Vnig011499.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000030.1:4916980-4917678[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 3.1e-07 30.6 0.0 1 40 6 43 6 48 0.88
Sequence Information
- Coding Sequence
- ATGCGTATAAATTATTCTCCTGATGATGTAGCAAACGCTTTGAAAGCTATTGACACGGGTGTTTCACTGAGAAAAGCTGCTGCAGCATACGGAGTGCCTATTGCTACGCTTTCCAGAAAAAAAGGAAACCCTGAGATATCCAAACAAAAAACTGGACCACCAACAGTATTTTCTGATACTgaagaacaaaaaattgttgactGGATTCTATTTAGAGCTCAGCGAGGGTTACCAGTAACTAAAACAGAACTATTAGATTCTATCCAACAATATGTGAAtctatcaaacaaaaaaaatccatttattGACGGCCGGCCGAGTCGACATTGGTATGAGGGTTTTCGAAAACGACACCCTCAATTGTCAATCAGAAAGCCACAAAATTTAACTCACAGTAGAGCAGCAGTAACCGGTGATGACCTGAAAGATTGGTTTGATGAACAAGCGAAGtatttaagtgaaaaaaaattaatggatATTCCTTCTACAAGAATTTTCAACTGTGACGAGACTTATGTAAGTTTATGCCCTCCATCAGAGAAGGTATTATTAGAGAAAGGATGCCGTTCTGCTTATAAGGTGGTAGATTCTGAGAAAGAAGGCTTCACTGTTTTGTTCATGTACAGTGCTAATGGTGATCGTGCGCCCCCCCATGCTCATGTTTTCTTACAAAGCAGAAGTACCAgagaaaattgttaa
- Protein Sequence
- MRINYSPDDVANALKAIDTGVSLRKAAAAYGVPIATLSRKKGNPEISKQKTGPPTVFSDTEEQKIVDWILFRAQRGLPVTKTELLDSIQQYVNLSNKKNPFIDGRPSRHWYEGFRKRHPQLSIRKPQNLTHSRAAVTGDDLKDWFDEQAKYLSEKKLMDIPSTRIFNCDETYVSLCPPSEKVLLEKGCRSAYKVVDSEKEGFTVLFMYSANGDRAPPHAHVFLQSRSTRENC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -