Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:8562396-8567333[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0044 0.12 13.4 1.7 1 23 193 215 193 215 0.98

2 27 7.2 2e+02 3.3 4.1 2 19 222 239 221 242 0.88

3 27 6.7e-05 0.0018 19.2 5.8 1 23 249 271 249 271 0.98

4 27 2.2e-05 0.00061 20.6 0.9 1 23 277 299 277 299 0.97

5 27 7.4e-05 0.002 19.0 2.7 1 23 305 327 305 327 0.98

6 27 0.00017 0.0045 17.9 2.4 1 23 333 355 333 355 0.99

7 27 0.00015 0.0042 18.0 0.9 1 23 361 383 361 383 0.97

8 27 0.0015 0.042 14.9 3.0 1 23 389 411 389 411 0.98

9 27 2e-06 5.4e-05 24.0 0.8 1 20 417 436 417 438 0.96

10 27 1.6e-06 4.3e-05 24.3 0.3 2 23 614 635 613 635 0.97

11 27 0.00043 0.012 16.6 2.1 1 23 641 663 641 663 0.99

12 27 1.6e-06 4.5e-05 24.2 0.6 1 23 669 691 669 691 0.99

13 27 0.0011 0.029 15.4 1.1 1 23 697 719 697 719 0.97

14 27 0.00023 0.0062 17.5 3.4 1 23 725 747 725 747 0.99

15 27 0.00042 0.012 16.6 1.4 1 23 753 775 753 775 0.98

16 27 0.00057 0.016 16.2 0.6 1 23 781 803 781 803 0.97

17 27 0.00077 0.021 15.8 3.2 1 23 809 831 809 831 0.98

18 27 2e-06 5.4e-05 24.0 0.8 1 20 837 856 837 858 0.96

19 27 5e-06 0.00014 22.7 0.2 2 23 1034 1055 1033 1055 0.97

20 27 0.008 0.22 12.6 1.3 1 23 1061 1083 1061 1083 0.99

21 27 1e-06 2.8e-05 24.8 0.7 1 23 1089 1111 1089 1111 0.99

22 27 0.00095 0.026 15.5 1.2 1 23 1117 1139 1117 1139 0.97

23 27 4.8e-06 0.00013 22.8 3.5 1 23 1145 1167 1145 1167 0.99

24 27 0.00073 0.02 15.9 2.2 1 23 1173 1195 1173 1195 0.98

25 27 0.00051 0.014 16.4 0.7 2 23 1202 1223 1201 1223 0.96

26 27 0.00028 0.0076 17.2 2.5 1 23 1229 1251 1229 1251 0.98

27 27 3e-06 8.3e-05 23.4 2.8 1 23 1257 1279 1257 1279 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0044	0.12	13.4	1.7	1	23	193	215	193	215	0.98
2	27	7.2	2e+02	3.3	4.1	2	19	222	239	221	242	0.88
3	27	6.7e-05	0.0018	19.2	5.8	1	23	249	271	249	271	0.98
4	27	2.2e-05	0.00061	20.6	0.9	1	23	277	299	277	299	0.97
5	27	7.4e-05	0.002	19.0	2.7	1	23	305	327	305	327	0.98
6	27	0.00017	0.0045	17.9	2.4	1	23	333	355	333	355	0.99
7	27	0.00015	0.0042	18.0	0.9	1	23	361	383	361	383	0.97
8	27	0.0015	0.042	14.9	3.0	1	23	389	411	389	411	0.98
9	27	2e-06	5.4e-05	24.0	0.8	1	20	417	436	417	438	0.96
10	27	1.6e-06	4.3e-05	24.3	0.3	2	23	614	635	613	635	0.97
11	27	0.00043	0.012	16.6	2.1	1	23	641	663	641	663	0.99
12	27	1.6e-06	4.5e-05	24.2	0.6	1	23	669	691	669	691	0.99
13	27	0.0011	0.029	15.4	1.1	1	23	697	719	697	719	0.97
14	27	0.00023	0.0062	17.5	3.4	1	23	725	747	725	747	0.99
15	27	0.00042	0.012	16.6	1.4	1	23	753	775	753	775	0.98
16	27	0.00057	0.016	16.2	0.6	1	23	781	803	781	803	0.97
17	27	0.00077	0.021	15.8	3.2	1	23	809	831	809	831	0.98
18	27	2e-06	5.4e-05	24.0	0.8	1	20	837	856	837	858	0.96
19	27	5e-06	0.00014	22.7	0.2	2	23	1034	1055	1033	1055	0.97
20	27	0.008	0.22	12.6	1.3	1	23	1061	1083	1061	1083	0.99
21	27	1e-06	2.8e-05	24.8	0.7	1	23	1089	1111	1089	1111	0.99
22	27	0.00095	0.026	15.5	1.2	1	23	1117	1139	1117	1139	0.97
23	27	4.8e-06	0.00013	22.8	3.5	1	23	1145	1167	1145	1167	0.99
24	27	0.00073	0.02	15.9	2.2	1	23	1173	1195	1173	1195	0.98
25	27	0.00051	0.014	16.4	0.7	2	23	1202	1223	1201	1223	0.96
26	27	0.00028	0.0076	17.2	2.5	1	23	1229	1251	1229	1251	0.98
27	27	3e-06	8.3e-05	23.4	2.8	1	23	1257	1279	1257	1279	0.98

Sequence Information

Coding Sequence: ATGGATATGCTTATACTTAATGGCGATTTCAACGAATTATGcagaatttgtttaaacaacaaaaaattgttgtttaATATATTCACAGTTTCATCAAAAATCGGAGTTTCTATAATGACAGCAATTATTGACTGTGCTTCCGTCCGTATAAAGAAAAGCGACGGATTTCCTGAATCGATATGCGAATCTTGTCACGTACAACTTGAAACagcttataattttaaaaaattggcacAAAAATCAGACgaaatacttgaaaattgtttaaaacagtCGAGAAACATTACAAAAAAGTCTATTGCAAATGAAGCGAATGGACAGTCAAATAATTCAATTGTTAGACTTGAAACGCATATTGAAAATACTACAGGAAAATTCAACGAATCAAATTGGGAAGGTGCTTGTAAAAATGAacaggaaacaaaatatttacaggaTTTTATTAAACAAGAAAGCGAAAAAACTGACAGTCAGAGTTCTGTCATTAATACCGATAACGACGACAAAAATGAACAGACGAAGGCTGAGAGAACAAATGAAGGATGTTTGATCataaaaaacgaagaaaataaatgttacaactgtggtgtttgtaataaattattttcaagtttacaCGCCATTAGAGCTCACCGAAGGAAGCACGATAAAAAAGAATCGGTAAAATGTACAATATGTGAGAGAAATTTTGTTTCTGCTCGATATCTGAATTGTCACAAGTGTAAAAAGACACCTGAAAGCATACACAAATGCAACATTTGCGGTAAAACATTTCAAAGAACTAGTAATTTCAATATGCACAAACGAAGACATACTGGTGATAAGCCGTACCgctgtgacgtttgtaataagtcgTTTGTCCGTTCGAGTGAATTACGCGGCCATTCTTTAAAACACACGGGCGAAAAGAAGTATCAATGTAacatttgcaataatttttttactcgaAAATCAACGTTAGAAATACATAAACAGAGACATACTGGCGCAAAACCATATCAATGCAACATTTGTAACAAATGTTTCATGTTGCCGTATGAATTAGTGATCCATAAACGTAagcataccggtgagaaaccataccagtgtgaaaTTTGCGGTAAAAGTTTTGTCGATTTTCCAACGTTTAGTAAACATAAACAGTTACACACCGGTGCAAAACCTTACAAGTGTGAAGTTTGTAATAGATGTTTTTCGCAGCGCGGTATATTAAAAACTCATAGCCGGGTTCACACCGGagaaaaaccatatcaatgtgacgatTGTGGTAAAAGTTTTACTTCTTACAGTTCTTTTAGAAAGCATATTTCTGAAAATGACGGCCTTCCACCATCAATATGCAAATCATGTCAAAAACAACTCGAAGTAGCTCACCAATTTCAAACTGTAGCACTGAAATCTGATAAAATTCTTCAGACATATCTTAAACAAAAACAGCataatcaattaaattattctttaacaTATTCAAGTAGTAAGTACAAGGAGGAATTGGATTTTATTGATTTTGGTAATAATTGTCCTCAAACCCATCATAGCCAACCGATTGTCAAAGTTGAAGTATTGTCTGATTTTACAACCAGATCTACTAATTTTGTGAGTGCAAACAATACAGGAAAACGTTATAGCACAGAAAAAGATGATAACGAAGTGAAACATTTATGTGCAGTTCCAGAAAACAGTCCTATTAAACAAGAAAACAACgcaataaaacaagaaaataatatcaaactGGAAAACGAAACAAGTGACAGTGTTGACGATGATAAAACAAATGACGATGCCAATAAACCAACGCATACAGATTGCATGTCAAAAACGCAACGTGAAGAATGTCTTCAGTGTGAAATCTGTGACAAAACGTTTGCGCGATCGTCAACTTTACGAATTCACGAACGAATACATACTGGGGAGAAACCATTTAAATGCACAGTTTGCAACAAAGCATTCGTATCTGTAAGTAGATTAAATTATCACAAACGTAGACACGATagtaagaaattatacaagtgCGATATCTGTGATAAAGCATTTAATAGATCTGGCGATCTTTGGATGCATAAACGTCGTCATGCAGGCGATAAACCACATCGATGTGACGTTTGCAACAAGTCGTTTCTTCGACCGTTTGAATTGCGCGCGCATATTGTTAAACATACCGGGGAAAAGAAATATCAATGCGATATTTGTGATAACTTTTTCACGCGAAAATATACTTTGAATTTgcataaaaagaaacatttaggTGAGAAAAATCATCAGTGCGACATGTGCGAAAAAAGATTTGTACTTCCATATGAATTGCTGGCCCATAAACGTAAACATACGGGCGAGAAAGTTTACCAATGTGAAATTTGCGGGAAAGGTTTTGTCGACTTTCCAACATTTAGTAAACATAAACAGCTACATACTGGTGATAAACCTTTTaagtgtgatatttgtaataGATGCTTTTCACGGAACGGTATATTGAAAACCCATAGTCGGGTTCACACTGGAGAAAAACCTTACCAATGTGACGATTGCGGTAAAAGTTTTACTTCGTACAGTTCTTTTAGAAAGCATATTTCTGAAAATGACGGCCTTCCACCATCAATATGCAAAACATGTCAAAAACAACTCGAAGTAGCTCATCAATTTCAAATCGTAGCACTGAAATCTGATAAAATTCTTCGGACATATCTCAAACAAAAACAACGTAATCAGTCAAATTATTCTTTGACATATTCAAATAGTGAGTGCAAGGAGGAATTGGATATTACCGATTTTGGTAATAATTGTCCTCAAGTCCCTTATAGTCAGCCGATTGTCAAAGTTGAAGTTTTGTCTGATTTTACAACCACATCTACTAAATTTGTGAATGAAAACAATACAGAAAAACTTAGTAACACAGACAAATACAATTACGAAGCGAAATATTTATGTACAGTTCCAGAAAACAGTCCTATTAAACAAGAAAACAACGCAATAAAACAAGAAATCAATATCAAACTTGACATCGAAACAAGTGACAGTGTTGACGATGATAAAACAATTGACGATGCCAATAAACCAACGCATACAAATGATGTGTCAAAAACGCAACGTGATGGATGCCTTCGGTGCGAAGTCTGTGACAAAACGTTTGCGCGATCGGTAAATCTACGTATTCACGAACGAATACATACTGGGGAGAAACCGTTTAAATGCACAGTTTGCAACGAGGCATTCATATCTGTGAATAGATTAAATTATCACAAACGTAGACACGATAGGAAGAAATTATACAAATGCGATATCTGTGATAAAGTATTTAATAGATCTGGCGATCTTTGGATGCATAAACGTCGCCATGCAGACGATAAACCACATCGATGCGACGTTTGCAACAAGTCGTTTCTTCGACCGTTTGATTTACGCGCGCATATTGTTAAACATACCGGGGAAAAGAATTATCAATGCGATATTTGTGATAAATTTTTCACGCGAAAATACACTTTGAATGTgcataaaaagaaacatttaggTAAGAAAAATCATCAGTGCGACATGTGCgaaaaaagatttgtatttcCATTTGAATTACTGGCACATAAACGTAAACATACGGGCGAGAAAGTTTGCCAATGTGAAATTTGCGGGAAAGGTTTTGTCAACTTTCCAGCACTTAGTAAACATAAACAGATACATACTGAAGCTAAACCTTTTaagtgtgatatttgtaataaatgctTTTCACGGAACGGTATATTGAAAATCCATAGTCGGGTTCACACTGGAGAAAAACCATACCAATGTGACAATTGCGGTAAAAGTTTTACTTCGTACAGTTCTTTTAGAAGGCATGCCCAAAAACATgcagaaaaattataa
Protein Sequence: MDMLILNGDFNELCRICLNNKKLLFNIFTVSSKIGVSIMTAIIDCASVRIKKSDGFPESICESCHVQLETAYNFKKLAQKSDEILENCLKQSRNITKKSIANEANGQSNNSIVRLETHIENTTGKFNESNWEGACKNEQETKYLQDFIKQESEKTDSQSSVINTDNDDKNEQTKAERTNEGCLIIKNEENKCYNCGVCNKLFSSLHAIRAHRRKHDKKESVKCTICERNFVSARYLNCHKCKKTPESIHKCNICGKTFQRTSNFNMHKRRHTGDKPYRCDVCNKSFVRSSELRGHSLKHTGEKKYQCNICNNFFTRKSTLEIHKQRHTGAKPYQCNICNKCFMLPYELVIHKRKHTGEKPYQCEICGKSFVDFPTFSKHKQLHTGAKPYKCEVCNRCFSQRGILKTHSRVHTGEKPYQCDDCGKSFTSYSSFRKHISENDGLPPSICKSCQKQLEVAHQFQTVALKSDKILQTYLKQKQHNQLNYSLTYSSSKYKEELDFIDFGNNCPQTHHSQPIVKVEVLSDFTTRSTNFVSANNTGKRYSTEKDDNEVKHLCAVPENSPIKQENNAIKQENNIKLENETSDSVDDDKTNDDANKPTHTDCMSKTQREECLQCEICDKTFARSSTLRIHERIHTGEKPFKCTVCNKAFVSVSRLNYHKRRHDSKKLYKCDICDKAFNRSGDLWMHKRRHAGDKPHRCDVCNKSFLRPFELRAHIVKHTGEKKYQCDICDNFFTRKYTLNLHKKKHLGEKNHQCDMCEKRFVLPYELLAHKRKHTGEKVYQCEICGKGFVDFPTFSKHKQLHTGDKPFKCDICNRCFSRNGILKTHSRVHTGEKPYQCDDCGKSFTSYSSFRKHISENDGLPPSICKTCQKQLEVAHQFQIVALKSDKILRTYLKQKQRNQSNYSLTYSNSECKEELDITDFGNNCPQVPYSQPIVKVEVLSDFTTTSTKFVNENNTEKLSNTDKYNYEAKYLCTVPENSPIKQENNAIKQEINIKLDIETSDSVDDDKTIDDANKPTHTNDVSKTQRDGCLRCEVCDKTFARSVNLRIHERIHTGEKPFKCTVCNEAFISVNRLNYHKRRHDRKKLYKCDICDKVFNRSGDLWMHKRRHADDKPHRCDVCNKSFLRPFDLRAHIVKHTGEKNYQCDICDKFFTRKYTLNVHKKKHLGKKNHQCDMCEKRFVFPFELLAHKRKHTGEKVCQCEICGKGFVNFPALSKHKQIHTEAKPFKCDICNKCFSRNGILKIHSRVHTGEKPYQCDNCGKSFTSYSSFRRHAQKHAEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -