGCGATAAACATTTCACGAGAATTCATAAGCTGAAATATCACAAACGAATACATTTCGGTGATAAGTTGTTTCAGTGCGATATTTGCAACAAGAGCTTTACATATCAGACAAATTTAATATCGCACAAACGTATACATTCCGGTGAGAAAccttatcaatgtgacgtttgcggTAAGTGTTTTACGCAACTTATTCATTTGAAGTCGCACAGAAAAACTCATTTCGGTGAGAAGTCCTATCAATGCGACGTTTGTGAAAAAAGTTTCATACACGCGAGTCATTTGAAAATTCATAAACGGAAGCATTCCGGAGAGAAACCTTATCGATGTGAAGCTTGCGATAAATGTTTCGCACATCTGAGTAATCTGAATGTTCATAAATTGACGCATTCCAATTGGAAACCTTACCAGTGTGACGTATGTAATAAGTATTTTAGACAGTTGTGTAATTTGAATGCTCACAAACGAATACATTCGGGAGAGAAACCGTTCGAATGCGATATTTGTGATAAGCGTTTTGCGTATTTCAACAGTTTGAAATTGCATAAAATCAAACATAGCGGCGTCAAAGCCTATCAATGCGATCTTTGCGATAAGAGATTTTCAGTTATGGGACCGCTAGTTCAGCATAGACGTATAACAAAACATGATGGAATGccaaattttatatgtaaattatGCCACAACCAATTGAAAGTAGCTCATGAATTCCAAAAGAAAGCTGTACGTTCGGACAGTACCTTACatctgtatttgaaaaaaatacgtgaTCTAGAAAAGCCAAACGAAATCTGCGATACTATGAAACCAGAAAACATCGATTCGTCTTCAATAACTGATTTCATCAATAAAGATTACGAAAATCCAATGGATATTAAATGTGAAATCAAAATAGAAGAACCGGATGTCATTTCAGCAAACGATCAAAaagaaattcataaaaaatcagACGATGAAGAAATCGAAATTgtaaatcgttatttaaaaaagttgcaGGACactaacaaaataaacaatgatCCACTAGAAAATGGAATTAATGAAAAATCTTCCGCTCAAAACGACGACAGAAGTGAAGATGATGCCGATTTgtcgaataataaaatttcaagtgAGGATAATTCGGAAGAAGAAAAGGAAATGGATGATTCGACCCAGTTACAAGAATGTCGCAAGACTTTTGTAAAATTAAGAAACATAATGACACGTAAACGAGTGCGTTCTAATGCAAAGAATTACAAATgcaacatttgtaaaaaatcttTCACGACTTTGAGTAATTTAAAATCGCACAGACGCGTCCATTCCGGTGAGAAACCGTTTCATTGCGAATTTTGTGATAAGCGTTTTACACAATTGAGTCAACTGAATGTTCATAAACGTATACATTCCGGAGACAAACCTTATCGCTGTGACGTTTGTGATATGTGTTTCACGTTCAGTGGTCAgttaaaattacacaaaataaaacacaccAATGAAAATCCGTTTAAATGtacaatttgtaataaatattttacgtcGTTAGGAAATCTAAAAACTCATGAGAAAACACATTCCGGTATTAAACCCTaccaatgtgacgtttgtgagAAACGATTTACGCAAGCGAGTCATTTAAATGTACATAAACGTATACACACGGGAGAGAAACCCTATAGCTGCAATGTTTGCGATAAATCATTTTCGGTTTTAAGTAAATTAGAAGCGCACAAAAGAATACATTTGGGGGAGCGACCTTATCAGTGTGACGTGTGCAATAAGTGTTTTACGCAACCGACACATTTAAAAACTCATAAACGTCTGCATTCGGGCGAGAAACCTTATCAATGTGAAATTTGCAGCGAAAGTTTCACGCATTCTGTCGGCTTAAAGATACACATGATTAAACATACTGGTGTTAAGCCTtatcagtgtgatatttgtgGAAAATGTTTCACGCAATTAACAAATTTGAATGCCCATAAAGTAACGCACTCTGGTGGGAAAAGTTTTCAGTGCGATGTGTGTGAAAAGATTTTTTCACAgttgagatatttaaaaaaccatAAAGTTATCCATTCTGCTGCGAAACTATATCAATGTGATGTTTGCGATAAAAGTTTTACGCGTCTCCATTCGTTGAATTTACATAAACGAACACATTCTGGGGAGAAACCGTTTGAGTGTGAAGTTTGTAAGAAGTGCTTTACTGATATGTGTAATTTGAAGAAACATAAACGAAAACATACTGGGgaaaaaccgtatcagtgtgatgtttgtGAAAGACGACTTGGCTCGAAACAGAgcttaataaaacataaacagtTACATACTTAG
Protein Sequence
MNTKITSREELNSTCRVCLNGDLNLIDIFTFSTQFGCQIFTAITKCAPVQISKNDGMPHFICKICSSNLKVAYEFQAQAVRSESALLLYLKKLHGTQSDVKIEHCSEQSLDEFCSDNTSSNGVVETPDDIQPDIKIEVAEDNTTNDDTQIPEVNYNLVNNKDETDNENNQTDKQFKCNKCPDQFEQSDQLKSHKRTHKKLKDNKKRIVKVDKKKSTAPPVYDCESCDKKFTHLAAFKSHKKSHSNDKSYHCDICDKSFARSSSLSSHKKEHTGIKPYKCDICDKHFTRIHKLKYHKRIHFGDKLFQCDICNKSFTYQTNLISHKRIHSGEKPYQCDVCGKCFTQLIHLKSHRKTHFGEKSYQCDVCEKSFIHASHLKIHKRKHSGEKPYRCEACDKCFAHLSNLNVHKLTHSNWKPYQCDVCNKYFRQLCNLNAHKRIHSGEKPFECDICDKRFAYFNSLKLHKIKHSGVKAYQCDLCDKRFSVMGPLVQHRRITKHDGMPNFICKLCHNQLKVAHEFQKKAVRSDSTLHLYLKKIRDLEKPNEICDTMKPENIDSSSITDFINKDYENPMDIKCEIKIEEPDVISANDQKEIHKKSDDEEIEIVNRYLKKLQDTNKINNDPLENGINEKSSAQNDDRSEDDADLSNNKISSEDNSEEEKEMDDSTQLQECRKTFVKLRNIMTRKRVRSNAKNYKCNICKKSFTTLSNLKSHRRVHSGEKPFHCEFCDKRFTQLSQLNVHKRIHSGDKPYRCDVCDMCFTFSGQLKLHKIKHTNENPFKCTICNKYFTSLGNLKTHEKTHSGIKPYQCDVCEKRFTQASHLNVHKRIHTGEKPYSCNVCDKSFSVLSKLEAHKRIHLGERPYQCDVCNKCFTQPTHLKTHKRLHSGEKPYQCEICSESFTHSVGLKIHMIKHTGVKPYQCDICGKCFTQLTNLNAHKVTHSGGKSFQCDVCEKIFSQLRYLKNHKVIHSAAKLYQCDVCDKSFTRLHSLNLHKRTHSGEKPFECEVCKKCFTDMCNLKKHKRKHTGEKPYQCDVCERRLGSKQSLIKHKQLHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-