Vcam023805.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:8501052-8503703[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 1e+02 4.3 0.1 2 23 25 47 24 47 0.93 2 11 0.037 2.8 9.2 1.3 3 23 85 105 85 105 0.99 3 11 2.1 1.6e+02 3.7 1.4 1 23 113 136 113 136 0.92 4 11 0.00032 0.025 15.7 0.9 2 19 199 216 198 219 0.92 5 11 1.7 1.3e+02 4.0 0.1 2 10 234 242 233 251 0.85 6 11 0.0052 0.4 11.9 0.2 2 23 258 280 257 280 0.95 7 11 0.014 1.1 10.5 0.7 2 23 288 310 287 310 0.94 8 11 0.0018 0.14 13.3 2.1 1 23 319 342 319 342 0.97 9 11 0.001 0.077 14.1 3.1 1 23 348 371 348 371 0.96 10 11 8.6 6.6e+02 1.8 6.0 1 23 497 519 497 519 0.96 11 11 0.00012 0.0093 17.0 0.8 2 23 526 548 525 548 0.96
Sequence Information
- Coding Sequence
- ATGAAGGAGGGTCCTGATGAGGAAATGTCTGAGGAGGAAATGAGCCATGACGCGGCTTACGTATCCGATACAACTTGTCCAACTTGCTTCGCCGAATTCTTAGACGAAGAAGATTTAGAAATCCACGTAAAACAGATGCACGCTGTTGAGTTTGAGCCGACTAAAGCCTGCCAATTATGTCCAGTGACCCATGCCGACGATCTAGAGTACGCAGCTCATGTAAGAGACGTGCATTTAATGGAGCTGCGAGGCTGTAGGTACTGTGCAAAGCTGTTCACTGATAGTGGCAGGTTGAGACTACACGAAAGAAGGCATATAAGTGATGAAAATAGGTTTTACTCCTGCTCTCAGTGCAATTCGATGTACAAAGACATCTTTTCTCTTCAGTTTCATGAGCGGAACCTGCACGATAACCGCAAGGATGGATTTTTGCTTGAGTGTATGCAATGTCTCTCATCGATTCTGTGCTTAAATGCGGCAAGGCTGATACAATCACCCGGTAAGAAGGTGTTAAGATGCACCAGTTGTCAATTCACGTCGTTAAGTTTACTGGCTTACACACAGCATCTCAAAGTATCGCTATGTGAAAGCTTAGTCTGTGATCAATGTTCAGAATCGTTTAAAACGaggaaaaatctgatgagacaCTTTACGAAAGCCAAAAAGTGTTTCGGAAACAGGTTTGTCGATGATATGGTTATGTGCAATGACTGTGGCAAATCTGTACAACCAAAAGCGATGGTATTCCATTTGAAGAGTTGCACTGCCTTGCGGTGTGTTGATTGCAACCAGATATTTCAAACAATTGACAACTTGTCTGAACATCAGGCTAAAGAGCACCCATTAGGCCTGGATCTGATTAAATGCAAGTATTGCCTGAAAGAATTTATCGGGCATGAACCTTTGAAGAAACACATAGGACGTGTACATAAACCTACTTTCCATCTGTACAAATACCAATGTAAGGAATGTGATGCAATATTTCAGCACCCGCAGAAATTATTTGCACACTATTTCACTCAACACAAAGAAATCCAGCCGTTTCACTGCAAAATATGCGATAAGAGATTTCGAGTGCGTAAAGGGTTCTCTCTCCATATTAAGCTTGACCATAAAAGCGTAGGATTTGTTGAGTTTGATGAACAGTATCGCGTATACTTCACCAATAAGAAATCTGACAAGCCTTTTGTACCAAAGTGCGTTATACCTGATGAAGAATTGTATggttttgatgatgatgatgatgatgatacactGGATGGCATTCAACTGCAAGATACAGATGCTACTGATGCTGAGACTGAAGACGATATTAGACCAGCCAAAAAGAAATCACCCCTGAAAGGGGGTAAAACAAAaaagacaagaaaaaaaaaaccagtagcAGTGTACTCCTCTGATGAAGAACCGCTATTAGCTGTCAGAAAACGAGCACTTAAAAAGAAATCAATGGAACGTTCGTGGACgtggaaaaaaacaaaatatcagtTCATGTgcaatatttgtaaaataaattgttacacCTTTCAAAATCACCTAAACCATATGAACTCGCACAACAAAGATCAAGATATTGAATGcgttaaatgttttaaaatgttcaattCTCAACGTGAATTGTCCAGACATATCAGCACAGAGCATGCTTCTTCTAAACTTACAGAGACTTTAAAGAGCTTACTCCAGAAGAAAAAGCAAGAAGAGAACTTTGATGACAGCAATCCAAAAACGAATATCTCAAAACCAGGAGATCGTTTCAAAATAGCTATGACTAAAGTTGAAATAACCAAAAGTGATGTCGCAGCCAAAATCACTCCGGTAAAAAGTGGTTTATCCGTCAAAAACTTCCTTGAAAACTTCACTCCCGATGTCACAGAGTCGAAAGACAAAGCAGAAGTTGTATCCAGTGTTACAATAAAACCGTACCACAGCCCGTTCTTCCGACAATCCACCATCAAATTGACAAAATTCAAAGATGAACCCATTTATCAAAATGTACCTTTGCGAATGCCGGAACGGTTCAAAGAtcaaaactataataaaactaaaataacaattaaaatggtACAGAAAACATACAAACCACCTTCAGATTTCACCATACCAGATATCACAGATGGTAACACAGAAAGTTTGGAATTGGACTACAGTGATGTGTTTCAGGACCATGATTATGCAGACGATCAAAATATGAACATACCAGAGGTTGCTCAGGAAGTATCTCTAGAAGATACCGAAGAGCCTCAGGAATTGACCAAGATTATTATACCGAAGATGCCTGAAGGATACAAGAAGATCCACATAGCTACCCTGCAATCCGAAGCCCCGTACTACAAAATAATCAAAGTGGATTCCGACAACCTTACCATTAAcgacaaccaaaccaaacctcCGACAACCCAATCCAATGTCTATGAAATAGGTGCAACTAGATTGGTCACAGCAAATCCGTTGGCACACCTCTTAGGAAATTCAGCCGATAAAATCTTGGAACCATTAAGGAATAAAAAGCTTCCAAAGAGAGATTATCAAGATATGCTTGCTAAAGCCATGAAGAAATTGGATGAAGTACCATCTAAAAAACCAAAGATCAAGAAGAAAAAAGAATTGGAGGCTCCCAAAGATGTAAACGAAACGGATGAGCTTGAATGA
- Protein Sequence
- MKEGPDEEMSEEEMSHDAAYVSDTTCPTCFAEFLDEEDLEIHVKQMHAVEFEPTKACQLCPVTHADDLEYAAHVRDVHLMELRGCRYCAKLFTDSGRLRLHERRHISDENRFYSCSQCNSMYKDIFSLQFHERNLHDNRKDGFLLECMQCLSSILCLNAARLIQSPGKKVLRCTSCQFTSLSLLAYTQHLKVSLCESLVCDQCSESFKTRKNLMRHFTKAKKCFGNRFVDDMVMCNDCGKSVQPKAMVFHLKSCTALRCVDCNQIFQTIDNLSEHQAKEHPLGLDLIKCKYCLKEFIGHEPLKKHIGRVHKPTFHLYKYQCKECDAIFQHPQKLFAHYFTQHKEIQPFHCKICDKRFRVRKGFSLHIKLDHKSVGFVEFDEQYRVYFTNKKSDKPFVPKCVIPDEELYGFDDDDDDDTLDGIQLQDTDATDAETEDDIRPAKKKSPLKGGKTKKTRKKKPVAVYSSDEEPLLAVRKRALKKKSMERSWTWKKTKYQFMCNICKINCYTFQNHLNHMNSHNKDQDIECVKCFKMFNSQRELSRHISTEHASSKLTETLKSLLQKKKQEENFDDSNPKTNISKPGDRFKIAMTKVEITKSDVAAKITPVKSGLSVKNFLENFTPDVTESKDKAEVVSSVTIKPYHSPFFRQSTIKLTKFKDEPIYQNVPLRMPERFKDQNYNKTKITIKMVQKTYKPPSDFTIPDITDGNTESLELDYSDVFQDHDYADDQNMNIPEVAQEVSLEDTEEPQELTKIIIPKMPEGYKKIHIATLQSEAPYYKIIKVDSDNLTINDNQTKPPTTQSNVYEIGATRLVTANPLAHLLGNSADKILEPLRNKKLPKRDYQDMLAKAMKKLDEVPSKKPKIKKKKELEAPKDVNETDELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -