Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: Sall1
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:4687892-4692160[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.25 6.9 7.9 1.6 2 23 47 67 46 67 0.97

2 31 5.7e-05 0.0016 19.4 1.0 1 23 73 96 73 96 0.96

3 31 0.00017 0.0047 17.8 3.6 1 23 102 124 102 124 0.96

4 31 0.011 0.3 12.2 0.3 2 23 131 153 130 153 0.95

5 31 3.9e-05 0.0011 19.9 0.1 2 23 160 181 159 181 0.96

6 31 4.9e-07 1.3e-05 25.9 0.7 2 23 185 206 185 206 0.98

7 31 0.0011 0.03 15.3 2.7 2 23 216 238 215 238 0.95

8 31 0.0013 0.037 15.1 0.3 1 23 244 266 244 266 0.97

9 31 4.2e-07 1.2e-05 26.1 4.9 1 23 272 294 272 294 0.99

10 31 1.8e-06 5.1e-05 24.1 1.2 1 23 300 322 300 322 0.98

11 31 9.1 2.5e+02 3.0 0.1 1 9 328 336 328 341 0.88

12 31 0.0008 0.022 15.8 2.9 1 23 419 441 419 441 0.98

13 31 1.3e-05 0.00036 21.4 1.1 1 23 447 469 447 469 0.98

14 31 0.0011 0.031 15.3 1.9 1 23 475 497 475 497 0.98

15 31 0.0084 0.23 12.5 2.5 3 23 505 525 504 525 0.97

16 31 7.3e-07 2e-05 25.3 0.4 2 23 531 552 531 552 0.98

17 31 6.3e-06 0.00017 22.4 1.8 1 23 563 585 563 585 0.99

18 31 0.00022 0.0061 17.5 0.3 1 23 591 613 591 613 0.98

19 31 1.2e-05 0.00033 21.5 2.7 1 23 619 641 619 641 0.97

20 31 5.6e-05 0.0016 19.4 0.5 1 23 647 669 647 669 0.96

21 31 0.00015 0.0042 18.0 0.3 1 22 675 696 675 696 0.96

22 31 4e-05 0.0011 19.8 1.2 1 23 713 735 713 735 0.97

23 31 2.6e-05 0.00071 20.4 1.7 1 23 741 763 741 763 0.98

24 31 0.72 20 6.5 0.4 1 23 769 792 769 792 0.92

25 31 6.3e-05 0.0017 19.2 1.0 2 23 799 820 799 820 0.97

26 31 1.9e-06 5.2e-05 24.0 0.4 2 23 824 845 823 845 0.98

27 31 0.00054 0.015 16.3 2.3 1 23 854 877 854 877 0.96

28 31 0.0014 0.039 15.0 0.1 1 23 883 905 883 905 0.97

29 31 1.1e-05 0.00031 21.6 4.7 1 23 911 933 911 933 0.99

30 31 5.1e-06 0.00014 22.7 1.4 1 23 939 961 939 961 0.98

31 31 1.7e-05 0.00047 21.0 3.7 1 23 967 989 967 989 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.25	6.9	7.9	1.6	2	23	47	67	46	67	0.97
2	31	5.7e-05	0.0016	19.4	1.0	1	23	73	96	73	96	0.96
3	31	0.00017	0.0047	17.8	3.6	1	23	102	124	102	124	0.96
4	31	0.011	0.3	12.2	0.3	2	23	131	153	130	153	0.95
5	31	3.9e-05	0.0011	19.9	0.1	2	23	160	181	159	181	0.96
6	31	4.9e-07	1.3e-05	25.9	0.7	2	23	185	206	185	206	0.98
7	31	0.0011	0.03	15.3	2.7	2	23	216	238	215	238	0.95
8	31	0.0013	0.037	15.1	0.3	1	23	244	266	244	266	0.97
9	31	4.2e-07	1.2e-05	26.1	4.9	1	23	272	294	272	294	0.99
10	31	1.8e-06	5.1e-05	24.1	1.2	1	23	300	322	300	322	0.98
11	31	9.1	2.5e+02	3.0	0.1	1	9	328	336	328	341	0.88
12	31	0.0008	0.022	15.8	2.9	1	23	419	441	419	441	0.98
13	31	1.3e-05	0.00036	21.4	1.1	1	23	447	469	447	469	0.98
14	31	0.0011	0.031	15.3	1.9	1	23	475	497	475	497	0.98
15	31	0.0084	0.23	12.5	2.5	3	23	505	525	504	525	0.97
16	31	7.3e-07	2e-05	25.3	0.4	2	23	531	552	531	552	0.98
17	31	6.3e-06	0.00017	22.4	1.8	1	23	563	585	563	585	0.99
18	31	0.00022	0.0061	17.5	0.3	1	23	591	613	591	613	0.98
19	31	1.2e-05	0.00033	21.5	2.7	1	23	619	641	619	641	0.97
20	31	5.6e-05	0.0016	19.4	0.5	1	23	647	669	647	669	0.96
21	31	0.00015	0.0042	18.0	0.3	1	22	675	696	675	696	0.96
22	31	4e-05	0.0011	19.8	1.2	1	23	713	735	713	735	0.97
23	31	2.6e-05	0.00071	20.4	1.7	1	23	741	763	741	763	0.98
24	31	0.72	20	6.5	0.4	1	23	769	792	769	792	0.92
25	31	6.3e-05	0.0017	19.2	1.0	2	23	799	820	799	820	0.97
26	31	1.9e-06	5.2e-05	24.0	0.4	2	23	824	845	823	845	0.98
27	31	0.00054	0.015	16.3	2.3	1	23	854	877	854	877	0.96
28	31	0.0014	0.039	15.0	0.1	1	23	883	905	883	905	0.97
29	31	1.1e-05	0.00031	21.6	4.7	1	23	911	933	911	933	0.99
30	31	5.1e-06	0.00014	22.7	1.4	1	23	939	961	939	961	0.98
31	31	1.7e-05	0.00047	21.0	3.7	1	23	967	989	967	989	0.99

Sequence Information

Coding Sequence: ATGGGTTCTTTAAAGCCCGAATCAGCTCCGAATGACAAGAATGCTGTTTCTGATGACACTGTCACTAAACGAGTAAATCGAATAAGTGCGCGCAAATCGTCACGAAAAGACGTAACGCAAATCCGCTCGAAAAAGACCAAGTGTGAATTTTGTGATAGGTATTTTTCGgcttttaaaatgataattcaTCGCCGAACTCATACTAAGGAAAAACCGTTCACGTGTTCCTCTTGTAACAAATCGTTCGTAAGCAAAGGTCAGTTGAAATCTCACGTTTCGAGCGTTCATTCGGAAGAAAGGCCGTTCGCTTGCAACGTTTGCGGCAAAAAGTTTAAAGCCAAGCATCACTTGCAAAACCATCTGGGTAGTCATAATGGGGAAAAGGCACTAGTTTGTGATATTTGCGGGGAGAAGTTTCGATTGAAATTGACGCTTAGCACGCACGTTTTACGAAGACACAGCGAAAACTTCTCTATTGTATGCGAAATATGCGGTAAAGGTTTTAAAATGGCCGTCGACTTGAAAGCTCACATGTTTAAACATAACGGCGCGAAATGTGATATTTGCGGCAAGAGTTTCAGCTATGAGTACGGGTTAAAAAAACATATGCTGACCCACGATCCTAGTTACGATTTTACGGTTACGCAGTgccatttttgtaaaaagattTTAGTCAACAACAGTAGCTTAAAACGTCATATAAAAGATTTGCACGAGGACAAAGAGTCGTTCGTTTGCGATGTTTGCGGGAAAAACTTGAGTACCAAAAGagtattaaaattgcatttgcaGTTACACGAAGGTTTGAAACCGTTTAAATGTTCAGAATGCAATAAGTGTTTCAATTCAAAGAGTAATTTGACTGTTCATTTGCGTTCCCATACTGGGGCCAAGCCCTACGAGTGCCCGAAATGCAAGAAGCGTTTCACTCAGCGTAGTCCCCTCGTTGTTCATATGCGCTATCATACGGGAGAGAGGCCTTACAAGTGCCATCTCTGTACAAAAGCATTGCCGGAGCCAAATGCTGTCTGCCTCTCAGATCAGCAGAATTCTTTGGACGATGTAAAAAACCCCGACGATAATTTAGAAAAACGATTGTCTAGTAGGAAACAACATACTTACACTAGTTCTAATTTATCGAATGTTAAAATGAAAAGTTCTAGAAAAAATCGAACAAAATGCGAATTTTGCGATAAACTTTTAACACCGTTTAGAATGGAGCTACATGTTAGGTCCCACACCAAAGAGAAACCGTTTTCGTGTCTGACGTGCAATAAACTGTTTCAgaataaatatagtttaaacAATCACATGAAATTACATAAAGACGATGCGTATTTTCCGTGCGATCGGTGCGACAAATcgtttaaaacgaaaatatatCTGCTCAGGCATGTAAAAATACACACCGGTGCCAAAGATTACGTGTGCGAAATTTGCAATTACGCGTGCGCTCAAAAAAACACCCttaaaatacacaaacaaaGACATTCGAAAGACTTTTCGGTGTTTTGCGAATCGTGCGGTAAAGGTTTTCACAACTCGAAAGATTTGCTGTTGCATATGTTTAAGCATAGAATCGACAAACCGAAATGCGAAGTTTGCGGCAAATCGTACAGTTACGAAGCCGACTTAAAACGACACATTCGAACTCACGATCCGAATTACGCGAACAAATCGGTTCGGTATCAGTGCGAGTATTGCGAAAAGTCGTTTTGCAGTATCGGCAATTTGAATATTCATACGCGCGTTCATTTGTATCAAAGGTTGTTCGTTTGCGACGTATGCGGCAAGAGTTTAAATTCGCAGAGCGGTTTCGATTTGCACACGAGAACGCATTTAGGACTGAAACCGTTCGCCTGTTCCGTTTGCGGGAAGTGTTTTATAACGAAAAAGAATTTGCTGTTACATTCACGGACCCATACAGGCGAACGTCCTTACGAGTGCATCGAGTGCGGACGGAGATTCACGCAGCGTAGCAGTTTGGTCGTCCATCTTAGATATCATTCGGGCGAAAGACCCTATCCGTGTCTTATGTGCGAAAAAGCGTTCGTTACTAGAACACAGCTGAACTCACATATGAAAcGATCGGGTGCTAATAATGCAAGAGAAGATTCAGAGCAGAATGATAAGCCGTACGCTTGTACCGACTGTGGCTTATCGTTTCGTTACAATCATCTGCTGACTTCTCACTTGTCGGTACACAAAGACGACCGCCCTTTTGTCTGTGAGGTTTGCAAAAGATCGTTCAAAAGAAAAACCGGTTTACAAACTCACGAAAAAATGCATTCCGATTTGAAAAAGTTCGTTTGCAATATTTGCGGCGATAAATTTAGACTGAAAGCGATACTGGAGTCTCATAAATTGAGACGACACAACGAGGAATTTTCCGAAGTTTGCGAAACGTGCGGGAAACGTTTTAAAATCGTAAGCGATCTCAAGAAGCACATGTTCACTCACAGAGGATCAAAATGCGAAATTTGCGGAAAGCCTTATTCTTACGAATATGAACTGAAAAAGCACATGTTGACTCATAATCCGGACTATGATTTTTCGGTGCACCAGTGCGAGTTTTGCGGTAAAACGTTAGCCAATAACAGTAGTTTAAAGTATCATGTAAAGAACCAGCACGGCAATCGGAAATTGTTTATTTGTGATATTTGCGGTAAGAATTTGAACACTAAAGAGGGTCTGGATCTTCATTTGAAAGTGCATTTGGGTCTGAAACCGTTTAAATGTTCAGAGTGCCAGAAATGTTTTCGGTCGAGAAGCACGTTAGCGGTGCATACGAGGTCCCATACTGGGGCGAAGCCCTATGAATGTCCAGATTGTAAGAAGCGCTTTACGCAACGTAGCACTTTAGTTGTACACTCGAGATATCATAGTGGAGAACGACCCTATAGCTGTCATTTGTGTGAGAAAGCTTTTGTTACGAAAACTTTGTTAAAAACGCATCAGAAAACGCATTAA
Protein Sequence: MGSLKPESAPNDKNAVSDDTVTKRVNRISARKSSRKDVTQIRSKKTKCEFCDRYFSAFKMIIHRRTHTKEKPFTCSSCNKSFVSKGQLKSHVSSVHSEERPFACNVCGKKFKAKHHLQNHLGSHNGEKALVCDICGEKFRLKLTLSTHVLRRHSENFSIVCEICGKGFKMAVDLKAHMFKHNGAKCDICGKSFSYEYGLKKHMLTHDPSYDFTVTQCHFCKKILVNNSSLKRHIKDLHEDKESFVCDVCGKNLSTKRVLKLHLQLHEGLKPFKCSECNKCFNSKSNLTVHLRSHTGAKPYECPKCKKRFTQRSPLVVHMRYHTGERPYKCHLCTKALPEPNAVCLSDQQNSLDDVKNPDDNLEKRLSSRKQHTYTSSNLSNVKMKSSRKNRTKCEFCDKLLTPFRMELHVRSHTKEKPFSCLTCNKLFQNKYSLNNHMKLHKDDAYFPCDRCDKSFKTKIYLLRHVKIHTGAKDYVCEICNYACAQKNTLKIHKQRHSKDFSVFCESCGKGFHNSKDLLLHMFKHRIDKPKCEVCGKSYSYEADLKRHIRTHDPNYANKSVRYQCEYCEKSFCSIGNLNIHTRVHLYQRLFVCDVCGKSLNSQSGFDLHTRTHLGLKPFACSVCGKCFITKKNLLLHSRTHTGERPYECIECGRRFTQRSSLVVHLRYHSGERPYPCLMCEKAFVTRTQLNSHMKRSGANNAREDSEQNDKPYACTDCGLSFRYNHLLTSHLSVHKDDRPFVCEVCKRSFKRKTGLQTHEKMHSDLKKFVCNICGDKFRLKAILESHKLRRHNEEFSEVCETCGKRFKIVSDLKKHMFTHRGSKCEICGKPYSYEYELKKHMLTHNPDYDFSVHQCEFCGKTLANNSSLKYHVKNQHGNRKLFICDICGKNLNTKEGLDLHLKVHLGLKPFKCSECQKCFRSRSTLAVHTRSHTGAKPYECPDCKKRFTQRSTLVVHSRYHSGERPYSCHLCEKAFVTKTLLKTHQKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -