Vnig003831.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000007.1:276337-278595[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-11 5.9e-09 36.1 0.0 1 42 13 54 13 56 0.96 2 2 3.6 5.1e+02 1.1 0.0 13 26 134 148 129 148 0.77
Sequence Information
- Coding Sequence
- ATGTACCCAATATGGCCTAAATCCAGAGGACAGTGGACTGAAGAAAATTTAAAGTTGGCCATAGAAAAAGTGAAAAAAggagaaatatcaaaaaatgaaGCACAAAGGCGTTATGGAATCCCGATTCGTACCTTTTCTAGACGAATTCAGACTGGCAATACTATCGAATCTGGGTTAGGACCTCAAGcaTCACTTGGACAGGAAAATGAAAAACGGTTAGCATCATACATTAAACGTCTTGCTAGTGCTGGCTTTGCACCTGATAGGAGTACGATTCGTTCCCTTGCTTATCAGTTTGCCGAGAAGCTTGGTATTCAACACAAATTTTCCAAGGAAAATGGTAAAGCAGGACAACACTGGCTTACATCGTTTCTCGAAAGAAACAAAGATATCTCCGTACGCCAAGCAGAAGGTCTTTCGGTGGCAAGAGCTCAAGAACTCTTTATGAGATGGTTTAAAGACCATTTCCTTCCACGAAAACCTAAAGAAGGCAagacaattttgattttggaTGGCCACTCTTCCCATTCCAATTCCATAGATCTGCTGGACCTGGCCAACGATAATGAAGTCATAATCATATGTTTGCCAAGTCATACAACCCAGGCACTTCAACCCCTCGATCGCAGTTTCTTCAAGCCACTGAAGACATTCTACAGCCAGGAGGCTCATTCGTGGATGTTGAGAAACAAAGATAGAATGATCACAAGGTTACAAGTCGGGACTATAATTGGACAAGCTTGGGGAAAAGCTGCCACTGTGGGCAACGGCGTGTCAGGTTTCAAGGCTTGTGGGATATTTCCCCTCAACCCGAATGCCATTCCGGATCACTTCTTTGCCATATCTGATCTAACTGATGTAGCCCCTTCAGCATTGTATTCTGCAATGCCATCACCAACTAAGCCATCCACTTCAGCCACGCCAGCTAACAAAAACACACCTACGAAGCTCCTTGAACAGGTAAACCCGATTCCAACACTACCTTCCTCAACAGTAAAACGCAAACAAGTTGCTTGTGTTCTCACATCGCCACAAAATGTAGACAAAAAAACTTCTAAGCTTAATTTATTGAAAGGAGAATCCAGAAAACGCAAGATTGCGTCCTTATCCTCTCAAAGAGATGAGTCCAGTCCCATTATGGATGACAATAATTTATGCATTGAGTGTTGGGAAAATTATCTTCTAACAAAGAAGAAAACCGACTGGATCAAATGTAGTGTATGCTTAAAATGGCTACATGAGTCATGTACGATGTACTCCCCCCATTGCAATAGTTGTGGGAGGGAAATCATACGAAAAAAACATCTTAAAAAGATAAAGTAA
- Protein Sequence
- MYPIWPKSRGQWTEENLKLAIEKVKKGEISKNEAQRRYGIPIRTFSRRIQTGNTIESGLGPQASLGQENEKRLASYIKRLASAGFAPDRSTIRSLAYQFAEKLGIQHKFSKENGKAGQHWLTSFLERNKDISVRQAEGLSVARAQELFMRWFKDHFLPRKPKEGKTILILDGHSSHSNSIDLLDLANDNEVIIICLPSHTTQALQPLDRSFFKPLKTFYSQEAHSWMLRNKDRMITRLQVGTIIGQAWGKAATVGNGVSGFKACGIFPLNPNAIPDHFFAISDLTDVAPSALYSAMPSPTKPSTSATPANKNTPTKLLEQVNPIPTLPSSTVKRKQVACVLTSPQNVDKKTSKLNLLKGESRKRKIASLSSQRDESSPIMDDNNLCIECWENYLLTKKKTDWIKCSVCLKWLHESCTMYSPHCNSCGREIIRKKHLKKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -