Vnig018928.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- rcor2
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000082.1:1424871-1447931[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-09 3.3e-06 27.7 0.0 3 46 130 173 128 173 0.97 2 2 4.3e-15 5.3e-12 46.2 0.0 3 46 380 423 378 423 0.97
Sequence Information
- Coding Sequence
- ATGGTATTGGCtgaaaaaaacaatgaaaatgccCGAAATGGGCGAAGATCTCGGGGGCCTAGCCCTAACGGCCATGTCGCAGCAGAATCAACCAGCGAAGATGAAAGTGTTCCTGTCGACAAAATAAGAGTAGGTCGGGACTACCAGGCAGTATGTCCAGCTTTGCAGGCTCCAGAACTGAGACGACCAGATCAATTGGCAGACCGCGCCTTACTTGTTTGGTCTCCAACTGTAGATATTCCCGAAGACAAACTGGATCAGTACATATCACTCGCAAAAGAAAAATACGGTTACAATGGTGAACAGGCATTAGGGATGTTATTTTGGCACAAACATGATTTAGAACGTGCTGTTCTAGACTTAGCCAATTTCACACCATTTCCTGACGAATGGTCAGTGGAAGACAAAGTCCTTTTTGAACAAGCGTTCCAGTTCCACGGAAAAAGTTTTCATCGTATAAGGCAAATGTTACCGGATAAAAGTATTGCAAGTCTCGTGAAATATTATTACTCATGGAAGAAAACTCGCACGCGCACGAGTCTAATGGATAAACAGGCACGGAAATTGCAAGCGCCTCGTGATGAAAATGTATCGGAAGGTGGTTCAGAGGGCGGTTCAAATGAGGAGTCTGACCCAGAAGAAAAGAAGTGGACGATCCATCGCGGTATCCGTCGCAAGAGCGGCTCACCGCCAGCTCCAGGCCAGTCCACAGATGCCGATTCAGCCAATCAGGGGGAGGGGGGTGCATGTGGTAATTGCGGAGTAGCCTGCTCGTTGACACACATGTCACCCAAGGGACCGCTCTGTCTGTCCTGCTTCCAGCACTGGAGACGAACCGGTGTAGCTAGACCCACATCAGGGCCCGGTGCTGCAGGCAGTCGCAGAGGGGGCGGAGGGGCGGGCGCACGCCACAAGAGACGACCACCTCGCGGTATGCACATCAACCACGACGATCTGGTTGCTATGGCCGCAGTGCCCCACGGTTCATTAATTCTGCGCGCCATGGACCGTGAGATAGTTTCACTTAAAAGACAAGTCCAGCATAACAAACAGTCCTTAAGCTccctaaaacaaaaaacaaacgaagGTATCTCCGAGCTGCGGCCAGAAACGGACACGAGCGGTCGTATCAATTCTCGTTGGACGCAAGAGGAACTATTATTGGCCGTCCAAGGCGTTCGCAAATATGGAAAAGACTTCAAGTCAATCGCCGAAGTTCTTGGCACAAAAACGGAAGCTCATGTTCGTAGTTTTTTTGTCAATTATCGTCGCAGATATAATTTAGATGACATAATTAAAGAATACGAAAGTGAGCATGGTATTGTCAATGCAAATTCCGAATCGAACGCTGAAGAAAAGATGGAGGTTGATACCGCTGAAACTCCTGAAGCAATGGACGTTGTAGAATCTGCTGATACGACTTCTATACCAGCAGCTAGTAGTGGTAGTATGCCTATATCAAAAGGCaccatttcaaaaacaaatttagttGCGCAATCTGCTAATTGA
- Protein Sequence
- MVLAEKNNENARNGRRSRGPSPNGHVAAESTSEDESVPVDKIRVGRDYQAVCPALQAPELRRPDQLADRALLVWSPTVDIPEDKLDQYISLAKEKYGYNGEQALGMLFWHKHDLERAVLDLANFTPFPDEWSVEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKKTRTRTSLMDKQARKLQAPRDENVSEGGSEGGSNEESDPEEKKWTIHRGIRRKSGSPPAPGQSTDADSANQGEGGACGNCGVACSLTHMSPKGPLCLSCFQHWRRTGVARPTSGPGAAGSRRGGGGAGARHKRRPPRGMHINHDDLVAMAAVPHGSLILRAMDREIVSLKRQVQHNKQSLSSLKQKTNEGISELRPETDTSGRINSRWTQEELLLAVQGVRKYGKDFKSIAEVLGTKTEAHVRSFFVNYRRRYNLDDIIKEYESEHGIVNANSESNAEEKMEVDTAETPEAMDVVESADTTSIPAASSGSMPISKGTISKTNLVAQSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530124;
- 90% Identity
- iTF_01530124;
- 80% Identity
- -