Vnig012403.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2375423-2382666[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 1.6e-05 0.00045 21.1 6.3 1 23 207 229 207 229 0.99
2 27 0.00061 0.017 16.1 3.7 1 23 235 257 235 257 0.99
3 27 0.00042 0.012 16.6 4.4 1 23 263 285 263 285 0.99
4 27 0.001 0.028 15.4 4.0 1 23 291 313 291 313 0.99
5 27 0.0014 0.039 15.0 2.5 1 23 319 341 319 341 0.99
6 27 4.3e-06 0.00012 22.9 4.1 1 23 347 369 347 369 0.99
7 27 2.8e-06 7.6e-05 23.5 0.8 1 23 375 397 375 397 0.99
8 27 0.00038 0.01 16.8 1.4 1 23 403 425 403 425 0.96
9 27 0.002 0.054 14.5 5.0 1 23 431 453 431 453 0.99
10 27 4.2e-06 0.00011 22.9 3.4 1 23 459 481 459 481 0.99
11 27 8.9e-05 0.0025 18.8 3.0 1 20 487 506 487 509 0.95
12 27 0.00021 0.0058 17.6 5.6 1 23 671 693 671 693 0.99
13 27 5.3e-06 0.00015 22.6 5.4 1 23 699 721 699 721 0.99
14 27 7.8e-05 0.0021 18.9 7.3 1 23 727 749 727 749 0.99
15 27 5.7e-07 1.6e-05 25.7 3.4 1 23 755 777 755 777 0.99
16 27 0.0026 0.071 14.1 7.2 1 23 783 805 783 805 0.99
17 27 2.6e-05 0.0007 20.5 5.4 1 23 811 833 811 833 0.98
18 27 0.00011 0.0031 18.4 5.3 1 23 993 1015 993 1015 0.99
19 27 8.2e-07 2.3e-05 25.2 4.5 1 23 1021 1043 1021 1043 0.99
20 27 8.8e-06 0.00024 21.9 7.3 1 23 1049 1071 1049 1071 0.99
21 27 2.5e-06 6.9e-05 23.6 4.8 1 23 1077 1099 1077 1099 0.99
22 27 5.3e-05 0.0015 19.5 5.2 1 23 1105 1127 1105 1127 0.99
23 27 2.2e-05 0.00062 20.6 2.5 1 23 1133 1155 1133 1155 0.96
24 27 7.7e-08 2.1e-06 28.4 1.4 1 23 1161 1183 1161 1183 0.99
25 27 9.2e-05 0.0025 18.7 4.1 1 23 1189 1211 1189 1211 0.98
26 27 7.2e-05 0.002 19.0 2.3 1 23 1217 1239 1217 1239 0.98
27 27 0.00021 0.0058 17.6 3.6 1 23 1245 1267 1245 1267 0.98

Sequence Information

Coding Sequence
ATGTGCCGTTTATGTTTATCTAGTGATGAGACATTAATTGATATGTTCTCATTTTCATCACAACTAGAATGTTCTATTGCAAATGTTGTCACGAAATGTACATCCGTTCAGGTAGATAAACATAGCAAATTACCTACAACTATATGTGGACCTTGCTACATGCAACTCATCAAAACGCACAATTTCCAAATTCAGGCTCTTAAATCTGACAAAACTTTGCAGTTTTATCTGCAACGATTGCACGATGACGATAAACAAAGCATACTTCCAGATATTGACGGTAGTTCTTGCATTAAAACCAATGCTGCCAAACAGGGCAAGGAAGATAACAGTATGAATTGTGAAGAAATTAAAcctgattttaaatattgtgaaaCCGCCTATGAGGAACACGATTTTgctaatatagaaaataaagttgATCCATTAGAAACAAGATTATATACGGAATGGAACATTCATAATTCAAGCAAAGACACTACTTTTGATCCTAACTTGAATGTAAAGACTGAACCAATAATAAATGGCAATGAAACTGAAATATTAAATGATTTCGCTGTTAATCAGAAGAGCATAAAACTGGAAAAGGATGCATCCATTAATAAAATACTGACCTCATATCAGTgtgatatttgcaataaatgcTTTAGCAATTTAAATACATTAAGAAAACACCATCGCATACATACTGGCGACAAACGATATAAGTGTAGCTTTTGCAATATGAGTTTCAGATTTTTAAGCAATATGAACACTCACAAACGTGTGCATACAGATGAGAAACcatataagtgtgacgtttgtaataaatgctTTAGCATATCACTTTATTTGAGAAAACACAAAAGAGTACATTCTCTTGTGAAACCTTACACATGCGATGTATGTAGTAAGTCCTTTATGTCGTCGTGCTATTTAAATAGTCATAAACGTATACATTCGGGTGAGAAGCCATATCAATGCGAGGTTTGTGATAAGAATTTCGATTGCTTAGGTCAATTGAAATCTCACCAACGCtcacatactggtgagagaccatatcaatgtgatgtttgtaCTAAGAGTTTCAGAAATTTAAGCCATTTAAAATCACACAAGCGcgttcatactggtgagaagccatatcaatgtgatgtttgtGAGAAGTTTTTCAGCATTTCTGCTAATTTGAGAAGACACCagcgcgtacatactggtgagaaaccatatcagtgtgatattTGCAATAAGTGTTTCAGCGAATCAAGTATTTTGAGAAATCATCAAGCTGCACATACTagtgagaagccgtatcagtgtgacgtttgtaataaaagtttcGATTGCTTAGGTCATTTGAAATCTCATCAGCGTTCACATACTGGAGAGAGACCATATCAGTGTgaagtttgtaataagagtttcaggGACTTCGGTCATTTGAAAACTCATCGACGTGTACATACgggtgagaagccgtatcagtgtgacgtttgtaataaatgtttctccTATTTAAGCAGTTTAAACAGACATAGACCTTTACACTCGTCAGATGAGAAACATAGTGAATTGCCTGAAACTATATGTGAATGTTGTTACATGCAACTCATTAAAACGCAGAATTTTCAAAGACAGGCTATTAAATGTGATAAAACCCTGCAGTTGTATCTGAAACAATTGCAAGAAGACGATAAACAAAACATACTTGAAAGCTCAGAGATTCTTCCAGATATTGACGGGAGTTGTTGTATTGATACAAATGTTGCTAATCAAGACTGTAAAGATATAAAGCCTGATGTTCAACATAGCGAAAGCGGTTGTGAAGAATTTGGATTCAATATTGAAGAAAATAATGCGGATTGGGGTGTTCATAATTCTGGCAAAGACTCGGCTTTTAATCCTAACttgattgtaaaaaaagaacCAATAATAAATGGCAATGGTACCGAAATGTTAAATGATTTTGCGTTAagtcaaaagtatataaaatcGGAGAATGAAATATTCAGTGATAACATGGAATCGTCATATCAGTGTGGCGgctgtaataaatgtttcagcAATTCAGATATGATAAGAAAACACCAGTGTTCTCATAGTGGTGGGAGACTATATCGGTGTAACGTTTGTAGTAAGTGTTTCAGCAAATCCGATACTTTAAAGAAACACCAGCGcatacatactggcgagaaaccatatcagtgtgaaaAGTGCAGTAGGTGCTTTACTGTGTCGAGTCATTTGCGTCAACATATGTttacacatactggtgaaaaaccatatcagtgtgacatttgtactAAGTGTTTCAGAGACTCAGGTACTTTGAGAAGACATCAGCGCGTACATACTAGTGAGAAGCCATATAAATGTGACGAGTGTAATAAGTGTTTTACGTTAATAAACCATTTCAAAAGTCACCAACGtttacatactggtgagaggCCATATCATTGTGATATTTGCAAGAAAACTTACAGCAGATTAGATCATTTGACAACACATCAACGtgtgcatactgAGAAACATAGTGAATTGCCTACAACTATATGTGAGTCTTGTTACATGCAACTCATCAAAACGCAACATTTTCAAAGACAGGCTATTAAATCTGATAAAACCTTGCTGTTGTATCTGAAACAATTGCAAGAAGGCGATAAACAAAACATACTTGAAAGCTCAGAGATTCTTCCAGATATTGACGGGAGTTCTTGCATTGAAACCAATGTTGCTAATCAagactgtaaagaaataaagcCTGATGTTCAACATATCGAAAGCGGTTGTGAAGAATTTGGATTCAATATTGAAGAAAATAATGCGAAGTGGGGTGTTCATAATTCTGGCAAAGACTCGGCTTTTAATCCTAACTTGATTGTAAAAACAGAACCAATAATAAATGGCAATGGTACCGAAATATTAAATGATTTTGTGTTAAGTGAGAAGTATATAAAATCGGAGAATGAAATATTCAGTGATAATATAGAATCGTCATATCAGTGTAGCGtctgtaataaatgtttcagcAATTCAGATGTGTTAGTAAAACACCAGTGTTCTCATAGTGGTGGGAGATCATatcggtgtgacgtttgtagTAAGTGTTTCAGCAGATCCGATTCTTTAAAGAAACACCAGcgcatacatactggtgagaaaccatatcagtgtgaaaAGTGTAATAGGTGCTTTACGGTGTCGAGCCATTTGTATCAACATATgcgtacacatactggtgagaaaccgtatcagtgtgacatttgtactAAGTGTTTCAGAGACTCACGTACTTTGAGAAAACATCAAcgcatacatactggtgagaagccatatAAATGTGACGAGTGTAATAAGTGTTTTACGTTCATAAGTTATTTGAAAAGTCATCAGCGtttacatactggtgagaggCCATATCTTTGTGATATCTGTAAGAGAAGTTACAGCAGATTAGATCATTTGACAACTCATCAACGTGTACATACCGGTGAAAAgtcatatcagtgtgacgtatGTGATAAATTTTTTAACCGTTCAGCTAATTTGAGAAGACATCAGCGAGTACATACTGcagagaaaccgtatcagtgtgatgtttgtaataagtgtttcagctTTGCATCTGGGTTCAAAAGTCATTACCGCTTGcacactggtgagaaaccttatAATTGTGATGTGTGCAATAAGTGCTTCACGTCGTCGAgcattttaattgctcataGACGTACACATAcgggtgagaaaccgtatcagtgtgacgtttgtaataagcgtTTCACCCAGTTGCGCGCTTTAAATAGTCACACGCATAAACACTCGTCAGATGTTTAG
Protein Sequence
MCRLCLSSDETLIDMFSFSSQLECSIANVVTKCTSVQVDKHSKLPTTICGPCYMQLIKTHNFQIQALKSDKTLQFYLQRLHDDDKQSILPDIDGSSCIKTNAAKQGKEDNSMNCEEIKPDFKYCETAYEEHDFANIENKVDPLETRLYTEWNIHNSSKDTTFDPNLNVKTEPIINGNETEILNDFAVNQKSIKLEKDASINKILTSYQCDICNKCFSNLNTLRKHHRIHTGDKRYKCSFCNMSFRFLSNMNTHKRVHTDEKPYKCDVCNKCFSISLYLRKHKRVHSLVKPYTCDVCSKSFMSSCYLNSHKRIHSGEKPYQCEVCDKNFDCLGQLKSHQRSHTGERPYQCDVCTKSFRNLSHLKSHKRVHTGEKPYQCDVCEKFFSISANLRRHQRVHTGEKPYQCDICNKCFSESSILRNHQAAHTSEKPYQCDVCNKSFDCLGHLKSHQRSHTGERPYQCEVCNKSFRDFGHLKTHRRVHTGEKPYQCDVCNKCFSYLSSLNRHRPLHSSDEKHSELPETICECCYMQLIKTQNFQRQAIKCDKTLQLYLKQLQEDDKQNILESSEILPDIDGSCCIDTNVANQDCKDIKPDVQHSESGCEEFGFNIEENNADWGVHNSGKDSAFNPNLIVKKEPIINGNGTEMLNDFALSQKYIKSENEIFSDNMESSYQCGGCNKCFSNSDMIRKHQCSHSGGRLYRCNVCSKCFSKSDTLKKHQRIHTGEKPYQCEKCSRCFTVSSHLRQHMFTHTGEKPYQCDICTKCFRDSGTLRRHQRVHTSEKPYKCDECNKCFTLINHFKSHQRLHTGERPYHCDICKKTYSRLDHLTTHQRVHTEKHSELPTTICESCYMQLIKTQHFQRQAIKSDKTLLLYLKQLQEGDKQNILESSEILPDIDGSSCIETNVANQDCKEIKPDVQHIESGCEEFGFNIEENNAKWGVHNSGKDSAFNPNLIVKTEPIINGNGTEILNDFVLSEKYIKSENEIFSDNIESSYQCSVCNKCFSNSDVLVKHQCSHSGGRSYRCDVCSKCFSRSDSLKKHQRIHTGEKPYQCEKCNRCFTVSSHLYQHMRTHTGEKPYQCDICTKCFRDSRTLRKHQRIHTGEKPYKCDECNKCFTFISYLKSHQRLHTGERPYLCDICKRSYSRLDHLTTHQRVHTGEKSYQCDVCDKFFNRSANLRRHQRVHTAEKPYQCDVCNKCFSFASGFKSHYRLHTGEKPYNCDVCNKCFTSSSILIAHRRTHTGEKPYQCDVCNKRFTQLRALNSHTHKHSSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-