Vnig012369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:1750035-1752725[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.00073 0.02 15.9 1.6 3 23 138 158 137 158 0.97
2 26 1.8e-06 5e-05 24.1 2.4 1 23 164 186 164 186 0.99
3 26 7.2e-07 2e-05 25.3 2.4 1 23 192 214 192 214 0.98
4 26 0.0024 0.066 14.2 4.3 1 23 220 242 220 242 0.98
5 26 9.3e-06 0.00026 21.8 2.1 1 23 248 270 248 270 0.98
6 26 1.4e-05 0.00038 21.3 2.7 1 23 276 298 276 298 0.99
7 26 7.1e-07 2e-05 25.4 1.6 1 23 304 326 304 326 0.98
8 26 0.00037 0.01 16.8 0.6 1 23 332 354 332 354 0.98
9 26 3.3e-05 0.00092 20.1 6.2 1 23 360 382 360 382 0.99
10 26 6.3e-08 1.7e-06 28.7 2.6 1 23 388 410 388 410 0.99
11 26 0.0026 0.071 14.2 1.6 1 23 416 438 416 438 0.99
12 26 4.2e-07 1.1e-05 26.1 0.5 1 23 444 466 444 466 0.98
13 26 0.0051 0.14 13.2 0.6 1 23 472 494 472 494 0.99
14 26 3.3e-05 0.00092 20.1 6.2 1 23 500 522 500 522 0.99
15 26 4.4e-07 1.2e-05 26.0 3.3 1 23 528 550 528 550 0.99
16 26 3e-05 0.00082 20.2 3.9 1 23 556 578 556 578 0.99
17 26 7.4e-07 2e-05 25.3 1.6 1 23 584 606 584 606 0.98
18 26 0.0015 0.043 14.9 0.4 1 23 612 634 612 634 0.97
19 26 3.3e-05 0.00092 20.1 6.2 1 23 640 662 640 662 0.99
20 26 4.4e-07 1.2e-05 26.0 3.4 1 23 668 690 668 690 0.99
21 26 2.6e-06 7.1e-05 23.6 3.1 1 23 696 718 696 718 0.99
22 26 1.3e-06 3.5e-05 24.6 0.9 1 23 724 746 724 746 0.98
23 26 3.3e-05 0.00092 20.1 6.2 1 23 780 802 780 802 0.99
24 26 3e-07 8.2e-06 26.5 3.0 1 23 808 830 808 830 0.99
25 26 8.8e-06 0.00024 21.9 3.0 1 23 836 858 836 858 0.99
26 26 6.7e-07 1.8e-05 25.4 1.5 1 23 864 886 864 886 0.98

Sequence Information

Coding Sequence
ATGTTTAACATGGATGTCAACTGGGAAGAAAACCCGGCTGTGAATTGCAATTCAACAAACGAAAtgaataatacaatatttataaaaaccgaAATCAAAGACGAACCGACGGATGACGATTTTTTGCTTCCAATAGATTGTGCTGCTGATACAGTAGACGATAGTGACAAcgtaaaatacgaaataaaacaCGACCCCTTGGATGATAATTCTTCAATTTTAACAGAATGTATTAATGACACTATAGACGCTTCATCTTACGGCGACATCAGTAAAATCAGTTGGGAAGACATAACAAACATAGACCACATATCTGCTGGTGATCGAGTAAAAACTTCGTCTTCGGATGATAACATTGAAGATAACATCATTGATAAATCATCAATATTGAGTGATCAGAAACCAAACcattgtgacgtttgtaataagagtttcccTGATCTGCAAACTTTAAATTTGCACAAACGGATACATACATGTGACAATCCTtatcagtgtgatgtttgtTTCAAGGTTTTTACTCAATTATACAATTTAAACAATCACAAAcgaacacatactggtgagaaaccgtatcaatgtgatgtttgtaataagcaTTTCACAGATCCTGGCAATTTAAGGAGACACAAACGattacatactggcgagaaaccgtatcaatgtacCGTTTGTGATAAGCAGTTCTTTCAATTAAGTAATTTAAACTGTCACAAAcgaatacatactggtgagaaaccgtatcaatgtgatgtttgtaataagcaTTTTACAGATCCTGGAAATTTTAGTAGACACAATAGAATACATTCTGCTGAGAGACCGTTTCAATGTGGCGTTTGTGAAAAGAATTTTACTCAATTAGGTCATTTAAATAATCACAAAcgaacacatactggtgagaaaccgtatcagtgtgaagTTTGTAATAAGCATTTCACTGATCCTGCCAATCTAAGGCGACACAATCGAATACATTCTGATAAGAAACCTTAccaatgtgatgtttgtaaaaagGATTTTATTGATCTTCGTACTTTAAACATGCACAGCCGtatacataccggtgagaaaccgtataagTGTGACGTATGCAATAAGCATTTTACTCAATTAGTCCATTTAAACAATCACAAACGAACacacactggtgagaaaccgtatcaatgtgacgattgtaataagtgtttcactgatcCTGGTAATTTAAGGAGACATAAACGAATACATTCtggcgagaaaccgtatcaatgtgattTTTGTAATAAGCAGTTCCTTCAACTAGTTAATTTGAACAGTCACAAAcgaatacatactggtgagaaaccgtatcaatgtgatgtttgtaataagaatTTCACTGATCCTGCCAATCTAAGGCGACATAATCGAATACATTCTGATAAGAAACCTTAccaatgtgatgtttgtaaaaagGATTTAATTGATCTTCGTACTTTAAACATGCACAGCCGGacacataccggtgagaaaccgtataagTGTGACGTATGCAATAAGCATTTTACTCAATTAGTCCATTTAAACAATCACAAACGAACCcacactggtgagaaaccgtatcaatgtgatgTATGtgataagtgtttcactgatcGTGCCAATTTGAGCAGACACAAACGAATGCATTCTGCTGAGAGACCGtttcaatgtgacgtttgtgaaaagAATTTTACTCAATTTGGTCATTTAAATAATCACAAACGaacacatactggcgagaaaccgtatcaatgtgatgtttgtaataagcaTTTCACTGATCCTGCTAATCTAAGGCGACATAATCGAATACATTCTGATAAGAAACCTtatcaatgtgatgtttgtaaaaagGATTTTATTGATCTTCGTACTTTAAATATGCACAGCCTGATTCATACCGATGAGCAACCGTATAAGTGTGACGTATGCAATAAGCATTTCACTCAATTAGTCCATTTAAACAATCACAAACGAACacacactggtgagaaaccgtatcaatgtgatgtttgtgataagtgtttcactgatcGTGGCAATTTGAGCAGACACAAACGAATGCATTCTGCTGAGAGACCGtttcaatgtgacgtttgcgaCAAGAATTTTACTCAATTAGGTCATTTAAATAACCACAAAcgaacacatactggtgagaaaccgtatcaatgtgatgtttgtaataagcaTTTCGCTGATCCTGCCAATCTAAGGCGACACAATCGAATACATTCTGATAAGAAACCTTACCAATATGATGTTAGTAAAGAGGATTTAATTGATCTTCGTGCTTTAAACATGCACAGCCTGagacataccggtgagaaaccgtataagTGTGACGTATGCAATAAGCATTTTACTCAATTAGTCCATTTAAACAATCACAAACGAACacacactggtgagaaaccgtatcaatgtgatgtttgtgataagtgtttcactgataGTGGCAATTTGAGCAGACACAAGCGAATGCATTCTGCTGAGAGGCCGtttcaatgtgacgtttgtgaaaagAATTTTACTCAATTAGGTCATTTAAATAATCACAAAcgaacacatactggtgagaaaccgtatcaatgtgatgtttgtaataagcatttcagtgaTCCTGCCAATCTAAGACGACACAATCGAATACATTCTGATAAGAAACCTTACCAATGTGATATTTGA
Protein Sequence
MFNMDVNWEENPAVNCNSTNEMNNTIFIKTEIKDEPTDDDFLLPIDCAADTVDDSDNVKYEIKHDPLDDNSSILTECINDTIDASSYGDISKISWEDITNIDHISAGDRVKTSSSDDNIEDNIIDKSSILSDQKPNHCDVCNKSFPDLQTLNLHKRIHTCDNPYQCDVCFKVFTQLYNLNNHKRTHTGEKPYQCDVCNKHFTDPGNLRRHKRLHTGEKPYQCTVCDKQFFQLSNLNCHKRIHTGEKPYQCDVCNKHFTDPGNFSRHNRIHSAERPFQCGVCEKNFTQLGHLNNHKRTHTGEKPYQCEVCNKHFTDPANLRRHNRIHSDKKPYQCDVCKKDFIDLRTLNMHSRIHTGEKPYKCDVCNKHFTQLVHLNNHKRTHTGEKPYQCDDCNKCFTDPGNLRRHKRIHSGEKPYQCDFCNKQFLQLVNLNSHKRIHTGEKPYQCDVCNKNFTDPANLRRHNRIHSDKKPYQCDVCKKDLIDLRTLNMHSRTHTGEKPYKCDVCNKHFTQLVHLNNHKRTHTGEKPYQCDVCDKCFTDRANLSRHKRMHSAERPFQCDVCEKNFTQFGHLNNHKRTHTGEKPYQCDVCNKHFTDPANLRRHNRIHSDKKPYQCDVCKKDFIDLRTLNMHSLIHTDEQPYKCDVCNKHFTQLVHLNNHKRTHTGEKPYQCDVCDKCFTDRGNLSRHKRMHSAERPFQCDVCDKNFTQLGHLNNHKRTHTGEKPYQCDVCNKHFADPANLRRHNRIHSDKKPYQYDVSKEDLIDLRALNMHSLRHTGEKPYKCDVCNKHFTQLVHLNNHKRTHTGEKPYQCDVCDKCFTDSGNLSRHKRMHSAERPFQCDVCEKNFTQLGHLNNHKRTHTGEKPYQCDVCNKHFSDPANLRRHNRIHSDKKPYQCDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-