Vnig004537.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
Znf516
Assembly
GCA_034508555.1
Location
JAVRKA010000008.1:7426213-7433883[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 0.004 0.11 13.6 3.8 2 23 171 193 170 193 0.97
2 33 2.5 67 4.8 3.7 2 23 199 221 198 221 0.93
3 33 9.2e-05 0.0025 18.7 1.9 3 23 242 262 241 262 0.97
4 33 0.00011 0.003 18.5 0.2 1 23 268 291 268 291 0.96
5 33 0.14 3.9 8.7 1.0 3 23 339 359 337 359 0.95
6 33 0.0079 0.22 12.6 2.4 1 23 365 388 365 388 0.98
7 33 0.061 1.7 9.8 0.3 2 23 457 478 456 478 0.97
8 33 0.00015 0.0042 18.0 0.4 1 23 484 507 484 507 0.96
9 33 0.61 17 6.7 0.9 2 23 552 573 551 573 0.97
10 33 4.6e-05 0.0013 19.6 1.2 1 23 579 601 579 601 0.99
11 33 0.0076 0.21 12.7 1.7 1 23 607 629 607 629 0.91
12 33 0.27 7.5 7.8 3.8 1 23 635 657 635 657 0.95
13 33 0.00023 0.0062 17.5 2.8 3 23 665 685 663 685 0.96
14 33 8.5e-06 0.00023 22.0 0.2 1 20 691 710 691 713 0.94
15 33 0.00022 0.006 17.5 3.8 1 21 719 739 719 741 0.95
16 33 9.2e-05 0.0025 18.7 1.1 1 23 747 769 747 769 0.94
17 33 1.3e-06 3.5e-05 24.6 0.8 1 23 775 797 775 797 0.98
18 33 0.00048 0.013 16.5 0.8 1 23 946 968 946 968 0.97
19 33 0.033 0.91 10.7 0.2 2 23 1013 1034 1012 1034 0.97
20 33 0.00087 0.024 15.6 0.7 1 23 1040 1063 1040 1063 0.97
21 33 0.0018 0.05 14.6 4.0 2 23 1081 1102 1080 1103 0.94
22 33 9.4e-05 0.0026 18.7 5.2 1 23 1108 1130 1108 1130 0.99
23 33 0.047 1.3 10.2 0.2 2 23 1231 1252 1230 1252 0.97
24 33 0.0078 0.21 12.6 2.6 1 23 1258 1281 1258 1281 0.98
25 33 0.00022 0.006 17.5 1.9 1 23 1286 1308 1286 1308 0.98
26 33 0.0015 0.042 14.9 1.1 1 23 1314 1336 1314 1336 0.91
27 33 0.065 1.8 9.7 1.3 1 23 1342 1364 1342 1364 0.96
28 33 2.5e-05 0.00069 20.5 0.0 1 23 1370 1392 1370 1392 0.96
29 33 1.3e-05 0.00036 21.4 0.4 1 20 1398 1417 1398 1420 0.93
30 33 6.7e-07 1.8e-05 25.4 0.5 1 23 1426 1448 1426 1448 0.98
31 33 9.8e-05 0.0027 18.6 1.6 1 23 1454 1476 1454 1476 0.96
32 33 3.8e-06 0.0001 23.1 1.2 1 23 1482 1504 1482 1504 0.98
33 33 0.025 0.7 11.0 4.9 1 23 1510 1532 1510 1532 0.97

Sequence Information

Coding Sequence
ATGTCTAAGTTACCTGATTTTTCTACAACTTGTCGAACTTGTTTAAAAGAAAGTTGTACCGCTGTTGTGTCAGTGTTCGATGCGAATTACTTAGATTCCGATAAACATAaactgtcagaaatattattagaaTGTGCTTCTTTAAAGATTTCATCGAATGATAAACTTCCAAAAGTAATGTGTACAGATTGCGCAACGACAGTTAAAAACTGTTATCGATTTAAACAATTATGCCATAAATCAGAACTAGCCTTATTagaattaataaagaaatacgAAATCTCACAGTCCAATGCAATACTTGCTATAAAGTCTGAGAATTTGGATACAGATCTAGACAGTTCTGATCTCCTGATTAAAGAAGAGGCAGACAACGCGTCTGTAAGTGACTACGTTTACATCGGTGAAAATGTCGAAGTGAAATTAGATAACGAATTTAATAGTTCTGATGACGAGCCATTATCGCTTAGGGCAGGCGGGAAAACACAAATCAAATTCAGGGACGATTTACAATGTAATATTTGTAACAAATTTTACAGAACTAAGTACACTTTGGCCTGCCATATTCGTACGCAACATTccgaccaaaaaataaaatgtgaacATTGTGCCGAATCATTTTCATGTCTTTACGATTTAGAGAAACACAATAAACAAACGCATGGAATGAAAATCAAATTCAGAAGAAAGAAACGTTCTCATATAGTAGGCGAAAAACCTTACTGTTTTAtttgtgataaatattttacatcaaGATATAATCTCGATTCTCATATGAAAAGACACATTGGCGATAAGAATTTTAAATGCGGCGTGTGTGAAAAAGGATTCATAACAAAATGGGATTTGATTCGTCATAAAAGGGGAGTTCACGGTACGGACCTCGATGACAAAGACGTTGAACCTCAAACCGATAGCGAAGTATTTGTAGAAAATCCAAACGATATCGATATGAAATCACCGCTCGAGTTTTTGAAGAATTTAACGCGTTTAGATTTCAAAAATGGCGTGAattgtacattttgtaaaaagttattttatgtgAGATCTGATTTAGAAATGCATTTCATAAGGCACTTGACAATAAAAACGTTTAAATGTGATCTTTGTAGCGAGACATTTTCTGGGTTTTTCGAACTGACGCAACACAGGAAAAAAACGCACAGAAAAAGAAACTGTTCCGAATTCAACGGCACGGATATGAATAATGGAGGTGAAAATTCTGATAATGCAGTTAGCGAGTTTGGCGGAcgtgaagttttaaaattaagcgATTTAATCAAATCCGAGGCGATCGACAATGAAGACTTACATCCGGATTTggaatatgtcaaaaaaattccaagaatacaatttaaaaaaggtGTAAAGTGTGATCGATGTCCTAGAGTTCTTTACAAAAGATCCGATATGGAAATACATATTAGTCGACATTTAGGAATAAAGAGTTTTCCGTGTCAAATTTGTTCGAAGTCATTTGTAGTCATCTCCGACTTAACCAGACATAGAAAAAATGTTCATTCTGATTTATTGAATGACGATATTGGGGATGAAGATTATGTCCGTTTAGAGAATCAGGACGTAACCGATGAacttaaagaagaaaaaactgaTTTGAGTTTACCGAGTagcaaatttacaaaatatccgATCGAATGCAAGGTGTGCTTGCGAACGTTTTGGAAAAAGTCCAATTACGATTTACACGTTAAACGGCATCTAGGAGTAAGGAAATTTAAATGCGAAGTGTGTGCGAAGAAATTTATTGCGCGATACGATTTGAAAAGGCACTTAAGAACCCACGGGAAGTTAACGGGCTTTCATTGCAAACACTGTTACAAGAGTTTCGAAGGCAGCGATGAATTAGAAGCTCACGCTGTCGAACACGAAAACGATGCTCCGCACATCTGTCAAGAATGCGGAAAACAGTTTTTAAGGAGAAGAAGTTTGTGCCTTCACAAGGCTgttCATACAGGCGAAAGGCCTCATTTATGTACAGTCTGCGGACGAGCTTTTGCTCTTTCGTGTAATTTAAAAACTCATATGCGAATCCACAATGGTGAAAAGCCGTATACTTGTAAAGTGTGCGGTAAAGCGTTTACGCAGTGGGGATCTCTGCGAAGTCATTTGCCAGTTCATTCGGACGAGAAACGGTTTGTTTGTCAGACTTGTGGCAAGGCGTTCAGACGACAAAATACGCTGAGGTCTCACCTGAGGTGCCACACCGGTGTTCGCAATTTTCCTTGTTCAATGTGCGACAAGCGATTTTACGATAGCAGCATGTTGAGAAAACATTTTGTTGTTCATACAGggGAGAAAAACTTCAAATGTGATATTTGCAACAAAGCATTCAACCGATCGAGTACGCTGCGCGTTCATGTTAAAATTCATAGCGGCGAACGGCCGTTTGTCTGTACGATTACATCGGATGACGCTTTACCCAAACTAATCTGTGAAAAATGTGCGGACCAGTTGAAAATCGGCTATGAGTTCAAGCTTATGTGTCATAACACAGAAAAAGAGTTCCTTAAATTGATAGGAAAAGAATTagtaagtaatataaaaaacgaGCCTAGTATTAAAGAAGAAAGTATTTCGATAGAAACGGTTAACATTAAAAACGAACAGATCGATGCTTCATCCGTTGACGAAAAATGTTCCAATGATTCAGACAATCTTGGTGATTGgcaaattaataatgaaattgaacCTGAACCAAACCAAATAGTcgctataaaaacaaaacaaattaataagacgtcgaaacagtttaaaaaaggtgccgaacGCAATGAATTACCAAAAGTTTTTGACAAGAATTCTGATTTTCAAACACATTCGTGCGAAATCTGTTCAGAACAATTTACAGCCAAGTCTGATTTaactgaacatttaaaaaagcatCCCAAAATTAATGATAACCTCGATGATAATAGTTCAAATGATAATCAAGAAAAAGAGGAACAAACTGAAGATATTCATCCCGACTTAGAACATGTTAGAAATATACCGCTCgaacaatttaaaataggtataaaatgcaataaatgTCCCAGAATATTATTCAGCAGATCAGATATGGAAATACATATTATTCGTCACATAggaataaaaaagtttccgtgTTCGCTTTGTTCGAGGTCATTTGCAGTATCTTATGATTTGACGAGTCACAAAAAAAGAATACATGCTACAAATAAAGACAACtcacaagaaaaaaaatcagcaaTCAGTTCCTTAGAATGTCAAATGTGCTCAAAGACGTTTTCGCGAAAGAAAACTTATGATTCACATATGATAAGACACCACGGTGTCAAgaaattcaaatgtgatttttgttCGAAAATGTGTATTACGCAATATGATTTAAAAAGACATTTGAGAACGCATGGGAATCTGTCGGGCTTCCAGTCTAAGCATAGTATGAGAAACTTTGAAACAAAAGACGAACATAATACAGTCGAACATCCCAGTCAATGCAATGAGACAATTTCTAGATTTTTTGAACTGAATGATACGCAAGTGAAAAGTGTACCTGAAAACTCTGATAATGCAGCTAGCGAGTTTGGTAACCGTGACGTTTTAAAATCGAgagatttaataaaatctgaGTCCATCGAAAATGAAACCTTACCTATGGATTTAGAGTATCTCAAAAACAtctcaaaaatacaatttaaaaaaggtGTGAAGTGTGGTCAATGTCCTAGAGTTCTTTACAGAAGAATAGATATGGAAAAGCATATTAGTCGACATttagaaataaagaaattttcatGTCAAATTTGTTGCAAGTCGTTTGTTGTTATGTCCGACTTAACAAGACATACAAAAACTGTACATTcagatttaaaatttacgtgCAAAGTATGTCTGAAGGAATTCATGACGGAATACTATTTGAAAAGACACTTGAGAATACACGGGGAGTTAACGGGTTTTCATTGTAAATATTGTTCCAAGAGTTTTGATGGCAGCGATGAATTAAAGGCTCACGCTGTGGAGCACGAAAACGATACTCCATATATTTGTCAAGAATGcggaaaacagtttttgaaaaaGGAAAGTTTGCATCTCCACAAGGCTGTTCACACAGGCAAAAAGCCTTATTTATGTACAGTCTGCGGACGAGCTTTTGCTCTCTCGGGTAATTTAATAGTTCATATGCGAATACACAGCGGCGAAAAACCGTATAAATGCAAAGTGTGCGGCAAAACGTTTACGCAGTGGGCATCTCTCCGAGGTCATTTGCCTTCGCATTCAAACGAAAAACAGTTTGTGTGTCAGACTTGTGGCAAGGCGTTCAGTCGGAGCAATGCGCTGAGAGCTCATCTAAGGCGCCACGCCGGTGTACGCAATTTTCCTTGTTCAAAGTGCGACAAGCGATTTTATAGCAGCGACGGGCTCAGGAGACATTTTGTTACGCATACAGGAGAGAAGAATTTCAAATGTGAATTTTGCGATAAAGCATTCAACCGATCGAGTACGCTGCGCGTTCACGTTAAAATTCACAGCGGTGAGCGGCCGTTTGCTTGTACGATGTGCGAACGAAGTTTTCTACAAAAACATTGTCTTATTAGTCATATGAATACGCATCAATAA
Protein Sequence
MSKLPDFSTTCRTCLKESCTAVVSVFDANYLDSDKHKLSEILLECASLKISSNDKLPKVMCTDCATTVKNCYRFKQLCHKSELALLELIKKYEISQSNAILAIKSENLDTDLDSSDLLIKEEADNASVSDYVYIGENVEVKLDNEFNSSDDEPLSLRAGGKTQIKFRDDLQCNICNKFYRTKYTLACHIRTQHSDQKIKCEHCAESFSCLYDLEKHNKQTHGMKIKFRRKKRSHIVGEKPYCFICDKYFTSRYNLDSHMKRHIGDKNFKCGVCEKGFITKWDLIRHKRGVHGTDLDDKDVEPQTDSEVFVENPNDIDMKSPLEFLKNLTRLDFKNGVNCTFCKKLFYVRSDLEMHFIRHLTIKTFKCDLCSETFSGFFELTQHRKKTHRKRNCSEFNGTDMNNGGENSDNAVSEFGGREVLKLSDLIKSEAIDNEDLHPDLEYVKKIPRIQFKKGVKCDRCPRVLYKRSDMEIHISRHLGIKSFPCQICSKSFVVISDLTRHRKNVHSDLLNDDIGDEDYVRLENQDVTDELKEEKTDLSLPSSKFTKYPIECKVCLRTFWKKSNYDLHVKRHLGVRKFKCEVCAKKFIARYDLKRHLRTHGKLTGFHCKHCYKSFEGSDELEAHAVEHENDAPHICQECGKQFLRRRSLCLHKAVHTGERPHLCTVCGRAFALSCNLKTHMRIHNGEKPYTCKVCGKAFTQWGSLRSHLPVHSDEKRFVCQTCGKAFRRQNTLRSHLRCHTGVRNFPCSMCDKRFYDSSMLRKHFVVHTGEKNFKCDICNKAFNRSSTLRVHVKIHSGERPFVCTITSDDALPKLICEKCADQLKIGYEFKLMCHNTEKEFLKLIGKELVSNIKNEPSIKEESISIETVNIKNEQIDASSVDEKCSNDSDNLGDWQINNEIEPEPNQIVAIKTKQINKTSKQFKKGAERNELPKVFDKNSDFQTHSCEICSEQFTAKSDLTEHLKKHPKINDNLDDNSSNDNQEKEEQTEDIHPDLEHVRNIPLEQFKIGIKCNKCPRILFSRSDMEIHIIRHIGIKKFPCSLCSRSFAVSYDLTSHKKRIHATNKDNSQEKKSAISSLECQMCSKTFSRKKTYDSHMIRHHGVKKFKCDFCSKMCITQYDLKRHLRTHGNLSGFQSKHSMRNFETKDEHNTVEHPSQCNETISRFFELNDTQVKSVPENSDNAASEFGNRDVLKSRDLIKSESIENETLPMDLEYLKNISKIQFKKGVKCGQCPRVLYRRIDMEKHISRHLEIKKFSCQICCKSFVVMSDLTRHTKTVHSDLKFTCKVCLKEFMTEYYLKRHLRIHGELTGFHCKYCSKSFDGSDELKAHAVEHENDTPYICQECGKQFLKKESLHLHKAVHTGKKPYLCTVCGRAFALSGNLIVHMRIHSGEKPYKCKVCGKTFTQWASLRGHLPSHSNEKQFVCQTCGKAFSRSNALRAHLRRHAGVRNFPCSKCDKRFYSSDGLRRHFVTHTGEKNFKCEFCDKAFNRSSTLRVHVKIHSGERPFACTMCERSFLQKHCLISHMNTHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-