Basic Information

Insect: Venusia cambrica
Gene Symbol: pol
Assembly: GCA_951394065.1
Location: OX596066.1:3335278-3363044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.8 2.1e+02 3.3 5.7 1 23 1859 1882 1859 1882 0.91

2 10 7.4 5.7e+02 2.0 0.2 1 23 1886 1908 1886 1908 0.94

3 10 0.49 38 5.7 5.0 5 23 1916 1935 1913 1935 0.95

4 10 1.1 82 4.6 0.3 1 23 1939 1962 1939 1962 0.95

5 10 0.0036 0.28 12.4 0.1 3 23 2009 2030 2007 2030 0.95

6 10 5.4 4.2e+02 2.4 0.1 2 23 2041 2063 2040 2063 0.91

7 10 0.00017 0.013 16.6 2.0 1 23 2078 2100 2078 2100 0.97

8 10 0.027 2.1 9.6 0.3 1 23 2106 2128 2106 2128 0.96

9 10 9e-07 7e-05 23.7 0.7 3 23 2135 2155 2134 2155 0.98

10 10 0.0062 0.48 11.6 0.6 1 23 2161 2184 2161 2184 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.8	2.1e+02	3.3	5.7	1	23	1859	1882	1859	1882	0.91
2	10	7.4	5.7e+02	2.0	0.2	1	23	1886	1908	1886	1908	0.94
3	10	0.49	38	5.7	5.0	5	23	1916	1935	1913	1935	0.95
4	10	1.1	82	4.6	0.3	1	23	1939	1962	1939	1962	0.95
5	10	0.0036	0.28	12.4	0.1	3	23	2009	2030	2007	2030	0.95
6	10	5.4	4.2e+02	2.4	0.1	2	23	2041	2063	2040	2063	0.91
7	10	0.00017	0.013	16.6	2.0	1	23	2078	2100	2078	2100	0.97
8	10	0.027	2.1	9.6	0.3	1	23	2106	2128	2106	2128	0.96
9	10	9e-07	7e-05	23.7	0.7	3	23	2135	2155	2134	2155	0.98
10	10	0.0062	0.48	11.6	0.6	1	23	2161	2184	2161	2184	0.96

Sequence Information

Coding Sequence: ATGCCGAATTTTCtaggtaatttaaatgtttttgactATAAAATACACGAGTGGGAAGTTTTTTATGGTAAATTAGTGCAATTTATAAAGTTAAACACCATCtcagaagaaaataaaagtgcAGTGTTATTAACGCATCTGTCGGACGAATCCTACCGTCTGCTTCGGAATCTCGTGCATCCGAATAAACTCGAAGATAGTGAATACCTACAGCTGGTGAGAGTACTCAACAAGCATTTCACGCCAAAAAGGTCGACATTCGCCGAAAGGGCGAAGTTCTACGAGGCAATCAAATCTATGGATGAAAGCATCGAAGATTGGGCGGCACGACTACGTGGTTTGGCCGTAGATTGCGATTTTGGCACAGAACTCGATACTGTTTTGCGTGACCGTTTCGTGATAGGGTTTCGAACGGGGCATGAGCGAGATAAGCTTTTCGAGTGTAACTCTAAAACGCTGACGCTAGCCCAAGCACTGGAGGTCGCGCAGAAAGCGTCGTGTGCGCGACAGGCGCGCACAGAGGgtgcggccgccgccgccgccagcttGGCCGCCGCCGTCGTGAAAGAGGAGCCGGTATTTTACGTGCAAAGAGGTTCAAGCGGAGGCCGTCGTCGCGGCGCCACCATCGCCGCCAGCGCCTCCTACCAGGGGGCAGCCAGCACCAGCAGCGGCGCGGAGACTCGCAAAATCAACGACGGAGATAATACGCGTTGTTCAGTATGCGGTCTAAAAAACCATATTGCAATTCAGTGTAGATTTAAGAACTATAAGTGTTTGAGTTGTGGGCAGAAAGGCCATTTGAAGAAGGTGTGTGCGACTAAACAGTCTTATCTGCACAATGTTGCTACGGAGGGAATGCCCGTTTCCCAAGCGGACTGCAGTGAGTGTGAACTCTTTAACCTGAGGGACAAAGTTAGCGAGGAATTAGATAGGCTAGTCAGTTTAGGCATTTTAAAACCGGTTTGTTACTCCGATTACGCTACACCTATCGTTCCAGTATTAAAAGAAAACGGAAAGATAAAGATTGCAGAAAGCGTAACATATTTAGGTTACGTAATAGATAAGTCAGGTTTACGGACTTGCCCGTCCAAGGTCGAGGCGATACTCTGCGCCCCCGCACCTACTGACGTTTTAGGAGTAAAACGATTCCTTGGGGTAGTGAACTATTATAGGAATTTTATCCCAAACGCATCTTCATTGTTGAGTCCACTACATACATTATTACGCGCTGGTAGTGAGTGGCAATGGACGGAGGGCCAGCAGGCTGCATTTGAAAGCGTTAAGCGGGTGCTGGCCAGTGAGCGCGTGCTGGCGCATTTTGAACCAGAAGCGCCATTAGTGCTGACAGTGGATGCGGGCCCGTGCGGGCTGGGCGCCGTGTTAGCGCACCGAGACGCTGACGGTCGCGAGCGTCCAATAGCTTTCGCTTCACGATCGTTATCGACAAGCGAGAAGAACTATAGTCAGATTCAAAAAGAGGCCACGGCTATTATCTTTGGCGTGAGACATTTTCACCAGTACCTGTACGGGCGGCAAGAAccattcattttaaaaactgaCCATAGGcctttactttcaatttttggCAAAGACGAAGCAGTCGCAACAGAGTGCTCATCGTCATCacccccgccgccgccacccCCCGCAACCGCGCCGACTGTGCAAATCGTCCCAGCGacgccgacgccgccgccgccgccgacatcTCCTTCACAGTCTCCATCGGCTACCGCTGTGGAGGAGGTGCTGGCCGCGACAGATGGTGAAGGGGCTAGTTTAGTAAAAGATAGCCTATACAGAGACGGAATACGTAGCGGGGACAACCACAGGGCCAGTCAGTGTCTTAGTAAATCTACCTGTCGTGTGTGCCGGCGTAGGCATCATACTTATCTGCATACAAAAAGTATAGGATCAGGGGCTAATGGAACAGAGGGTAGAGATTCAACCACGGGAAAGGTATTAGGGGAAACAGCTGCTGCTCCAGTAGTTTGTTTCACATCGGAAGGACTGGCTCCTAGCAGCCAAGTCTTATTAGCAACGGCGCTCGTAAGGGCGGAATCAACTAACGGAGACACTCGAATCATTAGGGCGTTGCTTGACCAAGGATCGCAAGCATCTTTCATCACCGAGGCAACAGCTCAATACTTGGGCCTGAAAAGGACTCCAGTAAGGGGAGTGATCTCTGGAGTTGGAGGAAACTCTAGGAATTTATCCAACTCAATGGTAAACATAACAATCAAATCTATCTACGATCACAATATCACTCTAAATCTAAACGTCTATGTTTTAAAATCGATAACAACACTTCTTCCGAGTAAGGAGCTAGTTATGACAGATTGGGTTTTGGATAACCTACCACTGGCAGACCCTAAGTACAATATACCGAACAAAATAGACATGCTGCTTGGCGCAGGAGTGTACGGACAAATCGTGCAAGAGGGAGTCAAGAAGAACAAAGAAGGGACACTTCTAGCACAAAACACCACATTCGGGTGGATTTTATCGGGGGTAGTGTCAAATAATCAAAAACAGAATGAAATTTTGGTAACAATGCATACTCGTGTAGAAGATACTCAACTTAAGCGATTTTGGGAACTAGAAGCGGATCCTACAACTAACAGACATCCAACACTCACTGAGGAAGAAAAGCGGTGTGAAAAGTTCTTTGCAGAAACGACGAGACGAGATGCAGAAGGAAGGTACATAGTGCGGCTGCCGTTTAAATCAGAAGATCCAGATCTGAAAATAGGAAATACAAAAAGATTAGCAGAAAAAAGATTAAACTTATTACTAACAAAATTAGACAAAGCAACTGAGTTAAAAGTTAACTATACAGAAGTTATTAAAGAGTACTTACAGTTAGAACATATGGAGCCGATACCTGCGGAGGAAGTGAAGAACTCTAAAAGCACTTACCTGGCTCATTTTGCTGTCATCAGAAACGATAAAGACACCACTAAAGTTCGGATAGTCTTCGACGCAGCCTGCAAAGGTGAAAATGGTGTATCACTAAACGATCAACTGATGATCGGACCTACCTTACAACCGGAGCTAAGGCATCTCTTGATGAATTGGAGGTGGCATCGCATCTGCTTGTCTGCAGAtatcattaaaatgtacagGCAAATAAAAGTAGCAGCTGAAGATGTCGACTTTCAGAGAATCCTGTGGAAAGAACAACAATCAGAACAAAGTAAAGAACTACGGTTATTACGGATTACCTTTGGCACTGCAGCAGCTCCATATCTAGCAGTCAAAGCTCTCCAGCAAGTAGCACATGACGAAGGAGTCAACTATCCAGCAGCATCTGAAAAAGTAATAAGTGATTTTTATATGGATGATTTACTTACGGGAGCTGAAGACGTTACAAcagcaatgaaaatatatatgcatATGAACGGGCTACTTAAAAAGGGAGGCTTTGAGTTACAAAAATGGTCAAGTAACTGTGAAGAACTAATGGATAGGATACGGAAAACCGGAGAGGGGGTAGGTGAAGAAGAAAGTATCAAACTAAAAGAAGATGAAGTCGTAAAACTATTGGGACTTACCTGGAACAGGAAAAACGATGCATTTCAATACACAGTGACGTTACCACAGCtgcatgatacaacacctataacaaaaagaaaaattgtATCAGACATCGCTAAACTATTTGATCCGCTTGGATGGGTATCACCTTGTGTCATAGTAGCAAAAGCAATTATACAGAAACTCTGGATATCAGGATCTGGCTGGGATGATGTAgcaccaagcaaaatattaaatgagTGGCTGGAATATCGTATTGACTTACCATCTTTGTCGTCGTTGGCAATACCTCGATGGATCCAAACATCTCAAGGAAATAAACACGTTGAACTCCATGGATTTGCAGACGCATCTAAAATAGCATATGCTGCGGTCATCTACATACGAGTAGTTGACGAAAACGGAAACATACAAGTAAATCTGGTAACTGCTAAAACAAAAGTCGCACCAATAAAACAGGTATCCATACCAAGATTAGAACTTTGTGGAGCGGTACTGGTCACACGTTTATTAGTTGAAGTCGCCGAAGTTCTGAAAATCCCACGGGACTGTATCCACGCTTGGACGGACTCGACTGTAGTATTAGCTTGGCTCAACAGTCATCCGAATCGCTGGCAAACATTCGTGGCAAACCGGGTCTCTGAAATCCTAACAACTATGGATGCACAGCAGTGGTCACACATACGATCTAAACAAAACCCAGCTGACTGCGCTTCGCGTGGCTTAAAACCTGCAGAACTTATAAATAACAACTTATGGTTTGAGGGACCTGAAGTTTTACATGAAAAAGAGATTATTTACAACAGACTAATGAATTCAGAAACAAACATAGAAGAAATAAAGGTGCATCTGGTAACAAAACAAGAAACATTATGGGATAGGTTTTCAAATCTAGGAAGAATGATCAGGGTTATAGCGTATTGTAGAAGATTTTTAACGTGGAAGAAACGAAAACAAACTAAAGAAAAAGGGTTTCTAACGATACAAGAATTGAAAGAAGCAATGGACATCTGTATAAAAGAATGTCAAAAAGAACATTTTAGCGCGGAAAAAGCGAGTATGGAAATCAATAATGGAAAATCAACTAAACTTAGAGGTCCATTAAAATCTTTGAATCCCTACATAGATAAGAATGAAATCATGAGAGTCGGTGGACGGCTGCAACACTCCACATTAACGGAAGACAAAAAACATCCTATTTTGATCCCAAAGAAGTCGGTGTTGACAAACTTGATTGTGGCTGACGCTCACGAAAAAACTCTCCACGGCGGTTCTCAGTTAATGCTGACCTATTTGAGATGTAAATTTTGGATACTCGGTGCTAAAGTCGTAGTAAAAGCTTGTGTGCGAAATTGCGTAAAATGCACTCGCTACTCTGCGGCCACAACAACACAACAGATGGGGCAACTACCCGCGGCTAGAGTTACTCCGACAAGACCGTTTAAATGCAGTGGAGTGGATTACGCCGGTCCAATCAACATCCGAACGTCCAAAGGTCGTGGACACCATGCCTTTAAAGgctatatatgtttatttgtcTGTATGGCTACAAAGGCTGTACATATTGAAGTAGTTAGTGACCTGACTACTCAAGGCTTTCTCGCAGCCTATAAAAGATTCGTTTCTCGCAGAGGACATTGTTCAGATATCTGGAGTGATAACGGTACCAACTTTGTCGGAGCTTCCAGAGAATTAGCCAATCTAGTCTCTGCAGAAAAATCTAGTTTAACATCAGAAATAGCTCAGAGCTTAGCCAGTAATGGCACTAAATGGCATTTTATCCCCCCTCTTTCACCAAACTTTGGTGAAAAACGCGTGTACACACGTAAAGGTTTAACGGAGTACGCGGAGTATGGATCTGTGTTTGATATCGAACTCTTCAATACGGACGATGaAGCCCGCACTGAGCTCGCCCAGCGGCGCCTGGCTGAGCCGTACGCGTCCGCTCGGTACAAATGCGAGATTTGCTTTACGGTCTACAAATGCGAGAAACTGCTCAAGTTCCACATGAAATGGCACGATGGCTCGTCAGGTTTCGAGTGCGACATATGTCGCATGCGATTCGCGACTCGCAAGGCATTGCAGTGCCACAAGACTAAGTGCCACCGCGGGAAGTTCGCTTGCAAGCTGTGTCCTCTCATCACTTACTATGgATCGGCAATGAAGGCTCATTTTGAGAAGCACCAAGGGAAAACATTCAAATGTCACTGCGATCGAGTGTTCAACCACATATCGTCGTACCTGACTCACAAGCGCACGGTGCATGCGTCTGCGCATGTTTGCGTCTCGTGCGCGCGCACGTTCGTCTCCGAGCTCGGCTTGCTCAACCATCGGCTGAGAGCGCACCAGAGTAAATCGCTGGTGGATGGAGGCGGCACAACTCGCTGTGAGCCCTGTGAACTCACTTTCGCGAACCAACAAGTGTATACAGTGCATCTGCTCAACACGAGCGCTCATAAGGATATCGCGAACGACATGATAGCGTGTTCGTACTGCGGCCTGTCGTTTGAGGATGTGCCTGCTCTGAAGACGCACAAGCGACAGCTGCATCCAAAGAGGAAGGATGTACATGATCTCATTACTTGCAAACTGTGCGGCGCGTCTGGCCGCGGCCGCGTGTGGCGGCGGCGCCATTACGCGGTCTCACACCCGCACGTGCGTTATCTGGAGGACGTGTGTGAAGGCACGCCGCACATGTGCGACCAGTGCGGGAAGAGATTCAGCAACATATCCCTAATGAAGGACCATTTAAACTCGCACCTCGGCATCAAACCGTACGCGTGCGCCGAGTGCGGCGCGACGTTTTCAAGCGCCGCGTGTCGCTCCACGCACCTGGAGCGCCACGCGCCGCCGACGCGCGCGTGCGTCCACTGCGGACGGCGCTTCCGGACCGCCTCCAACCTCGCCGTGCATATGAGAatccacatcGGCATCCGGCGCCACGAGTGCGATGTCTGTTCGAAGGCTTTCCTCCATCGCGCGGCGTTGCGGGAACATATCCGAGGCGTGCATCGGAACTTGCGGCGTGCTAGGAACTCCACACTGGTCTTATAG
Protein Sequence: MPNFLGNLNVFDYKIHEWEVFYGKLVQFIKLNTISEENKSAVLLTHLSDESYRLLRNLVHPNKLEDSEYLQLVRVLNKHFTPKRSTFAERAKFYEAIKSMDESIEDWAARLRGLAVDCDFGTELDTVLRDRFVIGFRTGHERDKLFECNSKTLTLAQALEVAQKASCARQARTEGAAAAAASLAAAVVKEEPVFYVQRGSSGGRRRGATIAASASYQGAASTSSGAETRKINDGDNTRCSVCGLKNHIAIQCRFKNYKCLSCGQKGHLKKVCATKQSYLHNVATEGMPVSQADCSECELFNLRDKVSEELDRLVSLGILKPVCYSDYATPIVPVLKENGKIKIAESVTYLGYVIDKSGLRTCPSKVEAILCAPAPTDVLGVKRFLGVVNYYRNFIPNASSLLSPLHTLLRAGSEWQWTEGQQAAFESVKRVLASERVLAHFEPEAPLVLTVDAGPCGLGAVLAHRDADGRERPIAFASRSLSTSEKNYSQIQKEATAIIFGVRHFHQYLYGRQEPFILKTDHRPLLSIFGKDEAVATECSSSSPPPPPPPATAPTVQIVPATPTPPPPPTSPSQSPSATAVEEVLAATDGEGASLVKDSLYRDGIRSGDNHRASQCLSKSTCRVCRRRHHTYLHTKSIGSGANGTEGRDSTTGKVLGETAAAPVVCFTSEGLAPSSQVLLATALVRAESTNGDTRIIRALLDQGSQASFITEATAQYLGLKRTPVRGVISGVGGNSRNLSNSMVNITIKSIYDHNITLNLNVYVLKSITTLLPSKELVMTDWVLDNLPLADPKYNIPNKIDMLLGAGVYGQIVQEGVKKNKEGTLLAQNTTFGWILSGVVSNNQKQNEILVTMHTRVEDTQLKRFWELEADPTTNRHPTLTEEEKRCEKFFAETTRRDAEGRYIVRLPFKSEDPDLKIGNTKRLAEKRLNLLLTKLDKATELKVNYTEVIKEYLQLEHMEPIPAEEVKNSKSTYLAHFAVIRNDKDTTKVRIVFDAACKGENGVSLNDQLMIGPTLQPELRHLLMNWRWHRICLSADIIKMYRQIKVAAEDVDFQRILWKEQQSEQSKELRLLRITFGTAAAPYLAVKALQQVAHDEGVNYPAASEKVISDFYMDDLLTGAEDVTTAMKIYMHMNGLLKKGGFELQKWSSNCEELMDRIRKTGEGVGEEESIKLKEDEVVKLLGLTWNRKNDAFQYTVTLPQLHDTTPITKRKIVSDIAKLFDPLGWVSPCVIVAKAIIQKLWISGSGWDDVAPSKILNEWLEYRIDLPSLSSLAIPRWIQTSQGNKHVELHGFADASKIAYAAVIYIRVVDENGNIQVNLVTAKTKVAPIKQVSIPRLELCGAVLVTRLLVEVAEVLKIPRDCIHAWTDSTVVLAWLNSHPNRWQTFVANRVSEILTTMDAQQWSHIRSKQNPADCASRGLKPAELINNNLWFEGPEVLHEKEIIYNRLMNSETNIEEIKVHLVTKQETLWDRFSNLGRMIRVIAYCRRFLTWKKRKQTKEKGFLTIQELKEAMDICIKECQKEHFSAEKASMEINNGKSTKLRGPLKSLNPYIDKNEIMRVGGRLQHSTLTEDKKHPILIPKKSVLTNLIVADAHEKTLHGGSQLMLTYLRCKFWILGAKVVVKACVRNCVKCTRYSAATTTQQMGQLPAARVTPTRPFKCSGVDYAGPINIRTSKGRGHHAFKGYICLFVCMATKAVHIEVVSDLTTQGFLAAYKRFVSRRGHCSDIWSDNGTNFVGASRELANLVSAEKSSLTSEIAQSLASNGTKWHFIPPLSPNFGEKRVYTRKGLTEYAEYGSVFDIELFNTDDEARTELAQRRLAEPYASARYKCEICFTVYKCEKLLKFHMKWHDGSSGFECDICRMRFATRKALQCHKTKCHRGKFACKLCPLITYYGSAMKAHFEKHQGKTFKCHCDRVFNHISSYLTHKRTVHASAHVCVSCARTFVSELGLLNHRLRAHQSKSLVDGGGTTRCEPCELTFANQQVYTVHLLNTSAHKDIANDMIACSYCGLSFEDVPALKTHKRQLHPKRKDVHDLITCKLCGASGRGRVWRRRHYAVSHPHVRYLEDVCEGTPHMCDQCGKRFSNISLMKDHLNSHLGIKPYACAECGATFSSAACRSTHLERHAPPTRACVHCGRRFRTASNLAVHMRIHIGIRRHECDVCSKAFLHRAALREHIRGVHRNLRRARNSTLVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -