Vcam025273.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- GIS1
- Assembly
- GCA_951394065.1
- Location
- OX596069.1:6968651-6986802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.17 13.1 4.5 1 23 317 340 317 340 0.97 2 12 0.32 25 6.2 3.5 2 23 346 367 346 367 0.96 3 12 8.5 6.6e+02 1.8 0.3 1 10 371 380 371 384 0.88 4 12 0.004 0.31 12.2 7.5 1 23 398 421 398 421 0.98 5 12 0.00066 0.051 14.7 0.3 1 23 425 448 425 448 0.96 6 12 0.044 3.4 9.0 0.0 2 20 461 479 460 481 0.92 7 12 0.00059 0.046 14.9 5.4 2 23 508 530 507 530 0.93 8 12 0.25 19 6.6 0.0 2 23 540 560 539 560 0.95 9 12 2 1.5e+02 3.8 1.2 1 10 566 575 566 575 0.95 10 12 0.00057 0.044 14.9 1.2 1 23 594 617 594 617 0.95 11 12 0.00037 0.029 15.5 4.0 3 23 634 655 632 655 0.96 12 12 0.00066 0.051 14.7 0.0 3 23 668 689 667 689 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAAACTATGTCGAATATGTCTAAACAAAAGCACGAAGCTATATAAACTGAACCAGTTTAATTTGAAACTGTATTACGAACAAATAACACAAAGCCAGGTACAATTCAAAGATGAGCTACCGCAGCATTTCTGCTATGAGTGTGCAGCATTGCTCCACAAGTACCACAAGTTCAAACATAAATGTGATTTTGGGCAAACTACCTTGAAAAACTTGCTAGGAAGTggatttCTGACCTACCATGTGATAGAAGATATCCGAAAAAACCGTACAGATCTGCACTCCACATTAGATAACATAAGCGAGGGTTGTATCAAGCGAGTTAAAACCTTCAATGTTAAATACAAGAAAGAACTGGAACCGCTTGAAATGGAGAATGTCATTCTAAACCCTTTAAATGTTGAGTCATATAATTATGAATTCAATGATTTACACAATGATATCAAATCGGAAGAAGATGAAGTCACAGATAAGAAAGACAATATTCCTAATAAGTCAGACTTGAAACTATTACCTGATCTCACTAATCTAGATTCTGATgtagattttaataaaaccaaTGTGTTGTCTGAAGCAAATGCAACTCTGACTGATTTAGGCATACCAATGACCAACATCCAAGAGCCAGAAGACAGTAATTTATACAATTTGCTATTTGAATCTGATCTAGATGACTCTAACGATGCAACATTCTCTATAAATGATATCGAAAAATCTGTTAAAATcgagaaaagaaataaaaaagccAAGAAAGTTACAAAAATTAAGAAAGATGGTCAAAGCAATATGAAGGACTCCGAACATAGGTTTGTAGGAATCATCAGAGAGCCAAAAGGGGAGTTAAGTAAAGGCAATTGGGAGACAAAACTACTAACAGATGAAGAAGCAATGGAGCAGTTTAGGAAGAAAGAGTTTGACAGCAAATACGAGCGAATGGAGTTCAAGTGTACCAAGTGCTTTAAGGGGTTCTCCAAACATGAGATGCTGCTCAGACACAACAAGATGTGGCATGAAAAGGGTGAGAATGAATGCCGCTTCTGCCACATGCAATTCAAATGGAAGAGTAAACTGCAGGGGCATATGATGAACCACTACTATATATACAAGTGTCTCCGGTGCGGGCTGCAGTTTTACCTCAAGAACGGCGCAGTTTTCCACGACGGCCATCACAACGGAATCATTCACAAATGCAAGCACTGCGGGGAGGAGTACACGCACATATCGACGTACTACACGCACTTGCGCACGTCGCACCGCAATGCGCACGCGTGCAAGCTCTGCGGAGCCACCTTCGTCAGTCAGGCGGGCGTCGTGGTACACATGAAGAGGAAGCATGTCATACCGGACAAGGAGGAACCGAGCACCGACATCTACTGCCAGAAATGTGAGATCTCGTTCGTGTCGCAGAGCGCGTACGACGAACATCTAGCGCAGTCCAAACTACACGAGGAAGAAAACAAGGATTTCAAACGCACCAGACGAAAACGGCGGGAGATCCTAGCGAATGCGACCAGATGCATGCATTGTCACAAACGGTTCAAGTCCAAAACGGATCTGAAGCTGCACATTTCGGAGGAGCACCCCGGACAGAACAAGGTGGAGCGCGTGGTTTGCGAGATCTGCGGGGCCGTGCTCTCGTCGGCGTATATAGAAATCCACATGAACCGTCATACCCGCAAGAAGGTGTATCCGTGTCAAACTTGTGGGAAAGAGTTCCTGTGTGTCACCAGTCACAACACGCACCAGCTgACCCACAGCGGTGAAAAGCCCCACGCCTGTCCGATTTGCCCCAAGCGATTCGGCCTGAAAGGCCACATGGAGGTACATTACAAGCGGGTTCATCTGAAGGAACCTTATCCAAAAAGCGTCCAAAAGCCCAAGTATACGGACTGCCCTGTGTGCCACAAAACCTTCCAATCCAGATCCCACATGGACACGCATCTTCGGAGAGTGCATTTAAAGGAACCTTACCCTAAAAGCGGGCCGAAGCTATGTCCGATATGTAGTAAACCGTTTGCGTACGCGTCAGATATGGACGTGCACTATAGGAGAGTGCATCTCAAAGAACCTTACCCTAAAAGAACCTACAACCGCAAGAACAGAAATCGTCAGGCGGCCGATGTGCCTCTGTTCGCGTCGCTGCCGAAATGA
- Protein Sequence
- MSELKLCRICLNKSTKLYKLNQFNLKLYYEQITQSQVQFKDELPQHFCYECAALLHKYHKFKHKCDFGQTTLKNLLGSGFLTYHVIEDIRKNRTDLHSTLDNISEGCIKRVKTFNVKYKKELEPLEMENVILNPLNVESYNYEFNDLHNDIKSEEDEVTDKKDNIPNKSDLKLLPDLTNLDSDVDFNKTNVLSEANATLTDLGIPMTNIQEPEDSNLYNLLFESDLDDSNDATFSINDIEKSVKIEKRNKKAKKVTKIKKDGQSNMKDSEHRFVGIIREPKGELSKGNWETKLLTDEEAMEQFRKKEFDSKYERMEFKCTKCFKGFSKHEMLLRHNKMWHEKGENECRFCHMQFKWKSKLQGHMMNHYYIYKCLRCGLQFYLKNGAVFHDGHHNGIIHKCKHCGEEYTHISTYYTHLRTSHRNAHACKLCGATFVSQAGVVVHMKRKHVIPDKEEPSTDIYCQKCEISFVSQSAYDEHLAQSKLHEEENKDFKRTRRKRREILANATRCMHCHKRFKSKTDLKLHISEEHPGQNKVERVVCEICGAVLSSAYIEIHMNRHTRKKVYPCQTCGKEFLCVTSHNTHQLTHSGEKPHACPICPKRFGLKGHMEVHYKRVHLKEPYPKSVQKPKYTDCPVCHKTFQSRSHMDTHLRRVHLKEPYPKSGPKLCPICSKPFAYASDMDVHYRRVHLKEPYPKRTYNRKNRNRQAADVPLFASLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -