Vnig012336.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:1082833-1100084[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 1.7e-05 0.00048 21.0 1.3 1 23 207 229 207 229 0.99
2 29 0.0029 0.081 14.0 1.4 1 23 235 256 235 256 0.98
3 29 0.0059 0.16 13.0 4.0 1 17 262 278 262 279 0.95
4 29 2.9e-05 0.0008 20.3 2.7 1 23 432 454 432 454 0.98
5 29 0.0013 0.037 15.0 7.9 1 23 460 482 460 482 0.98
6 29 1.3e-05 0.00035 21.4 3.6 1 23 488 510 488 510 0.99
7 29 3.2e-07 8.8e-06 26.4 0.8 1 23 787 809 787 809 0.99
8 29 0.00019 0.0053 17.7 5.7 1 23 815 837 815 837 0.97
9 29 4.1e-07 1.1e-05 26.1 0.6 1 23 843 865 843 865 0.99
10 29 0.00039 0.011 16.7 0.5 1 23 871 893 871 893 0.98
11 29 9.6e-06 0.00026 21.8 3.1 1 23 899 921 899 921 0.98
12 29 3.9e-05 0.0011 19.9 3.6 1 23 1091 1113 1091 1113 0.97
13 29 2.7e-05 0.00075 20.4 1.1 1 23 1119 1141 1119 1141 0.99
14 29 1.7e-06 4.6e-05 24.2 1.6 2 23 1148 1169 1147 1169 0.97
15 29 3e-07 8.2e-06 26.5 1.0 1 23 1175 1197 1175 1197 0.99
16 29 5e-05 0.0014 19.5 4.3 1 23 1203 1225 1203 1225 0.99
17 29 3e-06 8.3e-05 23.4 2.3 1 23 1231 1253 1231 1253 0.99
18 29 0.00026 0.007 17.3 5.5 1 23 1259 1281 1259 1281 0.99
19 29 1.1e-05 0.00029 21.7 4.9 2 23 1288 1309 1287 1309 0.97
20 29 3.5e-06 9.6e-05 23.2 3.4 1 23 1315 1337 1315 1337 0.99
21 29 3.4e-05 0.00093 20.1 2.2 1 23 1343 1365 1343 1365 0.99
22 29 1.2e-05 0.00034 21.5 2.4 1 23 1800 1822 1800 1822 0.99
23 29 0.00066 0.018 16.0 1.4 1 23 1828 1850 1828 1850 0.99
24 29 1.6e-05 0.00045 21.1 3.8 1 23 1856 1878 1856 1878 0.97
25 29 1.9e-06 5.2e-05 24.0 0.9 1 23 1884 1906 1884 1906 0.99
26 29 1.5e-05 0.00041 21.2 0.9 1 23 1912 1934 1912 1934 0.99
27 29 9e-06 0.00025 21.9 1.3 1 23 1940 1962 1940 1962 0.99
28 29 6.5e-06 0.00018 22.3 1.8 1 23 1968 1990 1968 1990 0.99
29 29 3.3e-05 0.00092 20.1 6.1 1 23 1996 2018 1996 2018 0.97

Sequence Information

Coding Sequence
ATGGACGTCAATGGAAAAGAAAGACTTCCTGTGaattttaaagtagaaaacaaaattaaagaagaaatatCTTTAGAATGTGAAATTAAAAACGAACCGATGGATGATAATGCATTGTTTCCAGCTGACTATACTGATGATGTTAAGAAAATCAGCTATGAAGACTCAAAAGTCGATGCGGGCGACACAAAAGTAGGTTTAGACGTGGATTTCAACTGGAAAGAAATAGAATCAGTTACTTTTGATTCAGCAAATGATATTAACGAAACAAAgtctttaaatttcaaaatcaaaaatgaacCGATGGATGATAActcattaattttaacaaaatatgttcATGACCCTTTAAATTCCTTATCTAATGCTGATGTGAGAGGAATAAGCTGCGAAGATACAAACGCAGCTATTGGTCACCCATCGGGCAACTTTTCGAATTTGTGTTCTACTGAGATGAcagaatattttgataaatgtaAAGAAGAAACTAAAAGTAGTATCTCAGTAGATGATGAGAAATGTGTTAAGccaactaaaaaaaaCAGTTTAGATATTCACAAACGTACACACGCTGGCGCTTTCCCAAGACACAAACACACGCATACTGGTGAGACACCATATcggtgtgacgtttgtgaaaagCATTTCAGTGACCCTAGCAGTTTGATAGGGCATAAACGCACTCACACTGATGAGAAAcgatatcagtgtgacgtttgtaaaaagtacTTTAATACACTAGATTTACAGAAGCACATTCGTGTTCATACTGAGgaaaaaccataccagtgtgaatTTTGTGAAAAGTGCTTTTCTAGATCATCAAATTTAAAGAACGAATTGATCGCTAAATTTGTCCGAGTTAATTATGCTAATGATACAATAGATGGTGCTAAGAAACTCAGCTGTGGAAACTCAAAAATCGGTGTGGACGCGACGAAAGTAGTATTAGACATGGATTTCAACCGAAAACAGACAGGATCTGCCACTTTAAATTCAACACGCGACATTAATGAAGGAATGATTTTAAAATCCGAAATAAAGAAAGAACCGAAAGATGataattctatatttttaatagaatatgTTGAAAACAGTGAACAAGCTTCATCAAATGGCGACCGCAGTAAAATCACCTACGGAGAAACCATTGCAGATATTGATTATGCATCGGGGAACTTTTCGAATTTTTGTTCTGTTGAGTTAACagaatattttgataaacataAAGAGGAAATCAAAACTAGTACCTCAGTAAATAATGAGGAGCGTGAAAAActaactaaaaaaaagtatccgTGTGACGTTTGTCAAAAGTCGTTCTCAAAGTCATGTAATTTGATTgttcacaaacgtacacatactggtgagaaaccacaccagtgtgatatttgtaaaatgaatttttgtcACCGTGGCAATCTCATAAGACACAAACGTACGCATACTGGCGAAAAAcgatatcaatgtgacgtttgtcaaAAAAGTTACAGTCGAACAAGTcatttaataaaacacaaacGTGTCCATACTGCTGGTACACTATATCCGAGTAACGTTCGTGAAAAGTCTTTCTCCGGCGATGATATTGTAAATTCTTCATCTTACGGCGACAACAGTGATAACTACGAAAAGATAAAGGTGGATATTGGTTCTGCTTTTGGAGATGTCGCGAATTTTTGTTCTGCTGAGTTATCAGAATATTCTAATAAATGTGAAGAGAACAAAAGTGTTGGGTTACAatcaaagaataataaaaaaacaaACATGAACATCAACGGGGAAGAAAATTTTTCTGTGAATTTAAATGCTGGAAACAAAatgaataatgaaatatttttaaaatccgaaatcaaagACGAACCAATCGATGATAGTGCATTGTTCCCAGTTGATTATGCTAATGATACAACAGATGATgctaaaaaaatcaactgtgaAGACTCAAAAATGGATGTGGCCGACACGAAAGTAGATTTAGACATGGATTTCAATTGGAAACAGACAGGATCTGCTACTTTTAATTCAGCACAGGAAATTAAcgaagaaatgtttttaaaatccgaaataAAGAAAGAACCGAAGGATGCTAATTCCATATTTTTAACAGAATATGTTGAAACCACAATACACGCTTCATCTAATGGTGACCGCAGTAAAATCACCTGCGAAGAAACAAACTCATCGGGGAACTTCTCGAATCTTCATTCTGCTGAGCTAACAGAATATATTGATAAATATAAAGAGAAGATCAAAAGTAGTAtctcaacaaattataaaaaacgtgaaaaaataactaaaaaaagtCGAACAAGCAATTTTATAAGACACAAACGTGTACATACTGGTGATACACCATATCAGTGTAACGTTTGTGAAAAGTCTTTCTCAGACTCGGGCAATTTAAATgttcacaaacgtacacatactggcGAAAAACCGCATCACTGTGAGATTTGTAAAAAGAATTTCAGTCAGGCAAGCAATTTCGCAAGACACAAACGTATGCATACTGGTGATacaccatatcagtgtgacgtttgtgaaaagTCTTTCTCCGACTCAGGTAATTTAAATgttcacaaacgtacacatactggcGAAAAGCCtcatcagtgtgacgtttgtcaaAAGAGTTTCAATCAAGCAGGCGATGTTATAATCCACaaacgtatacatactggtgagaaaccatacgaGTGTGAAGATTGTAAGAAATGTTTTGCTCGATCAGTGGATTTAAAGAGACACAGTCGCTCGCACAGagCTGACTATGCAGATTATACAGTAGATGATGCTGAGAAAATCAGATGTGAAGACTCAAAAATCGAAGTCGGCGACACGAAAGTAGGTTTAGACGTGGAGTTCAATTGGAGAGAAACAGGATCTGCTacttttaattcattaaatgaacgaatttctttaaaatccgaaatcaaaAATGAACCGATGGTTGATAACTCATTCACATTTTTACCAAAACATGTTGATGATACTGTAAACGGTACGTCTAACGGCGACGTCAGTAAAGTTAGTTGCGAAGACGCAAAAACAGATCAAACATCTAGAAACTTCTCGAATCTTTGTTTTGCTAAGGTAACAGAATATTCTGATAAAtgtaaacaagaaaataatagtAGAAACTCATTAAATTATGAGAAACTTGAAAAaccaactgaaaaaaaatatctggatGACGTGTGTGAAAAGTCTTTGTCATATTcagtaaaattaaatgttccaaAGCGTATACATACCGGTGAAAAACCacatcaatgtgacgtttgtaaaaagcgTTTCACTCAGTCAGGCAGTTTAACGAGACACAAACGTGCGCATACCGATGATACGCCGTATAAATGTGACGTCTGCGGAAATTTTTTCTCCAACTCAAACGatttaaatattcacaaacGTACCCATAGTGGCGAAAAACCGcttcaatgtgacgtttgtgataAGCGTTTTACCCAATCAGGCAGTTTAACAAGACACAAACGAACGCATACCGGAGATacaccgtatcagtgtgacgtctGTGGAAAGTTTTTCACCAACTCTAGTGATTTAAGTGCTCACAAACGTACGCACACTGGCGAAAAGCCAtttcaatgtgacgtttgtaataagtgtttcagccAATCAAGCAGTTTATCAGGACACAAACGTAAGCATACCGGTGATAcgccataccagtgtgacgtttgtggaAAGTCTTTCATTaattcattcaaattaaaaactCACAAACGAacgcatactggtgagaaaccgtatgagtgtgacgtttgtgaaaagTCTTTTTCACATTTCTGCAATTTAAATGTTCACAAACGTACGCATACTGGCGAAAAACCGCTTCAGTGTGacttttgtaataagtgttttagCCAATCAAGCAGTTTAATAAGACACAAACGTACGCATACCGGCGATacaccatatcagtgtgacgtctGTGGAAAGTTCTTCTCCAATTCATGCGATTTAAAGGCTCACAAACGTACacacactggtgagaaaccgtataagtgtgacatttgtaaaatgaGTTTCATTACAACAAGCAGTTTAATAAAGCACAAACGTAAACACATTGGtaagaaaccatatcagtgctCCGTTTGTAAAAAATATGCCGAATTTCATCTGCCAGCTCTGTTTCGACCTGAAGAGAATTTGTCAGATGCAAATATTAGTCAGACAAAATACAGCAACGCTATCACACTGAAATATCAGCTCGTCTTAGAGATGAACATCAACtgggaaaaaaaattttctatgGATTTCAATGCTCAGGACAAAAtgattaatgaaatatttttaaaatccgaaatcGAAGACGAGTCGATGGATGGTAATGCATTGTTTCCAGATGTGTATGCTGATGGTGCAGTAGATGATGTTAAGAAAATTAGTTATAAAGACTCAAAATTCGATGTGTGCGATAGTAAATTAGGTATAAAAATGGAAATCAACTCGAAAGAGACAGGGTCCGCcacttttatttcaacaaacgaaatgaACAAAGTAATGCCTTTAAAATCCCAAATAAAAAGTGAACCAGTGGATGATAGTTCATTAGCAATAACAGAATATAATGATAATACTGTTTCATCTAACGGTGGTGTCAGTAAAGTAAACTGCGAAAGCTCCGAAGAAGATTTCGGTCCTACATCAGAGAACTTCTCGAATTTTCGTTCTCCTGAGATAATATGCCGAATTTCAACTGCCAATAATGTTTCAACAGAAGAGAATTTGTCACTTACAGATGCAAATATCGGTCTGACAGAATACAGCGATGCTGTCACCCTGAAGTGTAAATCTCTTGAACTTCAACACATCTTAGAGATGGATATCAACTGGGATAAAAAATTTTCTGTGAATTTTAATGCTCAGAACAAAATgatcaatgaaatatttttaaaaaccgaagTCAAAGAGCCGATGGATGATAGTGTATTGTTTCCAGCAGTCTACTCTGATGATGCAGGAGATATTGCTAAGAACATTAGCTATGAAGATTCAAATTTCGATGTGTGCGATAGTAAATTAGGTATAGACATGAAAATCAACTGGAAAGAAACAGGATGCGCTAGTTTTGATTCGACGAACGAAATTAATGAAGAAATACCGTTAAAATCAGAAATAAAATGTGAACCAATGGATGATAATACATTAATAACAACAGAATATAATgataacattgtttcatctaaCGGTGAAGTCAGTAAAATGAAGTGCGAAAACTCGAAAGCAGATTTTGGTCACACATCGGAGAATATGTCTAATTTTCGTTCTGCTGAAGTTATAGACTATTTTGATAATTGTAAAGATGGAAATAACAGTGGAATCTCAGCAAATTAtgagaaaaatcaaaaattaactgaaaaaaaatatcagtgtGACGTGTGTAAAAAGTTTTTCTCAAATTCAGGCAACTATAATGTTCACAAACGTACGCATACTGGCGAGAGACCGTATAAGTGTGACCTTTGTGAAATGAGTttcgttacaataaattatttaatgaagCACACACGTAAGCATATTGATAACAAATCATATCAGTGCGGCGTTTGTAAAAAGCACTTCTCTAAttcatcaaatttaaaaaagcataatcgtgcacatactggtgaaaaaccatacgagtgtgacgtttgtaaaaagtccTTTTCTCGATCAGATGATTTAAATATTCACAATCGTACGCACACTGGCgaaaaaccgtatcaatgtgacgtttgtgaaaaaaaattcagtcGCCCGGACAATTTCGTTGGACATAAACGTACGCATACTGGTGATatgccatatcagtgtgacgtttgtgacAAGTATTTCTCAAAGACTGGCAATTTAAATGCACACAAACGAACACATACCGGCgaaaaaccgtatcaatgtgatgTGTGTGAAAAGTTTTTCTCTTACTCTAACAATTTAAATGCTCAtaaacgtacacatactggtgaaaaaccgcATCATTGTGATATTTGTGAAAAGAGTTTCAGTCGGAAAAATGCTTTAACAAAACACAGGCGTACGCATTCTGCTGAAAAtctcataatataa
Protein Sequence
MDVNGKERLPVNFKVENKIKEEISLECEIKNEPMDDNALFPADYTDDVKKISYEDSKVDAGDTKVGLDVDFNWKEIESVTFDSANDINETKSLNFKIKNEPMDDNSLILTKYVHDPLNSLSNADVRGISCEDTNAAIGHPSGNFSNLCSTEMTEYFDKCKEETKSSISVDDEKCVKPTKKNSLDIHKRTHAGAFPRHKHTHTGETPYRCDVCEKHFSDPSSLIGHKRTHTDEKRYQCDVCKKYFNTLDLQKHIRVHTEEKPYQCEFCEKCFSRSSNLKNELIAKFVRVNYANDTIDGAKKLSCGNSKIGVDATKVVLDMDFNRKQTGSATLNSTRDINEGMILKSEIKKEPKDDNSIFLIEYVENSEQASSNGDRSKITYGETIADIDYASGNFSNFCSVELTEYFDKHKEEIKTSTSVNNEEREKLTKKKYPCDVCQKSFSKSCNLIVHKRTHTGEKPHQCDICKMNFCHRGNLIRHKRTHTGEKRYQCDVCQKSYSRTSHLIKHKRVHTAGTLYPSNVREKSFSGDDIVNSSSYGDNSDNYEKIKVDIGSAFGDVANFCSAELSEYSNKCEENKSVGLQSKNNKKTNMNINGEENFSVNLNAGNKMNNEIFLKSEIKDEPIDDSALFPVDYANDTTDDAKKINCEDSKMDVADTKVDLDMDFNWKQTGSATFNSAQEINEEMFLKSEIKKEPKDANSIFLTEYVETTIHASSNGDRSKITCEETNSSGNFSNLHSAELTEYIDKYKEKIKSSISTNYKKREKITKKSRTSNFIRHKRVHTGDTPYQCNVCEKSFSDSGNLNVHKRTHTGEKPHHCEICKKNFSQASNFARHKRMHTGDTPYQCDVCEKSFSDSGNLNVHKRTHTGEKPHQCDVCQKSFNQAGDVIIHKRIHTGEKPYECEDCKKCFARSVDLKRHSRSHRADYADYTVDDAEKIRCEDSKIEVGDTKVGLDVEFNWRETGSATFNSLNERISLKSEIKNEPMVDNSFTFLPKHVDDTVNGTSNGDVSKVSCEDAKTDQTSRNFSNLCFAKVTEYSDKCKQENNSRNSLNYEKLEKPTEKKYLDDVCEKSLSYSVKLNVPKRIHTGEKPHQCDVCKKRFTQSGSLTRHKRAHTDDTPYKCDVCGNFFSNSNDLNIHKRTHSGEKPLQCDVCDKRFTQSGSLTRHKRTHTGDTPYQCDVCGKFFTNSSDLSAHKRTHTGEKPFQCDVCNKCFSQSSSLSGHKRKHTGDTPYQCDVCGKSFINSFKLKTHKRTHTGEKPYECDVCEKSFSHFCNLNVHKRTHTGEKPLQCDFCNKCFSQSSSLIRHKRTHTGDTPYQCDVCGKFFSNSCDLKAHKRTHTGEKPYKCDICKMSFITTSSLIKHKRKHIGKKPYQCSVCKKYAEFHLPALFRPEENLSDANISQTKYSNAITLKYQLVLEMNINWEKKFSMDFNAQDKMINEIFLKSEIEDESMDGNALFPDVYADGAVDDVKKISYKDSKFDVCDSKLGIKMEINSKETGSATFISTNEMNKVMPLKSQIKSEPVDDSSLAITEYNDNTVSSNGGVSKVNCESSEEDFGPTSENFSNFRSPEIICRISTANNVSTEENLSLTDANIGLTEYSDAVTLKCKSLELQHILEMDINWDKKFSVNFNAQNKMINEIFLKTEVKEPMDDSVLFPAVYSDDAGDIAKNISYEDSNFDVCDSKLGIDMKINWKETGCASFDSTNEINEEIPLKSEIKCEPMDDNTLITTEYNDNIVSSNGEVSKMKCENSKADFGHTSENMSNFRSAEVIDYFDNCKDGNNSGISANYEKNQKLTEKKYQCDVCKKFFSNSGNYNVHKRTHTGERPYKCDLCEMSFVTINYLMKHTRKHIDNKSYQCGVCKKHFSNSSNLKKHNRAHTGEKPYECDVCKKSFSRSDDLNIHNRTHTGEKPYQCDVCEKKFSRPDNFVGHKRTHTGDMPYQCDVCDKYFSKTGNLNAHKRTHTGEKPYQCDVCEKFFSYSNNLNAHKRTHTGEKPHHCDICEKSFSRKNALTKHRRTHSAENLII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-