Vcam010678.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596045.1:4123922-4152128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.35 27 6.1 0.2 2 23 400 421 399 421 0.94 2 13 0.024 1.9 9.8 3.8 2 23 513 534 512 534 0.95 3 13 0.11 8.5 7.7 1.5 1 23 545 568 545 568 0.92 4 13 3.3e-05 0.0026 18.8 0.4 2 23 575 598 574 598 0.97 5 13 0.064 5 8.4 0.2 1 23 604 626 604 626 0.93 6 13 0.0047 0.36 12.0 2.1 1 23 632 654 632 654 0.98 7 13 0.76 59 5.1 0.1 2 20 665 683 664 685 0.88 8 13 0.067 5.2 8.4 0.3 1 23 763 785 763 785 0.97 9 13 1.9 1.5e+02 3.8 7.2 1 23 792 814 792 814 0.95 10 13 0.0039 0.3 12.3 3.5 1 23 843 866 843 867 0.94 11 13 0.00044 0.034 15.2 2.0 1 23 873 896 873 896 0.97 12 13 0.0035 0.27 12.4 0.2 2 23 918 940 917 940 0.96 13 13 0.0041 0.32 12.2 1.5 3 23 982 1003 980 1003 0.94
Sequence Information
- Coding Sequence
- ATGACTGACAATGTTTACACATACTTGATCAAACTAGAACTGAGTGACCCGGACATGGTCCAAAGCTACGATCAACCGTTGGATCCAAATGAACAATCTTTGGACTTAAACGATGATGAACTTTACGTACTAGATGATGGCACCCAAATAAGAGCTTCGCAGATACACTTTGATAACGAAGATACCACATTAGATCTATCGCTAGAACAACTACCCTTCATCAAAGTAAGAAACGAAGATGACGATGTTATCGGCACTGAATTTGAAGAATTTGCCCACAAAATTATAGCGAGTCCGATTCCTACCTCTAATTCGAGCCCGAAACACGGTTTCATTAACCGAGTGCCTTTTAAACTTGTATGTAATAACACTTCTAGCTTCGAAGCTCAGCTTACAAAGTATCTTGAGACTAGCAACAAAACTTATGCTACGCTCAGCACTGTCACAAAAAAGAACATATCTCCTAGAAGCTTGATTAGAGATAACTTCAAAGAAAAAGAAGAGTTTAGATACACCCGTGAAGAGATTTTAAACATGCTCAAAGATTCTCCAGTAACCAGTATTCCTTACGAGAATAATGAGAAGAAACATGTTAGGAAGACGGATCCAACTAAAATGGTGCAGAAGAGTAGCACGAAGGCGATTGATATAGAAGGGTTGGTTATAGGCGATGGTGGGAATAGGATCTGTTTCATTTGTGGTCACAACGTAAGCAATGATAAAGTGTATCTCTTCGATAAGGAAGACCAAAAGATGCACAAATGCTCACCACAGAAAAAGGCTCCTACGCAACTGAAAGTGATATGCGAGAATTGCCTGAGCGACAATTTTAAACCGTCGCGGATGAAAGGGCCTAACCAATTCTTGAACTCAGACGAATACTTGGTGATCAGAAACAACCAGCAGTACATTTTTCAAAAGACAAAGAACTTCGCATTTCACACAGACACTATCGACAAAAAGATAAAGAAAGATGAATTTGTGAAGTTCGAAATTGGATCCGACGGTGAAATTGTCACTAAACCGGTGGATGATGATGTCATTCTCGTGCATGACGGTAGGAAGGACAGTTCCAGCGATTTGGAGATTATAGAAGCCGAAACGGAGGTGGACAAAATAATAGAGAACTTGGAGGAGGCGGATGAAGAAGTGAAGCTCTTTTTAGGGAAGTACGAATGTGACAACATCAATGAATTGAAATGCAGATTTTGTGACCAAAAATTTTCGGCTGTGTCAGAAGTGATAGAACACGGGGAAACGCACAAACACGAAACCGAGGATGACGTAGTATATCCTTGCCCTTTGTGCGACTACGatgcGGAAAACAGTGAAAGCGAAGCTATAGCGGATTCTAATAAATCGCATTTGCCGGATATGATAATGGAAACGGAAGTGAAGCAAGAAGCAATAAGCAGTGATGATGAGATATGGATCGTGCAGACTGGCGATGAAGAGCCTCAACATCTGACCACTATACTAAAAGCTGCTTCGAGGCAACGTAAGAAGTTAAAAGACACTTCTGATCCTCAAATCGTGACCTGCCATAACTGCGATCAGTCCTTCACTTCTAAAGTGCGGCTTAAGTTTCATATGCAGTTCCACGACACCACAACAATGCTTACCGATGGGTTGTACCGATGCGCCCAATGCGGGGACACTTTTGACAGTGAAACGCAGCTGTTCGATCACGTGCATTTCACTCATGAGAAGACCAAGAGGTGGCAGTGCCCAGTCCAGGATTGCGGGAAGACTTTCTATCTGAGGGCAACACTGACAAAGCACAGTCGCACGCACACAGACACGCGTCGTTATGTGTGCGTGACGTGTGGGAAACGGTTCTTGGACAAACAGACATTGGACGAGCATGGCGTCACTCATTTACAGTCAAAACCGTACCAATGCCACATATGCCTGAAGAAGCTAACCCGCGTCTCCCGACTCCGCATGCACGTGAGGGCGCATGAAGAGGAGCTGGCGCCGACCCTGCTCATGGTCTGCAGGGTCTGTTCCAGGGCGTTTAGAGACCACCAGGAAGCTCAGGAACATGCCTTAAAATCAACGGAGTGCAACGAATCGATCGCCGGCGAAGTAAAGACTGAGGAAGAAACAGCTGTTCAGCTCTCGCCCACCAGTGGGATAGTTCGACAGACCATTCAAGTTATTGAGTGCCCTTCTCCCAAAACCCGCGTGCCCCGTCAGGTTCCGTCTCCCGTCGCCGCCCCATTGCTTTCGTCTCTGAACGACGAAGCTTTACCTTTGATTAGAGTTGTCGAAATCGAGAAAGCTTTCAGATGCGAGTTCTGTGAAGATGTGTTCTACAAAGAAGATGGGTTGAACACCCACCGAGCTATCCACAAGGGGGTGAAGAACCCATTTACCTGCCACATCTGTAAAGTCAGCTTCGCTACTTACTCTAGATGCACTACCCACAAAACCACCCACGGGTTCTACAAACGACCGGCCGCGACCGGTAACGAGCAAGCGACCAGTGTCGTCGGATATGGCGACTTTCCTACCGTCAAACACTTCCTGTGCGAGGATTGCGGTCGGTCTTACCTCCACTGGACGTATCTACAAGTGCACAGACGTATGAAGCATCACAATGAACAATCCTCACACAAATGTAACCAGTGTGACACCACCTTCCCAAATAGTTGGGGCTTGGCTTACCATCGTAAGAAAATGCATGCAAAGACGGCCCAACAGGAAGAATCTACTAAACCCAGCACTATCGTACAAAATTATCGGATACCATGCCGTGATTGCGACGAGGTGTTGCCAAACAAAACAGCGCTCTATAAACATAGGAAGAAGGAGCATATCGGTGTGTCGATGCAAGAGTTGAACGCTGACACACCCAGATCCACTTACTCCAGCATTCCGGGAGAAAGGATGTCAGCGATGCGCAGTAAGTTGGTCCAATACGGCTTCCGAGCGTGGGCATGCGCACGTTGCCCGCGTCGCTTCCGGATCCGGTCGGAGCTTCGTGCGCATACGAGACACAAACATCCGGCTTTCGTCGCAGTCCTAGAGGTTCACGGCCCAAATATAACTAATGAGGAGGCTCTGAAGATAATAACTGAGAACAACATCAGCCAAGACAGGATTATTGAAGTCAATCTTATGTCCTTCACCAAGGGCACAACAAGCATAATTCCAAACTGCGCCAAGGCACTGGCGATGCTCGGAAACATCCCCCGAACGCAGATTGTAATCCCGAGACCTGCCCCCACAGAACCCGGTATAGTTAATACAATGGAGTTCCACCATCCTCGCGTGGTAGCCAGTAATCCGAGAAGGCCAGCTATACTGCGCTCCGAGGTACAAATACCTCAAGCCAGCTCTCAGAGCATTCAAGACTTAAACGTGCAATTTCTCCTGCAAGAGGGCGTTCTCGTCAATAATCAAATGCAAAACGACTCTGTAAAATTAGAATAA
- Protein Sequence
- MTDNVYTYLIKLELSDPDMVQSYDQPLDPNEQSLDLNDDELYVLDDGTQIRASQIHFDNEDTTLDLSLEQLPFIKVRNEDDDVIGTEFEEFAHKIIASPIPTSNSSPKHGFINRVPFKLVCNNTSSFEAQLTKYLETSNKTYATLSTVTKKNISPRSLIRDNFKEKEEFRYTREEILNMLKDSPVTSIPYENNEKKHVRKTDPTKMVQKSSTKAIDIEGLVIGDGGNRICFICGHNVSNDKVYLFDKEDQKMHKCSPQKKAPTQLKVICENCLSDNFKPSRMKGPNQFLNSDEYLVIRNNQQYIFQKTKNFAFHTDTIDKKIKKDEFVKFEIGSDGEIVTKPVDDDVILVHDGRKDSSSDLEIIEAETEVDKIIENLEEADEEVKLFLGKYECDNINELKCRFCDQKFSAVSEVIEHGETHKHETEDDVVYPCPLCDYDAENSESEAIADSNKSHLPDMIMETEVKQEAISSDDEIWIVQTGDEEPQHLTTILKAASRQRKKLKDTSDPQIVTCHNCDQSFTSKVRLKFHMQFHDTTTMLTDGLYRCAQCGDTFDSETQLFDHVHFTHEKTKRWQCPVQDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQSKPYQCHICLKKLTRVSRLRMHVRAHEEELAPTLLMVCRVCSRAFRDHQEAQEHALKSTECNESIAGEVKTEEETAVQLSPTSGIVRQTIQVIECPSPKTRVPRQVPSPVAAPLLSSLNDEALPLIRVVEIEKAFRCEFCEDVFYKEDGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPAATGNEQATSVVGYGDFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHHNEQSSHKCNQCDTTFPNSWGLAYHRKKMHAKTAQQEESTKPSTIVQNYRIPCRDCDEVLPNKTALYKHRKKEHIGVSMQELNADTPRSTYSSIPGERMSAMRSKLVQYGFRAWACARCPRRFRIRSELRAHTRHKHPAFVAVLEVHGPNITNEEALKIITENNISQDRIIEVNLMSFTKGTTSIIPNCAKALAMLGNIPRTQIVIPRPAPTEPGIVNTMEFHHPRVVASNPRRPAILRSEVQIPQASSQSIQDLNVQFLLQEGVLVNNQMQNDSVKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -