Vnig006006.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000012.1:656335-658989[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 2.1e-06 5.7e-05 23.9 5.5 1 23 99 121 99 121 0.98
2 22 0.00026 0.0071 17.3 4.6 1 23 127 149 127 149 0.97
3 22 9.2e-05 0.0025 18.7 4.6 1 23 155 177 155 177 0.97
4 22 8.9e-06 0.00025 21.9 2.3 1 23 183 205 183 205 0.98
5 22 7.2e-06 0.0002 22.2 3.9 1 23 211 233 211 233 0.96
6 22 7.6e-06 0.00021 22.1 1.4 1 23 239 261 239 261 0.99
7 22 4e-06 0.00011 23.0 2.9 1 23 267 289 267 289 0.98
8 22 9.6e-06 0.00027 21.8 3.8 1 23 295 317 295 317 0.98
9 22 6.8e-06 0.00019 22.3 3.7 1 23 323 345 323 345 0.97
10 22 4.4e-06 0.00012 22.9 2.4 1 23 351 373 351 373 0.98
11 22 6.5e-06 0.00018 22.3 4.2 1 23 379 401 379 401 0.99
12 22 1.3e-06 3.5e-05 24.6 1.4 1 23 572 594 572 594 0.99
13 22 1.5e-07 4.1e-06 27.5 2.8 1 23 600 622 600 622 0.98
14 22 0.00035 0.0097 16.9 6.0 1 23 628 650 628 650 0.97
15 22 5.5e-06 0.00015 22.5 2.6 1 23 656 678 656 678 0.98
16 22 5.1e-07 1.4e-05 25.8 2.3 1 23 684 706 684 706 0.99
17 22 1e-05 0.00028 21.7 2.2 1 23 712 734 712 734 0.96
18 22 1.1e-05 0.00031 21.6 3.1 1 23 740 762 740 762 0.98
19 22 0.00024 0.0067 17.4 4.7 1 23 768 790 768 790 0.97
20 22 0.00027 0.0074 17.2 5.7 1 23 796 818 796 818 0.98
21 22 5.2e-06 0.00014 22.6 2.1 1 23 824 846 824 846 0.99
22 22 9.7e-05 0.0027 18.6 1.6 1 23 852 874 852 874 0.93

Sequence Information

Coding Sequence
ATGGATGATAATTCATTGTTACTAGCTGATTATGCTGACGATGAAGAATTTAGCTTTAAGGATTCTAAAATTGCCCATAGTGACCCTCAAgtaaatttagatatagaaaaaaacggtaaagaaaaaaaatctggattTCTTAATTCAGCAAACGAAATCGTCAATGAACGAATGTTCATAAAATCTGAAATAAAGAAAGAACCTGTGGATGATGCTTCATTAATACTTTCACCAAAACATGTTGATGACAAACTAAACGTGTCGTCTATGATTATGCATACTGATAAGAAATCATATCAGTGTGAACTTTGCAAGAAGTGCTTTACCACatcatcaaatttaaaaaaacataatcgtATTCATACTGGTgtgaaaccatatcaatgtgacgtttgtgataagtgtttttttaaaccatcAGACTTAAAAAGTCATAGTCACGTTCATAGTGGTGAAAGACCATATCAGTGTATTGTTTGCAAAAAATGCTTTACTTCATCATCAAATTTAAAGAAACACAATCGTGTTCATACTGGAGAAAAACCCTATCGATGTGACGTTTGTCAGAAGTGCTTTGTTGTTCCTTCACAGTTAAAGAAACACAATAGAGTTCATACTGGTGAAAGGCCATATCGTTGTAACGTTTGTGAAAAGTGCTTTACGACGTCATCAAATTTGGAAAAACATAACCTCAATCATACAGGCGAAAAACAGTATCAGTGTGTCATTTGTAATAAGGGCTTTGTTGATTTTTCACAGTTAAAGAAACACAATCGAactcatactggtgaaaaaGCATTCCGTTGTAACATTTGTGAAAAGTCCTTTACTACATCATCTTATTTAAAGACACATAATCGCCTTCATACTGGggaaaaaccatatcagtgtcaCTTTTGCAAAAAGAGCTTTGCTGATTCATCGCAGCTTAAAGATCACAATCGCGTGCATACTGGTGAAAGGCCATATCGTTGTAACATTTGTGCAAAGTGCTTTACTACGTCATCAAATTTGAAGAAGCACAATCTCATTCATACAGGggaaaaaccatatcagtgtgttGTTTGTAAGAAGTGCTTTGTTGATCCTTCACAATTAAAGAAACACAATCGAATTCATACTGgggagaaaccatatcagtgtgatatttgtaaaaagtgctttACTATATCATcaaatttaaagaaacataGTCGCATCCACACGGGGGAGGAACCTGACCTTGatgataatttattgttatcaACTGATTATGCTGGCGATGGAGAACTTTGCTGTGAAGATTCAAAAATCGATAATAGTGACACAAAAGTAGGTTTAGATATAGATAAAAActgtgaagaaaaaaaatctggaacTCTTAATTCAACAAATGAAATGAGCGGACAAATGTTCTTAAAAACCGAAATCAAAGATGAATTGATAGATGATAATTCATTGTTGTTAACTGCTTATGCTAGCGATGCAGAATTTGACTGTGAGGACTCAAAAATCGATAATAATGATACTAAAGTAGGTTTAGATATAGATAAAAAACGCAATGAAAAAAATgctgcattttttaattcaacaaaCGAGATCAATGAACAATTGTTCTTAGAATCCGAAATCAAGAAAGAATCCGTGGATGAGAAATCATTAATGCTTTTACCAGAAAATGTTGATGACGAATTAAAAGCGACGTCTATGATTATACATACTGAtaagaaaccatatcagtgcgaCGTTTGCAAGAATTGTTTTGCTGATCCATCACAGTTAAAGAAACACATTCGCGTTCATGTTGGGGAGAAACCATTtcaatgtgatatttgtaaaaagaGCTTTACTACATCGTCAAATTTAAAGAAACACAATCGTATTCATGCTGGTgtgaaaccatatcagtgtgatacttgtgataagtgtttttttaaaccatcagatttaaaaaaacacagtcACGTTCATAGTGGTGAAAGACCATATGAATGTgttgtttgtaaaaaatgctttgCTTCATCATCAAATTTAACGAAACACAATCGAGTTCATTCtggagagaaaccatatcagtgtgacatatGCAAGaagtgttttattgatccttcACGGTTAAAGAAGCACATTCGCGTTCATACTGGTGAAAGGCCATTTCGCTGTAACGTTTGTGAAAAGTACTTTACCACGTcatcaaatttgaagaaacacaATCTAATTCATACAGGGGAGAAACCATATCGGTGTCTCGTTTGTAAGAAATGCTTTATTGATCCTTCACAGTTAAAGAAACATAATCGAATTCATACCGGTGAAAAGCCATTTCGTTGTAACGTTTGTGAAAAGTGCTTCACTGCATCATCTGATTTAAAGAAACATAATCGCTTTCATACTGGGGAAAGACCGTATCATtgtgatttttgtaaaaagtgcttTGCTGATTCATCACAGCTTAAGGATCACAGTCGCgtgcatactggtgaaaaaccatatcagtgtgacgtttgtaaaaagcgCTTTTCTATATCATcaaatttaaagaaacataGTCGCATCCACACGGGGGTAAAACCATATAAGTGTAATGTTTGCAGCAAAGGTTTCTCTAGATCAGAATATTTAAAGGCTCACAATCTCTTCCATGATAAAGAACACAGAACAACCATATtgatgtga
Protein Sequence
MDDNSLLLADYADDEEFSFKDSKIAHSDPQVNLDIEKNGKEKKSGFLNSANEIVNERMFIKSEIKKEPVDDASLILSPKHVDDKLNVSSMIMHTDKKSYQCELCKKCFTTSSNLKKHNRIHTGVKPYQCDVCDKCFFKPSDLKSHSHVHSGERPYQCIVCKKCFTSSSNLKKHNRVHTGEKPYRCDVCQKCFVVPSQLKKHNRVHTGERPYRCNVCEKCFTTSSNLEKHNLNHTGEKQYQCVICNKGFVDFSQLKKHNRTHTGEKAFRCNICEKSFTTSSYLKTHNRLHTGEKPYQCHFCKKSFADSSQLKDHNRVHTGERPYRCNICAKCFTTSSNLKKHNLIHTGEKPYQCVVCKKCFVDPSQLKKHNRIHTGEKPYQCDICKKCFTISSNLKKHSRIHTGEEPDLDDNLLLSTDYAGDGELCCEDSKIDNSDTKVGLDIDKNCEEKKSGTLNSTNEMSGQMFLKTEIKDELIDDNSLLLTAYASDAEFDCEDSKIDNNDTKVGLDIDKKRNEKNAAFFNSTNEINEQLFLESEIKKESVDEKSLMLLPENVDDELKATSMIIHTDKKPYQCDVCKNCFADPSQLKKHIRVHVGEKPFQCDICKKSFTTSSNLKKHNRIHAGVKPYQCDTCDKCFFKPSDLKKHSHVHSGERPYECVVCKKCFASSSNLTKHNRVHSGEKPYQCDICKKCFIDPSRLKKHIRVHTGERPFRCNVCEKYFTTSSNLKKHNLIHTGEKPYRCLVCKKCFIDPSQLKKHNRIHTGEKPFRCNVCEKCFTASSDLKKHNRFHTGERPYHCDFCKKCFADSSQLKDHSRVHTGEKPYQCDVCKKRFSISSNLKKHSRIHTGVKPYKCNVCSKGFSRSEYLKAHNLFHDKEHRTTILM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-