Vnig018026.2
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000075.1:794597-796422[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-06 0.00023 21.4 0.0 2 41 19 58 18 62 0.92
Sequence Information
- Coding Sequence
- ATGGTtagaaactacaaaaaaaaacttgggggCCGATCGTATAAAAACTATTCAAATGAACATATTGAAGCTGCACTCGGTAGGATACTAAACGAAGGATGGACTCTTCGCCGTGGTTCTGTAGAGTACAGAATTCCATATGGAACCCTTCATAATCGATACCATGGCCACCACGGAAAAAGAAATGGAGGGCAAACTGTTTTTTCGGAAAACGAAGAAAAAGCCATTATCCGATCTGCAACTACCTGCGGTGAATGGGGATTTCCTCTTTATCTTACAGATATACGACATttggcaaaaaatgttttagataGTCAAGGGCGTACAGTTGATAAGTTCGTTGAAAATTTACCCGGAAACGATTGGGcttattctttattaaaaaggCACAAAAGTGAAATTACGCAAAAGATTGCTGCAAATATTCTGTCAAAACTTCTCTTGAAACAGCAGCGCGTGGCTGCTGTTTCAAGAGAAGTTTTgacagaatattttaaaaacctgGAAAACGAATTAAAAGATGTCCCACCAAGCAATGTCTTTAATTACGATGAGACGAACCTGCAGGACGATCCTGGTAAAAAAAGGATGATTTTTCGACGAGGGACTAAGTATCCTGAACAAGTGTGCAACTTTAGTAAATCCGCCATCAGTATAATGATGTGTATATCAGCTTCGGGAGCACTTTTGCCGCCTTATGTTATATATAAAGCCGAGAAAATGTGGCAACAATGGACGGAGAATGGGCCCAAAGGATTTCCTTGTTGCAGTGAACGCTGCTGCGCTTTAGGATCCCGTTATAATCGCACCCATCATGGATGGATAGATGCTCCAACATTCAACGACTGGTTCGAGTCAACTTTTCTCCCTCATGCGAAAAAACTACCTGGACGCAAGATATTACTAGGAGACAACTTATCGTCCCATTTCAGTGAAAGTGTTATAAATATGTGTGAAGCAAATAATATAGCATTCATTTGTTTGCCTAAAAATGCCACTCACCTCACGCAACCATTAGACGTTGTATTCTTTCGGCCTTTTAAAGAGGCTTGGAGAGCAATCCTAACCAACTGGAAAAGGTCACATTTAAATCAAACTTCTATTGACAAAAGAGATTTTCCACATTTACTAAAAGATACATTGAATAAAATGGACGCCCATAGTGGAGGAaacgctattaaaaaaaatatcgtagtGTCATTTCAAGCAACAGGCATTGTACCATTTAGACCAGTCGAGTTTTGGATAAGTTACCGAAAGAGGGTGAAGATGTTGATGCCACGAAAGAAGcgaaatataaaaagaacaaaattgtCTGTCGAACCAGGTAAAAGTGTAACAGCCACCAATAATGATTCAGATTCGAGTTCAGAAAACGACGACGTGTGTTCCATTGTCAGTGAAAGTTCAGACAATCAAGTTTTAGCAGAATCAGAAGATGAAATAGAATATATACAATATAGCGACGAAGACATAAAAGTTGGAAAATATGTGCTTGTCAGTGTTTTAGGAGGTCGAAGGAAAAAGGAAACTTATCGTTATGTTGCCGAAGTTTTAGAGAAAACAGATAATGATGAGATAGATGTAAATGGTTTGAAGTCATTAGATACAACCAAAACCAAATTTAAGATCACTGAAGGTGATGAATTTACCATAGCGATGGCGGATATAATTGCGCTTTTACCAGACCCGACAGTTGAAAGTACGTCCACTGGTAAATCATCCATTTACAACTTCACTAAACCAGTGGATGTCAAAGAAATGTAA
- Protein Sequence
- MVRNYKKKLGGRSYKNYSNEHIEAALGRILNEGWTLRRGSVEYRIPYGTLHNRYHGHHGKRNGGQTVFSENEEKAIIRSATTCGEWGFPLYLTDIRHLAKNVLDSQGRTVDKFVENLPGNDWAYSLLKRHKSEITQKIAANILSKLLLKQQRVAAVSREVLTEYFKNLENELKDVPPSNVFNYDETNLQDDPGKKRMIFRRGTKYPEQVCNFSKSAISIMMCISASGALLPPYVIYKAEKMWQQWTENGPKGFPCCSERCCALGSRYNRTHHGWIDAPTFNDWFESTFLPHAKKLPGRKILLGDNLSSHFSESVINMCEANNIAFICLPKNATHLTQPLDVVFFRPFKEAWRAILTNWKRSHLNQTSIDKRDFPHLLKDTLNKMDAHSGGNAIKKNIVVSFQATGIVPFRPVEFWISYRKRVKMLMPRKKRNIKRTKLSVEPGKSVTATNNDSDSSSENDDVCSIVSESSDNQVLAESEDEIEYIQYSDEDIKVGKYVLVSVLGGRRKKETYRYVAEVLEKTDNDEIDVNGLKSLDTTKTKFKITEGDEFTIAMADIIALLPDPTVESTSTGKSSIYNFTKPVDVKEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530074; iTF_01510513;
- 90% Identity
- iTF_01530074; iTF_01510513;
- 80% Identity
- -