Vnig007730.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- clz9
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000016.1:7397849-7399582[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-12 1.7e-10 41.0 0.0 1 41 17 57 17 61 0.93
Sequence Information
- Coding Sequence
- aTGAGGACCTACCAAAAAACCCCGGGTAGCCGAGCCTACCATAACTTCTCGGAAGAGCAATTAGCCGAAGCGGTGCGTGCTGTTAAAGATGGGATGAGTAAAAAACAAGCGGCCAGGGTGTACCAAATTCCACGCAGTACGCTTACCAATAGATGTCTTGGAAGACATCTGCAACCCAGACGTCATCCCACAATCCTAAGTTCGGAGGAGGAGGCCACAATTGCCACCACACTGGGAATCGTAGCGGACTGGGGTTTCCCTCTAACTAAGGCCGATGCAAAGCAAGTAGTGAAAAAATATCTGGACAAAAAGGGTGTTGATATTCCCATCCTAAAAGACAATCTTCCGGGGGATGATATGGTAGCCTTATTTATCCAGAGGAACAATTTAGCTGTGAGGATAGCATCAAACATAAAAAGGGCCCGATCTTCTGTTGACCATGATGACGTTAATAAGTTTTTCAACAACATATCACAAGCTTTGTCAGAATCTACAGGTGACCATATATACAACTACGATGAGACCAACATAACCGATGACCCTGGAGCACGGAAAGTCATTGTTCCTAGGAACTGCAAAAGGGTGGAAAGGGTTCAGAATTTCTCGAGAACAGCAATCAGTATCATGGTGTGTGGAACTGCAAGTGGTGACCTTCTGCCTCCCATGGTAGTTTATAAGGCCTCCAACATCTACGAAAATTGGTGTGTCGGTGGGCCTACTGGAACTGTCTATAAAAATAGTCCAAGTGGATGGTTCGATGCCAATCTCTTTGAGATCTGGTTTGACCACATTTTACTGCCACACATCCAACGGACAAGGGAACCAGGAAAGAGAGTCATTGTAGTGGGCGATAATCTAGCTAGTCACTTCGCCCCAAACGTCATCCAGACTGCACTggaacatgatatttatttaacaccGTTTCCACCCAATGCAACCCATTTGATGCAGCCTCTTGATGTAGCAGTTTTTGCACCCATAAAAAGAAAGTGGCGAGTGATTCTAGATGAGTGGCGAAAGGAGAGCCGCTATCCTGGTTCGATTCCAAAGGAACAGTTTCCTCTACTTCTGAAAAGACTCTGGACGCAGATTCAACCCAAcgtcaaacaaaatttaattgctGGCTTTAGAGCCACTGGACTCTATCCATGCAACCCGCAGGAAGTTCTGAAAAGACTGCCGGATGCTCAAGTCCAGCAGGAACAGGTGGGGCGTCTATTGGACACAAGTCTTATTGAACTATTGAAAGAACACAGGGGTGTTGCTAGTGATCCGTCCACCAAACGCAAGCGTGGAAAAAAGGTTGAAGCTGGCAAGAGAATTGTTCCTTCATCTGTAACTGCCGATGATCCAGGTGACAATCCAGAAAACCCACCTGTTGATCAGATACCATCAACGTCAGGACTGCAGGAACTTACAAGGGCCagcaagaaaaaatatagaaaacaaaaacaGCCTCCAAAAGAAAATACAGCAGAAGAAGTTGCTTCCAACGGCAAGAAAAGGACTTCGGGGAGAATAAAAGAATCACAAGATAAATGCAGAATTTGTAAAATGCTGTGGACAAACTACCGAGGGCGTGTGGATTGGATAAATTGCAGCAAATGCCACAAATGGATTTGTGGCCTTTGTAACGACGATAGCAAGGACCCCTATTTTGTGTGTGCAATATGCGACGATGATTCAGACGAAGATCCGTTCCAGACGGATGAAGATGAGAATTTCGTCCCCTAA
- Protein Sequence
- MRTYQKTPGSRAYHNFSEEQLAEAVRAVKDGMSKKQAARVYQIPRSTLTNRCLGRHLQPRRHPTILSSEEEATIATTLGIVADWGFPLTKADAKQVVKKYLDKKGVDIPILKDNLPGDDMVALFIQRNNLAVRIASNIKRARSSVDHDDVNKFFNNISQALSESTGDHIYNYDETNITDDPGARKVIVPRNCKRVERVQNFSRTAISIMVCGTASGDLLPPMVVYKASNIYENWCVGGPTGTVYKNSPSGWFDANLFEIWFDHILLPHIQRTREPGKRVIVVGDNLASHFAPNVIQTALEHDIYLTPFPPNATHLMQPLDVAVFAPIKRKWRVILDEWRKESRYPGSIPKEQFPLLLKRLWTQIQPNVKQNLIAGFRATGLYPCNPQEVLKRLPDAQVQQEQVGRLLDTSLIELLKEHRGVASDPSTKRKRGKKVEAGKRIVPSSVTADDPGDNPENPPVDQIPSTSGLQELTRASKKKYRKQKQPPKENTAEEVASNGKKRTSGRIKESQDKCRICKMLWTNYRGRVDWINCSKCHKWICGLCNDDSKDPYFVCAICDDDSDEDPFQTDEDENFVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289685;
- 90% Identity
- iTF_01510399;
- 80% Identity
- -