Vnig003864.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000007.1:404432-408649[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-08 5.7e-06 26.5 0.0 2 37 12 47 11 53 0.92 2 2 1.3e-07 1.8e-05 24.9 0.0 2 43 65 106 64 108 0.91
Sequence Information
- Coding Sequence
- ATGCCGCCAATAAAAGGACAGATGTTTCGTTACGAGGCTGATATGGAAGCCGCTATTCAAGAATGCAGAGGAGGAGTTCCGACGTCAACTGCGGCAAAAAAATATGGGGTACCTAGGGTAACTCTGCTGAATAAAGTAAAGGCTTACATCAACATGGGCAAAATTTACATCCCGAAACCGAAAAAATATTCCGATGCTGATTTAGAAAAGGCTTTGAGTGAAATTAAAGATGGGATCTTAAGTGTGAGAAGTGCGGCAAAGCGTTATGGAATTGATAAGACATCATTAAGTAGAAGGAGTCGAGGGatagaaaaacaaaagcaaGGAAGGAAATGTGCATTGTCCAAAGAGGTTGAAGAAGATCTGTGTGAAAAAATCAAGATTCTAGCGAAATGGGGCTTTGCATTGTCACGAAAAGAGGTCCTAGAAATCGTTCAAGAATTTGTTGTGCAAAACGATATTAAAACAAGCTTTAAGGACTCTAAGCCGGGAAAAGACTGGTTTGTGGCCTTTTGCAAGAGGAACGGTCTGAGTTTGAAAAAGTTGGAGCAGCTAGAAAATTGCCGGTACAAAGCAACTAGTGATCCTTTTCTGATCTACCATTTTTACGACATATTGGAAGATATTTTACGTAAATATGAACTGGAAAATTCACCGGAAGCTATATGGAATTTAGATGAATCGTCCTTTTCTAGTGATCCATCCAGAATAAAAGGACTTGCCGCAAAAGGACAAACGGTACACCGAAAAATTGCAGGCAGTGGAAAAGAAAACACCACAGTTATGGCGTGTGTCTCAGCAGCCGGGACGGCACTGCCTCCTCTTATTATATATCAAGGTGCCCATTTATGGTCATCTTGGAAAGGCAATCAGGATCTGGAAGGCACTATGTACGCGTGTTCTCCGAAAGGATGGATGACAACAGAAATTTTCAATGAGtggtttaataaattttgttccgTGGTTGAAAATAGGCCCCTGGTTGTGATTCTTGACGGCCACATCAGTCATTTAGATACCGCAACTATAGAAAAGGCTATTTCTGAAAACATTGTGATCATCAAACTTCCATCCCATACCACGGACCTTCTGCAGCCGCTAGATAAAAACTGTTTTAGACCTATGAAACTCAAATTTGATGAAGCCCTAATACGCTGGCAAAGAGAGAATAGTGCGAAATTGTCTAAAAAAGATTTTAGCAATTTGTTGTGCTCTATGTGGCATGAAGGATTAACCAAAGGAAATATCATATCAGGTTTTCGCGCCACTGGTATATTTCCTTGTGATAGGAACAAATATCCCAAAGAACGCCTGGATCCGCAGAAACTTGTTcgttatgaaaataataaatccgaaaatattttcgatattGGCGAAGATTCATTGACCCAAGATATCCCTAATATCTCTAATAATGACGACACAGGTCGTCAAGAACCTGATGCAAATCCTACAGAAATCTCCCAATCACAACCTTCTGAAAACAGCATGTTAGGTGTGCCTAGCAGTAGCAATGTTAGAAGTCGATCATCCACTAGCACTGTGGCCACCGAAGAACAATCTTCCTTACAGCCTACTGTCTTGAACTCATCATTTGAGGACTTGTTATTAAATCGTTTTTCTGCTAAACAAACCGCGGCACCTGAAAAGCGTATGAAAATTGATGGAAATAGCTGCGTAATAACAAGCgcagaatttttgcagaaaatTCAGGAACGAAAGCAGAAAGCTATTAAAACTccgaaaatgaaaacaaaaaccaAATTTTCCAAACCAGGAATGaaaactaaaaagataaaaaagaacaaaaaaagaaatgaaacgaCCGAGGTGAATTCAGATTTCAGTGAATCTGATGAAATGAGTCTGAGAGATACAGATGATGACCTAGATCCTGAAACTTTCGATGACAATGAACTAGATGTTCCGGATGACGATGAGGAATTAAAAGTTGGGGACTATGTATTGGTTAAATTCCTAGGAGGAATGAGAAAAACTCGAATTCATCGTTATGTGTGTGTGATTCAAGAAGTGATAATCAATCATGAAAAATATGAAGTTATGGGGCTGAAGGCAATAGATAATTCAAAAATGGTTTTCTGGACTGTAAAAACTGATATATGCACTGTATCTCACGatcatattatttcaaaattgccAAACCCGACATTGACGGATTCTGAGAATCGAGTATTGTTAACTTTCCCATATGTTGTAGACATTTTtgaagagtaa
- Protein Sequence
- MPPIKGQMFRYEADMEAAIQECRGGVPTSTAAKKYGVPRVTLLNKVKAYINMGKIYIPKPKKYSDADLEKALSEIKDGILSVRSAAKRYGIDKTSLSRRSRGIEKQKQGRKCALSKEVEEDLCEKIKILAKWGFALSRKEVLEIVQEFVVQNDIKTSFKDSKPGKDWFVAFCKRNGLSLKKLEQLENCRYKATSDPFLIYHFYDILEDILRKYELENSPEAIWNLDESSFSSDPSRIKGLAAKGQTVHRKIAGSGKENTTVMACVSAAGTALPPLIIYQGAHLWSSWKGNQDLEGTMYACSPKGWMTTEIFNEWFNKFCSVVENRPLVVILDGHISHLDTATIEKAISENIVIIKLPSHTTDLLQPLDKNCFRPMKLKFDEALIRWQRENSAKLSKKDFSNLLCSMWHEGLTKGNIISGFRATGIFPCDRNKYPKERLDPQKLVRYENNKSENIFDIGEDSLTQDIPNISNNDDTGRQEPDANPTEISQSQPSENSMLGVPSSSNVRSRSSTSTVATEEQSSLQPTVLNSSFEDLLLNRFSAKQTAAPEKRMKIDGNSCVITSAEFLQKIQERKQKAIKTPKMKTKTKFSKPGMKTKKIKKNKKRNETTEVNSDFSESDEMSLRDTDDDLDPETFDDNELDVPDDDEELKVGDYVLVKFLGGMRKTRIHRYVCVIQEVIINHEKYEVMGLKAIDNSKMVFWTVKTDICTVSHDHIISKLPNPTLTDSENRVLLTFPYVVDIFEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01510534;
- 90% Identity
- iTF_01510534;
- 80% Identity
- -