Vnig000906.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000002.1:4603398-4610198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.31 8.6 7.6 1.0 1 23 77 99 77 99 0.93 2 35 0.0013 0.035 15.1 1.0 5 23 110 129 107 129 0.91 3 35 0.023 0.63 11.2 0.4 3 23 138 158 136 158 0.97 4 35 0.038 1.1 10.5 1.8 2 23 165 187 164 188 0.92 5 35 0.0031 0.087 13.9 2.0 1 23 192 214 192 214 0.98 6 35 0.0011 0.032 15.3 4.1 1 23 224 246 224 246 0.98 7 35 2.3e-05 0.00065 20.6 0.8 1 23 252 274 252 274 0.98 8 35 0.00012 0.0034 18.3 2.5 2 23 281 302 280 302 0.96 9 35 1.1e-06 3e-05 24.8 2.2 1 23 308 330 308 330 0.97 10 35 0.00012 0.0034 18.3 0.5 1 21 336 356 336 357 0.96 11 35 0.00045 0.012 16.5 1.4 1 23 404 426 404 426 0.97 12 35 0.0009 0.025 15.6 2.4 1 23 432 454 432 454 0.97 13 35 0.00028 0.0078 17.2 4.0 1 23 459 481 459 481 0.98 14 35 0.0013 0.036 15.1 0.8 2 23 488 510 488 510 0.97 15 35 8.9e-05 0.0025 18.8 0.2 1 23 515 537 515 537 0.97 16 35 0.012 0.34 12.0 4.9 1 23 546 568 546 568 0.98 17 35 0.0046 0.13 13.4 0.6 1 23 575 597 575 597 0.96 18 35 1.6e-06 4.5e-05 24.2 0.9 1 23 603 625 603 625 0.98 19 35 1.1e-07 2.9e-06 27.9 1.3 1 23 631 653 631 653 0.98 20 35 0.48 13 7.0 0.6 1 23 659 685 659 685 0.92 21 35 0.022 0.62 11.2 0.5 1 23 690 712 690 712 0.98 22 35 0.057 1.6 9.9 1.4 1 23 721 744 721 744 0.97 23 35 0.00067 0.019 16.0 0.7 1 23 754 776 754 776 0.98 24 35 7e-06 0.00019 22.2 3.8 1 23 782 804 782 804 0.99 25 35 9.7e-07 2.7e-05 24.9 0.5 1 23 810 832 810 832 0.99 26 35 0.00021 0.0056 17.6 4.0 1 23 913 935 913 935 0.92 27 35 1.1e-05 0.00031 21.6 0.5 1 23 941 963 941 963 0.99 28 35 3.4e-05 0.00093 20.1 1.5 1 23 969 991 969 991 0.98 29 35 0.0022 0.061 14.4 0.4 2 23 998 1020 998 1020 0.96 30 35 0.00087 0.024 15.6 1.1 1 23 1025 1047 1025 1047 0.98 31 35 0.12 3.2 9.0 1.9 1 23 1056 1079 1056 1079 0.96 32 35 0.0094 0.26 12.4 0.9 1 23 1089 1111 1089 1111 0.96 33 35 1.8e-05 0.0005 20.9 3.0 1 23 1117 1139 1117 1139 0.98 34 35 2.6e-06 7.1e-05 23.6 2.3 1 23 1145 1167 1145 1167 0.98 35 35 0.00079 0.022 15.8 6.6 1 23 1173 1196 1173 1196 0.98
Sequence Information
- Coding Sequence
- ATGATGCTATATACTAGTTTCAATTGGAAATCACGTAAAAGATTCTGCACGAAaattgaaGAACCGATAGAAAACAGTGAAACAATTAGTGTTGATAAGAATAAGGGAACTTTTGGTTTTTCATTCGATGATAATGTTTCCAGAGAAAAAAACGATGACTCGTTACTTCACCTGACCGACGATGATTCTAATAGTTATTACTTGATTGTTGGTCCAACGAGTAAAGAGTTTGTTTGCAATATATGCAATTTACGTTTTGATACTATAGATCAATGTTCAAACCATATTCTTGACCATGACGAATATTTGAAGAAGAAAATATGCATACTTtgtaaaaagaattttaaacgGTCATCGTCTTTGAAGAAACACATCGAGTACATCCATTTGCGACAAGAAGATTTGTACGGTTGCGAATCGTGCGAAATATCGTTCGACACAAAACAACAGTTCGATGCTCATATAAAGAAACATAATTCTGGGTTATTGATTCGATGCGAATTTTGCAAAGAACCGTTTCGATCAAAAGAGGATTACATAAATCATAAAGAAAACAATCATCATCCAAAACAATTTAAGTGTTTGGCTTGTAATAAAACGTGTAAAAATAGTATAGACTTAGAAGAGCATGTGAAAACGCACACTCCTTCTTATGTAACACAAAAACCGTACCAGTGTTCTAAATGTGAAAGACGATTTGTACATTTGAAGAGTTTGCGCATTCATGAAAAACGTCACCTTACTGGCAATAGTTTTAAGTGTACGGAGTGTAATAAATCTCTGGCTACCAAAGCTAGTTTAAAAGATCATCTCAGACTGCACAGCGGAGAGAGACCTTGCAGATGCGATGTTTGCGGTCAAGGTTTTAGTAAGAAATCAACGTTGAGACTTCATCTTCAGAGCCACGCTGGCCTTAAACCACACGAGTGTCCTGAGTGTAACAAAAGATTCACTCAACGCAGTACACTCGTTATCCATATGAGATATCATTCTTTAGATAGACCTTTTCAATGTCCTCATTGTCAACGAAGCTACGTTAGCAATACGCTGCTTAAAGCACATCTGAAAGCTTGTATATTTGctagaaaaatGTCTGGATATGAAGCAATTCAAGAACTATGTAATTTTAGTGATCAAAAGACTTCggatattttgaataaaaataattgcacTAAAAACGCTTCGCAGAAAATATCTGAACCAAAAATTTTTCGTTGTACACAATGCCCTAAAGTTTATACGAAACAATATAGATTAAAAGATCACATAGTTTCTCATAATCCTGAGAGACCGTTTAAATGCAGTCTATGTCCAAAAGCATTCAACTTAAAATTCAGTCTTCACAATCATATGGAACTTCATGAAGGACATGCATTTCCTTGTACGACGTGCTTAAAGAAATTCAAAACGAAACGAGCActcaaaactcatcaaaaaagaCACCAGGAAAAATATGTAGCAAAATGCGAAGTCTGTTCGCGTGGATTTTTCACAAGAGGCGAACTAACAGTTCACATGAGTCGAAAACATGGCGGCGAAACATTTGATTGCGAAATCTGTGGCAGATCGTTCGCTTCAGTATACGATCTGAGATCCCATTCGTTGACTCATAAAAGTTTCGACGAACGACCGAAATTTAAGTGTTCGATTTGTGATAAAATTTACACCAGCATGAAATGTTTAAAACTGCACTCAAAGAAACACGACTCTGATGTTTCGAGATTCATTTGTCATATGTGCGGTAAACAAGTGACTAGCAAAGCTAGCTATGATGATCATATGGCATTGCATTCCGGCGAGAAAAGATTTATATGTTCAATTTGCGGAAAACGATTTAGCAAACGGTCGACTCTTACTGTTCACGCTCGAATGCATACTGGGGCGAAGCCCTACAATTGTAAAGAGTGCGGGAAAAGTTTTACTCAGTCGGGTACGCTTAAAATTCATATGCGAAATCATAGCGGCGAAAGACCTTATCAATGTGATCTCTGTAGTAGTAGATTTATAAGCGTGTATTCTAAAAGTGAACTCAAGTTACATATGAGTCGCGAACATGACGGCGAAAAGTTCAGTTGTGATGTTTGTAATCGGTTGTTCGCTACTATTCAAGATATGCGCGCGCACAAAAAAAGTCATCAAAGTATCGACGAACGAGAAAAGTTTCAATGCGATTCTTGTGAACGTAACTTTCTATCGAAACGTTCGCTAGAAAAACATAGAATCAAGGTCCATGGTAATGGAGAACCTTCTTCGATAGAATATATGTGCTATAAATGTGGTAAAAAGATTGCTTCAAAACAGAGTttagaaaatcatttaaaagtGCACGATGATCGAAAACTGTATACTTGTGAGACTTGCGGTAAAAGTTTTAATcataaaacttatttaataacGCATCGTAGAATACATACTGGTgtgaaaccgtatcagtgtagAGTTTGTGGAAGAGGTTTCACTCAGTCGGGCAGCTTAACAATCCACATGAGGAATCACAGCGGAGAACGACCGTATCAATGTCACCTTTGTACTAGCAGAAATGAACGCGTGATAAATGTCAAGACTGAAAAAGAGCAGAATCAATATTCTGTAGACACGGAATTATTACATATTGCTGCGTATCGTCTTTTACCAGAATCGCAGAAACAAAATGTttcgattgaaaaaaataataagaaacttgaaacagttgaaaatagatttgATAACGCGCAGTTGCAAATAAAGAACAATATGTATAAGTGCCCCGAATGTCCGAAAACATTTCAACAGaagcataaattaaaaaaacattcttatgCCCACACTACACTCAGACCTTTTAAATGTACCATTTGTTCGGCGgcattcaaacaaaaatacgaACTCAGAGTTCATGTTCGAGTCCATTCCAAAGAACGTAATTTCGTTTGTGATATTTGTACCAAAGCGTTCAAAAGTGACGATAATCTTAAAACGCATAAAAAACGTCATCTGAAACGGTTTGCCGCAACATGCCAAGTTTGTTCTAAAGGAGTGTATTCTAAGAGTGAATTGCAAGTGCACATGAGTCGTGAACATGACGGCAAAAAATACAGTTGCGACATTTGCGATAGGATATTTGTAAGCGTTCACGATATGCGATCGCATAGAAAAGTACATCAGAATATTGAAGATCGTATAAAATATCAGTGCAATGGATGCGAGAAAAATTTTCTGTGTAAAAGTTCCCTAGAACGACATGTCATAAAAGTTCATGGGAAGGGCGAACCGTCTTCGCTGGAATACATGTGTTATAAGTGCGGAAAACAAATCAGTTCAAAAACAAGCTTCGAGAATCATTTGGCTTTGCACGACGGTCGTAAATCGTTTACTTGCGAAACTTGCGGCAAAAGTTTCAATCATAAAGCTTATTTAATCACTCATAGTAGAATGCATACCGGAGCAAAACCTTATGAATGCAAGGAATGCAGTAAACGCTTCACCCAACGTAGTACTTTGACGATACATTTAAGAAACCATACGGGCGAGAAACCTTACAGTTGTCATTTGTGCGATAAGAAATTCATAAGCAAATGTATGTTGAATATGCATATGAAAAGCAAACATAAAATCATTAAAGCTTCAGTTGTCCCTATCAAAGAATAG
- Protein Sequence
- MMLYTSFNWKSRKRFCTKIEEPIENSETISVDKNKGTFGFSFDDNVSREKNDDSLLHLTDDDSNSYYLIVGPTSKEFVCNICNLRFDTIDQCSNHILDHDEYLKKKICILCKKNFKRSSSLKKHIEYIHLRQEDLYGCESCEISFDTKQQFDAHIKKHNSGLLIRCEFCKEPFRSKEDYINHKENNHHPKQFKCLACNKTCKNSIDLEEHVKTHTPSYVTQKPYQCSKCERRFVHLKSLRIHEKRHLTGNSFKCTECNKSLATKASLKDHLRLHSGERPCRCDVCGQGFSKKSTLRLHLQSHAGLKPHECPECNKRFTQRSTLVIHMRYHSLDRPFQCPHCQRSYVSNTLLKAHLKACIFARKMSGYEAIQELCNFSDQKTSDILNKNNCTKNASQKISEPKIFRCTQCPKVYTKQYRLKDHIVSHNPERPFKCSLCPKAFNLKFSLHNHMELHEGHAFPCTTCLKKFKTKRALKTHQKRHQEKYVAKCEVCSRGFFTRGELTVHMSRKHGGETFDCEICGRSFASVYDLRSHSLTHKSFDERPKFKCSICDKIYTSMKCLKLHSKKHDSDVSRFICHMCGKQVTSKASYDDHMALHSGEKRFICSICGKRFSKRSTLTVHARMHTGAKPYNCKECGKSFTQSGTLKIHMRNHSGERPYQCDLCSSRFISVYSKSELKLHMSREHDGEKFSCDVCNRLFATIQDMRAHKKSHQSIDEREKFQCDSCERNFLSKRSLEKHRIKVHGNGEPSSIEYMCYKCGKKIASKQSLENHLKVHDDRKLYTCETCGKSFNHKTYLITHRRIHTGVKPYQCRVCGRGFTQSGSLTIHMRNHSGERPYQCHLCTSRNERVINVKTEKEQNQYSVDTELLHIAAYRLLPESQKQNVSIEKNNKKLETVENRFDNAQLQIKNNMYKCPECPKTFQQKHKLKKHSYAHTTLRPFKCTICSAAFKQKYELRVHVRVHSKERNFVCDICTKAFKSDDNLKTHKKRHLKRFAATCQVCSKGVYSKSELQVHMSREHDGKKYSCDICDRIFVSVHDMRSHRKVHQNIEDRIKYQCNGCEKNFLCKSSLERHVIKVHGKGEPSSLEYMCYKCGKQISSKTSFENHLALHDGRKSFTCETCGKSFNHKAYLITHSRMHTGAKPYECKECSKRFTQRSTLTIHLRNHTGEKPYSCHLCDKKFISKCMLNMHMKSKHKIIKASVVPIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -