Vnig007662.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000016.1:7202720-7207309[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-10 8.2e-08 32.4 0.1 5 39 1 35 1 41 0.89 2 2 2e-07 2.9e-05 24.3 0.0 4 40 522 558 522 562 0.93
Sequence Information
- Coding Sequence
- ATGCTTAAAGCTATTGAAGctgtaaaatcaaaaaaaatggGATACTTGCGAGCTTCAAAAGAATATAATGTTCCAAAAACCACTTtggaaaattatgttaaaaatgctcAAAAAACTGCACAAGaacttgtaaatttaaaaatgggcAGGCCGCCAGCCCTTCCAGAAGATATTGAAAATGATTTAGTTAATCACTGCTTAGATATGGATAAACGTTTTTTTGGTTTGAGATCTTCTGACATTAAAAGACTGGCTTTTCAGTTGGCAATAAGAAATAAACTGCctactaatttttcaaaaaataagcaGCAAGCTGGCTACAAATGGATGAAAGGATTCTTAGGTAGACATCCTACACTCTCATTTAGAACACCTCAAGGTACATCATCAGCTAGAATCAAAGGCTTCACGCAAGAAAACGTACAAAAGTTTTTTGATATATTAGAACCAGCCTTGCAGAAAATTCAGTTTAATCCGTTCAGAATTTATAATGTGGACGAAACAGGAATCACAACTGTGCAGTCCAAACATTCTAAAATATTAACCTTGAAAGGTAAAAAACAAGTTGGCGCCATTACGGCAGCCGAAAGAGGAGCATTAGTAACCGTAGTTACATGTATGAATGCTGGTGGTAGTTTTGTTCCTCCATTAGtaatttttccaagaaaaaatATGAAGGCCGAGTTGCTAAATGGAGCACCACCTGGAACTATAGCCGCTTGCCATATATCAGGATGGATACAGGGATACATATTTACCAACTGGCTTGAACACTTTATCAAACATGTGAAACCGACAGCCAATGATCCTGTTGTATTGATTTTGGATGGTCACTATTCGCATACTCGCAACGTGGATGTTATAAACATAGCACGCCAAAATTATGTTTCAATAATAAGTTTACCCCCGCATTGCACACACAAAATGCAGCCTCTAGACCTGGCATTTATGGGACCGTTAAAAACTTACTATTCGCAGGAAATAGAAAACTGGTTGAAACATCCAAATAACCAAGGACGAAATATCACAGCTTATCAAATTTGCGAATTGCTGGGAAAAGCATATGTGAGAGCAGCAACACCCGAGACCGCAATCAATGGTTTTCGCAAAAGTGGCATATTTCCATTTAACAGGTATATTTTTCGGGAACATGAATTCGCTATTCATACTCAAACTGAAGGAGAAAGGACTACTCCCGATCGAGTTCTTGAAGAATCGGGCAATAGGACGCCTTTACGCCAGTTTACTCCTGAAGAACCAATACATGTAACGCCGCCCCGAGGAATTGCCTTGTCTGAGCCATCAACGTCGGTTCATAATTTGTGTTGTGCGGTAGAACCTCGACATGTTGCTACTGTAACTACACCATCATGCAGTGCCACCGTCGCAGATATGGTGAGAGCTCAAGATATTAGTCCATTACCGTCTACATCGTTTCTTAAAACAACAAGAACAAGAAAAACTATTCAAGGTAGGGGAGGGTGGGGCACAGAGGACCAGTGGGGCACAGAGATGGTACGacattataaaaagaaaaagatcgAACCAAGTTGGAACAAAATTGACATGGAAAGGGCAGTTGCGGCTGTAAAATCTAAAGAGTTGTCAGCAACAAAATCATCCCAAAGATTCGGTATTCCCAAAACGTGCCTTCTACGGCGTCTTAAAAATAACACAGTTAGTGGGCCTCgtaatgacaattttaaaccTGTTTTTACCGCAGAACAGGAAAAGGAACTTGTTACTCACATATTAGATTTGGAAAGTAGATTTTATGGTTTGACTCCACGTGATGTACAAAAATTAGCATTTGATCTTGCGGAAAAAATGGGAATTTCTCATAATTTCAATCGTAACAAAGGGCTTGCCGGAAAAGATTGGTTGTCTGGTTTCCGCAAGCGGAATCCTCAAATATCGATAAGGGAACCGGAAGCTACAAGTGTGGCAAGAGCCGCTGCTTTTAATAGGGTTCAAGTAAAGAAGTTTTATGACATATTGAAATCTGTAATGGATCAATTTTCTATACAAGCAGATCAAGTATTCAATACAGATGAGACCGGAGTAAATACAGTTCCTAAGCCTAGAAAGATAATTGCTACGAAAGGCCGTAAACAAGTTGGACGAATAGTAAGTGCGGAACGCGGATTTAATATAACTGTTACCTGCGCAATATCAGCAACTGGACAATATATCCCTCCTTATTTTCTCTTTCCACGAAAACGTATGTCAGCAGCACTTATGAAAGGTTCTCCATCAGGATCAGTTGGATACGCAAATGGGAGTGGATGGATGGATTCAGAACATTTCATCAAATATTTGGAGCATTTCGTAAAATTTGCGAAGCCCTCAGAAAATAGGAAAGCTCTTCTTATTTTAGATAATCATGCAAGTCACCGGACTCTAGAGGCGATAACTTTCGCTCGTGATAATAATGTGATAATGGTTTCGTTGCCTCCACACACGAGTCATCGGTTACAACCATTGGATTGCTGTTTTTATAGCTCGTTAAAAAATCAGCATGCCCGAGAATGTGACCTGTGGATGACGAACCACCCATCGCAAAGAATTACAATTAATGATATAGTAGAAATTTTCGGAAAAGCATTTATAAGAACTGCTACGTTAGAAAAGGCGGTCAAGGGATTCCAAGTAACTGGAATCGTCCCATTTGATCCAGATATTTTTTCTGAAGAGGACTATTTGCCATCTCAGGTCACTGAAGTATCGAAACCTGCTAATTTGACTGACCGCTCAGCGATTCCAGTTTTACCTGATGTAACTCAGTCTGTGGACGATATGGATAAGTTGATGATTCCACCTACAGTCGGCAAAGAAACTCCGCCTCGTAATTCCACACCCACACCTCCATTAGCTACAGATATTTACGATAACCCCCAACCGTCAACCAGCTCCCTAGGCGTGACAAGCGTGCAAAATATTCTGCTTCAAATTTCACCAAAACCAGTCTCTCAAAGatctcaaacaaacaaacgcaAATCAAAAACTCAACATTCAGAGGAATTAACAAGTTCACCGTTTAAGAATATGAAGCAAATGGAAGAAGATGAAAAACTACGCAAAGCATTAACATCTTCTAAAAAAGGATGCaagaaaaaatatcttaatGGAAACAAagacaagaaaataaaaaacaagaaactTATCACTGAACCAACAGATGGCAGTAGCACTGATTCAGAAGACGTTGACAACACGAATCCGCAATGCATTTACTGCACAGAAAGTTTCTTAAAATCAAAAGCAAATGAAGGGTGGATCCAGTGTGATGTGTGCAAAAATTGGGCGCATGATGCTTGCGCCGGGGCCGAGGAGgacgataataatattatctgcATAAATTCGATCCTATGTGCCCCTCTCTCCCCTACGGCTAACTTGATCACTGGATCGCCGTACAAAAATGCCTTACAAGAAAGTTTGAAAGAGCAAGAAAAGAAGAAAAACGTTCAAAAAAGAACTCCTAGAATGAAGtgtgaaacaaacaaaatatatgacCAAGGTACGAAAAAAGGAGGTAAAAGTGGTATTGGAacgaaaaatcagaaaaaaaggaaaacaaaaaaactgagcAGTGACTCCGAAGAAAGTGAggaagaaataatattaaatgatGATTCTGATATGGACTGTGACAATGACGATGAAGATGCTGAGTGTTTATTATGTGGCGGTTTATTTTCCGAGGACATTCGAGGTGAAAAGTGGGTACAATGCGCGAAATGCTATAGATGGTGCCATGTTGATTGTGCCAATGTTGGCAAAAAAGACGCATTTATTTGCGATGTCTGCCTCAACggatag
- Protein Sequence
- MLKAIEAVKSKKMGYLRASKEYNVPKTTLENYVKNAQKTAQELVNLKMGRPPALPEDIENDLVNHCLDMDKRFFGLRSSDIKRLAFQLAIRNKLPTNFSKNKQQAGYKWMKGFLGRHPTLSFRTPQGTSSARIKGFTQENVQKFFDILEPALQKIQFNPFRIYNVDETGITTVQSKHSKILTLKGKKQVGAITAAERGALVTVVTCMNAGGSFVPPLVIFPRKNMKAELLNGAPPGTIAACHISGWIQGYIFTNWLEHFIKHVKPTANDPVVLILDGHYSHTRNVDVINIARQNYVSIISLPPHCTHKMQPLDLAFMGPLKTYYSQEIENWLKHPNNQGRNITAYQICELLGKAYVRAATPETAINGFRKSGIFPFNRYIFREHEFAIHTQTEGERTTPDRVLEESGNRTPLRQFTPEEPIHVTPPRGIALSEPSTSVHNLCCAVEPRHVATVTTPSCSATVADMVRAQDISPLPSTSFLKTTRTRKTIQGRGGWGTEDQWGTEMVRHYKKKKIEPSWNKIDMERAVAAVKSKELSATKSSQRFGIPKTCLLRRLKNNTVSGPRNDNFKPVFTAEQEKELVTHILDLESRFYGLTPRDVQKLAFDLAEKMGISHNFNRNKGLAGKDWLSGFRKRNPQISIREPEATSVARAAAFNRVQVKKFYDILKSVMDQFSIQADQVFNTDETGVNTVPKPRKIIATKGRKQVGRIVSAERGFNITVTCAISATGQYIPPYFLFPRKRMSAALMKGSPSGSVGYANGSGWMDSEHFIKYLEHFVKFAKPSENRKALLILDNHASHRTLEAITFARDNNVIMVSLPPHTSHRLQPLDCCFYSSLKNQHARECDLWMTNHPSQRITINDIVEIFGKAFIRTATLEKAVKGFQVTGIVPFDPDIFSEEDYLPSQVTEVSKPANLTDRSAIPVLPDVTQSVDDMDKLMIPPTVGKETPPRNSTPTPPLATDIYDNPQPSTSSLGVTSVQNILLQISPKPVSQRSQTNKRKSKTQHSEELTSSPFKNMKQMEEDEKLRKALTSSKKGCKKKYLNGNKDKKIKNKKLITEPTDGSSTDSEDVDNTNPQCIYCTESFLKSKANEGWIQCDVCKNWAHDACAGAEEDDNNIICINSILCAPLSPTANLITGSPYKNALQESLKEQEKKKNVQKRTPRMKCETNKIYDQGTKKGGKSGIGTKNQKKRKTKKLSSDSEESEEEIILNDDSDMDCDNDDEDAECLLCGGLFSEDIRGEKWVQCAKCYRWCHVDCANVGKKDAFICDVCLNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -