Vnig013600.2
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- clz9
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000040.1:2620937-2622396[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-08 1.4e-05 25.3 0.0 4 42 14 52 11 55 0.91
Sequence Information
- Coding Sequence
- ATGTCTAAGCGTGGGCAGTATGGAAAATGGAGCcaacaaaatttagaaaatgcACTTGAAGCTTATAGAAACGGTGATTATGGCCTTAACGAATGTGCTCGTCAATTTAGCATTCCAAAAGCAACGCTAAAAAGACATTTGGACAATAAAAATAAGCATGCCAATgatggtataaaaaaaatgggaacATCTGCAGTATTTTCACAGGAGGTCGAGAATGAGATAACTAAGCACCTTCTAACCTTAGAAGAGAATATATTTGGGATGACAGTCAGAGACGTTCGGACATTAGCTTTCGAAGTGGCAGCTAAAAACGATATCAAAAACAACTTTAACCAAGATAAGCGAATGGCGGGAAAGAAAGCAAAAGGCTTTAACAAATCAAGAGTTGATAGTTTTTTCTCCCTGTTGGAAAAGATCTACAATGAAGAAAAATTTACCGCGGCACAAATATTCAACGTCGATGAAACAGGATGTTCAACTGTTCAGCGAAAATGCCAGAAAATAATAGCGCTAAAAgggaaaagtcaagtcggaagTCTGACAAGTGGGGAAAGGGGAGTTAACACTACTGCAGTATGTTGTGCAAGTGCTGCTGGACAGTACGTTCCTCCGATGATAATTTTCAAACGAAAACGCTATCAAGAAGAGCTCGCTGACGGTGCGCCACCAGGAAGCGTTGTAACGATTAGTGACTCTGGCTATATTAACTCTGAGCTATTTGTTAAATGGCTACGCCATTTTATTGATTTCATCAAACCAAGTAGTACCAAAAACCGAGTTTTGTTGTTGCTGGATGGACACTCAACACACAGCAAGAACCTTGAGGCACTAGAACTTGCTAGAAATAATGGAATCAGACTTCTCCAACTGCCTAGTCATACTACCCACCGTTTACAGCCGTTGGATGTCGGATTTTTTCGATCATTCCAAACATTTTACGGTCAAGCAATTGAAAAGTGGCTTCGAACGAATGTGGGTCGCACAGTTTCAATGTTTCAAATATCTGGGTTCATTGGTGAAGCATATGGTTGGTCAGCTACGATCAGAAATGCTACAAATGCATTCCGCGCTACTGGAATATGGCCACTTGACCAAAATGTGTTCAAGGAAACTGACTTTGCTGCTTCGAGGGTGTATGCATCAGCTGAAAGAGAAATTCAGTCCGAATCAGAAACGTCTTCTGACGAGGACCAACCTTTGGCCTTGTTTCAAAAGCGAACAAAGTCTCCAGAGACACAATTGCTAAATGTTTCAATACAAGAAATCTCACCATTacccattaaaaaaacaaacaaaatcataaataaaaaaactcgcaCTCAAGAGGCTGTAGAACTAACCAGTTCACCGTATAAAAATGTTCTGGAAGCTTCTAAGGCcggttga
- Protein Sequence
- MSKRGQYGKWSQQNLENALEAYRNGDYGLNECARQFSIPKATLKRHLDNKNKHANDGIKKMGTSAVFSQEVENEITKHLLTLEENIFGMTVRDVRTLAFEVAAKNDIKNNFNQDKRMAGKKAKGFNKSRVDSFFSLLEKIYNEEKFTAAQIFNVDETGCSTVQRKCQKIIALKGKSQVGSLTSGERGVNTTAVCCASAAGQYVPPMIIFKRKRYQEELADGAPPGSVVTISDSGYINSELFVKWLRHFIDFIKPSSTKNRVLLLLDGHSTHSKNLEALELARNNGIRLLQLPSHTTHRLQPLDVGFFRSFQTFYGQAIEKWLRTNVGRTVSMFQISGFIGEAYGWSATIRNATNAFRATGIWPLDQNVFKETDFAASRVYASAEREIQSESETSSDEDQPLALFQKRTKSPETQLLNVSIQEISPLPIKKTNKIINKKTRTQEAVELTSSPYKNVLEASKAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01510531; iTF_01510533;
- 90% Identity
- iTF_01510531; iTF_01510533;
- 80% Identity
- -