Vnig000902.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000002.1:4589127-4596658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 6.4e-06 0.00018 22.3 2.5 1 23 138 160 138 160 0.98 2 34 0.00043 0.012 16.6 0.9 1 23 166 189 166 189 0.97 3 34 0.032 0.87 10.7 3.0 1 23 197 219 197 219 0.97 4 34 0.024 0.65 11.1 0.9 3 23 227 248 225 248 0.96 5 34 1.5e-05 0.00041 21.2 0.5 3 23 255 275 253 275 0.97 6 34 0.00026 0.0071 17.3 0.5 1 23 284 306 284 306 0.98 7 34 0.00079 0.022 15.8 0.6 1 23 312 334 312 334 0.97 8 34 2e-05 0.00055 20.8 3.4 2 23 341 362 340 362 0.97 9 34 0.0049 0.14 13.3 1.0 1 15 368 382 368 385 0.91 10 34 0.00024 0.0067 17.4 4.1 1 23 430 452 430 452 0.97 11 34 2.3e-06 6.3e-05 23.8 1.8 1 23 458 480 458 480 0.98 12 34 0.00021 0.0057 17.6 4.1 1 23 486 508 486 508 0.98 13 34 0.00058 0.016 16.2 1.3 3 23 516 537 515 537 0.97 14 34 6.5e-05 0.0018 19.2 3.1 1 23 542 564 542 564 0.97 15 34 4.6e-05 0.0013 19.7 6.9 1 23 574 596 574 596 0.98 16 34 0.00028 0.0078 17.2 0.2 1 23 602 624 602 624 0.98 17 34 2.1e-05 0.00058 20.7 1.8 2 23 631 652 630 652 0.97 18 34 1.2e-06 3.4e-05 24.6 3.0 1 23 658 680 658 680 0.98 19 34 0.00021 0.0058 17.6 0.7 1 23 686 709 686 709 0.98 20 34 0.011 0.31 12.1 0.9 1 23 767 789 767 789 0.96 21 34 1.5e-05 0.0004 21.2 1.6 1 23 795 817 795 817 0.98 22 34 0.34 9.4 7.5 4.0 1 23 823 845 823 845 0.94 23 34 0.001 0.028 15.4 3.8 1 23 851 874 851 874 0.97 24 34 0.00042 0.011 16.6 0.7 1 23 879 901 879 901 0.97 25 34 0.057 1.6 9.9 3.9 3 23 1167 1187 1166 1187 0.92 26 34 0.0039 0.11 13.6 1.4 1 23 1192 1214 1192 1214 0.98 27 34 1 29 5.9 0.3 1 23 1220 1242 1220 1242 0.96 28 34 0.049 1.4 10.1 3.0 1 23 1248 1270 1248 1270 0.96 29 34 0.0002 0.0054 17.7 0.5 1 23 1276 1299 1276 1299 0.97 30 34 0.0083 0.23 12.6 2.0 3 23 1312 1332 1311 1332 0.92 31 34 0.016 0.43 11.7 2.2 3 23 1340 1360 1339 1360 0.98 32 34 8.7e-05 0.0024 18.8 2.1 1 23 1366 1388 1366 1388 0.99 33 34 7.4e-06 0.0002 22.1 1.5 1 23 1394 1416 1394 1416 0.97 34 34 0.048 1.3 10.1 0.6 1 21 1422 1442 1422 1443 0.94
Sequence Information
- Coding Sequence
- ATGGGTGATTTATATGACAAGAGTCAGAAAAAAGATCCTTTAATTGGTGAGAACAGTAATTGTAAAATTAAGATTAGTACTAGCATCACAAGTTTAAACAAAGAACATGTTAAGACCGAACTTAAATCACATTTAAAAACTGATCAGACAGCACAGATATTCCCTTTGGAGCAAAATTTGGTTTGGGGTTCAGAAGAAAAGtcaatttcgaattttttgtaTGATTATTTTGTTACTCAATCCAATCGAACCAAACTAATTCAAACTAAACAAGAGAATGTTAACGAAACCGAAAATTCAGTGGACGAAAGTGAAATTGAAAAACAATCAAACCGTGTGGCTCGTGCGAGAAATGCTAAATGTGTGATCAGTTTTAAAGAACATGGTAACATCGAGGACGGCTCAAAACTTTTCAAATGTTCCGTTTGTTCAAAAGAATTCACAAGGAAGAGATATCTGAAACGTCACATTTTAATTCACAGCGGCGAAAAACCTTTCCAGTGTGACGCATGCCCAGCGCGTTTTAATCAAAAAAGCAATCTGCTAACTCACAGAAAATCTCAACATAGCTCCTCATCTTCGAAAAACTTCGCATGCGAATCTTGTTCACATAAATTTAAAACGAAGCAAGGTTTAAAACTGCacgaaatgacacatttaaaaaaatattctttgtttTGCGATATTTGCTCAAAGGGTTTTTTCTTCAGAAACACACTCGAAATTCATAAGCGCAGCGTGCACAGTGAAAAAAGAATTGCATGTGATTTATGTAATAAGTCGTTTTCTACAACGATCTTGTTGAATTCTCATATGAGAACGCATCAAAATATTGCAGAACGAACATTGTATCCTTGCGAAATGTGCGATAAGAAATTTTTGTCTAAAACTGCTTTGCGAAACCATATTAAAGTACATACGGGACAAAGCAATTTTGTTTGTGAAACGTGTGGAAAAGAACTGACATCCAAGCAGAGTTTGAACGATCATACTAAATTGCATTTGGGGTTGAAACCGTTGACTTGTGAAACTTGCGGGAAATGTTTCAGCAAAAGAACGACGCTAAGAGTTCATATACAAACCCATACTGGCGTGAAACCGTACGAATGCAAAGAGTGCGGTAAACGATTTACGCAGAGTTCTTCaacAAACAATACATTCAACTATCTAAAAAACGAAGCACGAGTAACCAACGATGAAAATGGTAGTGTTAGCAACGATAATATAAAACTTGAACTAAAAGAAGATTTAAATGGAAAGATTGCTAAAAAAATGCCTGGAAATATTTTCCGATGTACCCAGTGCTCCAAAACATTCAAAAGTAGATCAAAACTCAATTCTCATAGGGTATCCCACAGCGACATTCGACCTTTTAAGTGTCCTCATTGTCCGAAGATGTTCAAACGAAACTATGAACTCAACGTTCACGAACAAATTCATGACATCGGCAAGAGTTTTAAGTGTACtgtatgttcaaaaatattcaaacgAAAACAGTTGCTCAATTCCCATAAAAAACGTCATACGgagaaatatattgttttttgtgagAAATGTTCCAAAGGATTTTATACGAAACGCGAACTTTCAAATCATATGAACAGTGCGCATGGCGCTAAAGAACATATTTGTGACAAGTGTAGCAAGTCGTTTGTGAGTGACTATTCTCTTCAAAAACATTTGAGAACCCATGACGATAGTTTCGTCCCTCTGAAGAAATATCAGTGCGATTATTGCGGAAAATCGTTTGTGCATAAAAAAAGCTTAAGGCATCATAACAAATCGCATACCGGTGAAAATAGTTATATCTGTGATATTTGTGGTAAGaatttaagttcaaaaaaaaGTCTTTCTGATCATTTGTTAGTTCATTCGGGAATAAAACCGCTAAAATGCGAGGTTTGTGGGAAGTGTTTTGGCAAGAAAACATCGCTTGTTGTTCACTTGAGGACTCATACGAAGGATAAGCCGTATGAGTGCAAAGAATGTGGCAAGTGTTACACTCAAAGAAGCACGCTGGTTATTCACATGCGTTATCATTCTGGCGAAAGGCCTTATCGGTGTACGGCTTGTGAAAAAGGATTTGTCAGTAAATATCTGTTGAATGCGCACCAAAAGAGCCAACATTCCATCAGTAATATTACTTCtataacTAACAATACAACCATCTTTATAAAAGAAGAACACGTAACTGTCGAAGATAATGATAGTATAATAATGAACAGCTATGAAAATATGAAAGTTGAATTAGAAGAATGTAGTTGGGAAATAAAGTTCCCCGAAACATCTAGAAAAGTATTCGAATGTGGACAGTGCtcgaaaacatttaaatataaatcgatCCTGATGAACCACGAGGCATCTCATAGCAATGTTCGACCTTTTAAGTGTTCTCAGTGTTCAAAGGCCTTCAAACGGAATTATCAGCTGAATGCTCACGAACAGATTCATGGTATTGGAAAGATTTTTGAATGTAATGTGTGCTCGAAAGTCTTTAAGCATGAACGGGTTTTGAAGTTTCACAAACAACGTCATTCAAAAGAATATACTTACTTCTGTGAGAAGTGCTCTAAAGGATTTTACAGAAAGTGCGATTTGTCTAATCATATGAATAGTGCCCACGACGCCAAAGAACACATTTGCAATAAATGTAATAAAGCGCTCGTAAATAATATCGCACTTCAGAAACATCTACGAATTCATGACAAGAGTTTCGTGCCGCTCAAGAAATATCAGTGCGACTTTTGTGGAAAAGCacgGTTATATGGGAACTACAAGAATATTGCTATAAAACCAGATCCTGGAGATTTTGAACCTCTGATAACTATAACAGAAATGCCGCCTAAGAAGAGTAAAAGATCGGCAGCGACTCCTCGTAAATTAGAGAATGTTATACAAAAGCTGATTAATCATTCTGATTCGGACGATGACGATTTAGATTTCGTCAAACAAAGATTAGCTAGTGATAAGACACCAAAGAGAGCGTATAGCAAAAGTGGCAGGAAAAAAACCACTCCTAAAAAAATCGGCAAACGCAAAAAGAGCACCAAGAAAGCTAGTGAAAAGGAAGAGGACGACGACGATGAAGAAGAGGACGAagatgatgataatgatgaagATTACAAGCcggagaaaaagaaaaaatctaaaagaaGTAAGGACGATGATAAAGAAGACAAAACCAAAGTGAAAATTGAGCCGATTGATTATGACAGCGATGAATACGTGAATCCATTTAATTATGGTTTTGATACCCCACAAGCGCCTGCCCGAAAGCGTAAAGCTTTTGCAAAACAGCAAACCGTTCCCACAAAAGCAGTTCCTACGAAATCGAAATGGGCATGCTTAATTTGCTTAGCCGATTTGCCGTCCAAAGAGGCTTTGATAACGCATTACGCAGGCCACAAAGACGATCCAATCAAGCAAGAGACGGCCGATATTCCGCCAGAACATTTACAAAGTATCGTGCCGCCAGATGTTAGTAGCAGTCCTGCGTTTTGTCACATTTGCGGGAAAGTATGCGATAGCgaaaggaaattaaaaaaacattcagaAGCGCACGTCGAAGAACAGTTCTATTGCGGCTATTGCAGTACTACTTTTGAAACCGCGTATGATTTTTCAATTCATTCGCGATCTCATACGATTGAATCGAAATTCCGTTGTGACATGTGCGATTTTGAAACCTTGTTTCCGAAGGCCCTGAAGGCGCACGTTCAACGACACGAAACCGATTTCAGATACAGATGCGAGGTGTGCAATAAAGGATTTTATTCGCACAATTGGTACGAGGAACACAAAAATTTCCACACGGGTGCAAAACCTTTCATTTGCGATATTTGCGATAAACCTTTCGCATACACCCGTTATTTGACAGCCCACAAGCGCAGCATGCATCCTGAAAGTTACAAAGATGAACCTATCATAAATGAATGCATCATCTGTCAGAAACGGTTTGCTCACAAAAAAAGTTTGATGCTTCATATGAAAGGACACACTGGCGAGAATTCGGTTCTATGTGACATTTGTGGAAAACGTTTGTCTAGCAACGAACACTTGAAATTCCATCGTAGAATTCACACCGGTTACAAACCTTATACGTGCGACGTGTGCAGTAAAGGGTTTGCTAAGAAATGTAACTTGACTCTGCATCTCAGAGTTCATTCCGGAGAGAAACCGTATATTTGCGACGTCTGTGGAAAATGTTTTTCGCAACGATCGACGCTTGTCATACATGAGCGTTATCACACAGGCGCAAGACCGTATACTTGTCATTTGTGTCATAAGGGTTTCGTCGCTAAAGGCGTTCTTAGTATTCATCTTAAAAGTTGTAACAGAAATACAATAATGGGGAGTTTGCTCGAATAG
- Protein Sequence
- MGDLYDKSQKKDPLIGENSNCKIKISTSITSLNKEHVKTELKSHLKTDQTAQIFPLEQNLVWGSEEKSISNFLYDYFVTQSNRTKLIQTKQENVNETENSVDESEIEKQSNRVARARNAKCVISFKEHGNIEDGSKLFKCSVCSKEFTRKRYLKRHILIHSGEKPFQCDACPARFNQKSNLLTHRKSQHSSSSSKNFACESCSHKFKTKQGLKLHEMTHLKKYSLFCDICSKGFFFRNTLEIHKRSVHSEKRIACDLCNKSFSTTILLNSHMRTHQNIAERTLYPCEMCDKKFLSKTALRNHIKVHTGQSNFVCETCGKELTSKQSLNDHTKLHLGLKPLTCETCGKCFSKRTTLRVHIQTHTGVKPYECKECGKRFTQSSSTNNTFNYLKNEARVTNDENGSVSNDNIKLELKEDLNGKIAKKMPGNIFRCTQCSKTFKSRSKLNSHRVSHSDIRPFKCPHCPKMFKRNYELNVHEQIHDIGKSFKCTVCSKIFKRKQLLNSHKKRHTEKYIVFCEKCSKGFYTKRELSNHMNSAHGAKEHICDKCSKSFVSDYSLQKHLRTHDDSFVPLKKYQCDYCGKSFVHKKSLRHHNKSHTGENSYICDICGKNLSSKKSLSDHLLVHSGIKPLKCEVCGKCFGKKTSLVVHLRTHTKDKPYECKECGKCYTQRSTLVIHMRYHSGERPYRCTACEKGFVSKYLLNAHQKSQHSISNITSITNNTTIFIKEEHVTVEDNDSIIMNSYENMKVELEECSWEIKFPETSRKVFECGQCSKTFKYKSILMNHEASHSNVRPFKCSQCSKAFKRNYQLNAHEQIHGIGKIFECNVCSKVFKHERVLKFHKQRHSKEYTYFCEKCSKGFYRKCDLSNHMNSAHDAKEHICNKCNKALVNNIALQKHLRIHDKSFVPLKKYQCDFCGKARLYGNYKNIAIKPDPGDFEPLITITEMPPKKSKRSAATPRKLENVIQKLINHSDSDDDDLDFVKQRLASDKTPKRAYSKSGRKKTTPKKIGKRKKSTKKASEKEEDDDDEEEDEDDDNDEDYKPEKKKKSKRSKDDDKEDKTKVKIEPIDYDSDEYVNPFNYGFDTPQAPARKRKAFAKQQTVPTKAVPTKSKWACLICLADLPSKEALITHYAGHKDDPIKQETADIPPEHLQSIVPPDVSSSPAFCHICGKVCDSERKLKKHSEAHVEEQFYCGYCSTTFETAYDFSIHSRSHTIESKFRCDMCDFETLFPKALKAHVQRHETDFRYRCEVCNKGFYSHNWYEEHKNFHTGAKPFICDICDKPFAYTRYLTAHKRSMHPESYKDEPIINECIICQKRFAHKKSLMLHMKGHTGENSVLCDICGKRLSSNEHLKFHRRIHTGYKPYTCDVCSKGFAKKCNLTLHLRVHSGEKPYICDVCGKCFSQRSTLVIHERYHTGARPYTCHLCHKGFVAKGVLSIHLKSCNRNTIMGSLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -