Vnig011495.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- bab1
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000030.1:4852903-4865984[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00076 0.11 12.8 0.0 20 35 4 20 1 25 0.87 2 2 1.6e-16 2.2e-14 53.4 0.0 1 43 134 177 134 179 0.95
Sequence Information
- Coding Sequence
- ATGCGTTTTACACAGGCTTCGGCACGCTACGGAATACCAAAAGGAACATTGTACGATAACATTTTGGGTAAATCGAAACGAATGGTGGTGCTTGAAGAAGCCGGCTTGACATCAGATGAAGAAAACGCTGTACTGGAATTTTGCTGCGACGTTTCAACCTCACCCTACAACAGACGTACCAAAAAGTCTTTGGCTTCGGTTTTAATGTTTGTTGAGAAAATTAGGCGCAGACGTGACCCTGAATTTATGTTCACCGGTTTGTCAGGTTTTCGGTGGTGGTGGGCTTTTTCAGACAGTTACCAGTACCAACTGCAATCCATGTGGCAGAAATGTTGGAACACGAATCAGAGTCTGGTCCACAACTTGAGGTTTCGAGAACGTGGGCCACTGAAATCGTGGAGGCCTGAGACGATGGCTGAAGCCATATTCTCTGTGCTGAAGGAAGGCCTGTCGTTATCGCAAGCCGCAAGAAAATACGACATCCCGTACCCAACGTTCGTGTTGTATGCAAACCGTGTTCATAACATGCTTGGACCGTCGGCAGATGGAGGAGCAGATCTGAGACCCAAGGGAAGGGGGAGACCGCAGCGCATTCTGCTGGGAGTTTGGCCAGATGAGCACATTCGAGGTGTTATCAGAGCAGTCGTGTTCCGTGATTCGCACCACCATATAAAAGAAGAAGCTCACCTGGCTGGTGCATATCCACGTTTACATGACGGATTGAGCGTCCAAAGCTATCCATCTAGTTCTTGCAGCAACGGACCAGAACCTACGGTATCGCCGAGTTCAGCCGCCGCAGCAGCAGTAGCAGCCGTAGCTCAAGGTCTCCGTCAACAAATGTGCAGTATGGTAGCCGCGGCACAACATCATCCGGGAGCACACCACGATCCAATCAGTTTAGTAAATTCCCTATCGCTTAGCGGTTTGATGCCGGGTGCTCGTAGTCCTACGGATTCAGCGCACGACTTAAGAATCAGCCCCGCCACGTCAGCACACGATCTAGACAGTCCGATATCGTCGCCCCTGACGATAGAACCGGCACTCAACCTAAATATCTCAAATAACGTCGAAGTCGGTATCGGTGTATCGGGAATGACTTATAAACCGCCTCGGAGTTATTCGTCACCGCGGCCGGAAAATCTTTTTCAGGAAGACATCGAGGAGCTGGTCAAGAGTCCGTTACAGTTAACTTCGCCGCGCGTTAGTATATCGGAACCCAAAGATCTCCCCATTAAAATGGAATCGATGGCTGAGTGTCGAGGAGAATGA
- Protein Sequence
- MRFTQASARYGIPKGTLYDNILGKSKRMVVLEEAGLTSDEENAVLEFCCDVSTSPYNRRTKKSLASVLMFVEKIRRRRDPEFMFTGLSGFRWWWAFSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHHHIKEEAHLAGAYPRLHDGLSVQSYPSSSCSNGPEPTVSPSSAAAAAVAAVAQGLRQQMCSMVAAAQHHPGAHHDPISLVNSLSLSGLMPGARSPTDSAHDLRISPATSAHDLDSPISSPLTIEPALNLNISNNVEVGIGVSGMTYKPPRSYSSPRPENLFQEDIEELVKSPLQLTSPRVSISEPKDLPIKMESMAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01529990;
- 90% Identity
- iTF_01529990;
- 80% Identity
- -