Vcam023014.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596065.1:8718680-8732780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.03 2.3 9.5 0.6 3 23 48 68 47 68 0.98 2 14 3.5e-07 2.7e-05 25.0 0.6 1 23 104 127 104 127 0.95 3 14 4.9e-06 0.00038 21.4 1.3 1 23 129 151 129 151 0.97 4 14 2.7 2.1e+02 3.3 1.0 1 23 161 183 161 183 0.92 5 14 0.42 32 5.9 0.0 1 23 188 210 188 210 0.96 6 14 8.8 6.8e+02 1.7 2.8 3 23 239 260 238 260 0.88 7 14 0.66 51 5.3 2.8 1 19 267 285 267 287 0.85 8 14 0.017 1.3 10.2 0.2 1 23 295 318 295 318 0.93 9 14 0.0025 0.19 12.9 0.0 2 23 356 379 355 379 0.94 10 14 3.6 2.8e+02 2.9 1.0 3 23 387 407 387 407 0.92 11 14 0.33 26 6.2 0.3 1 20 412 431 412 434 0.90 12 14 0.0025 0.19 12.9 0.9 1 23 440 462 440 462 0.96 13 14 0.0017 0.13 13.4 2.5 1 23 468 490 468 490 0.96 14 14 7.6e-05 0.0059 17.7 0.7 1 23 496 519 496 519 0.97
Sequence Information
- Coding Sequence
- ATGGCCTCATCTACAGCTTCATACATTATCCTAACCAAGGACCTCGCCACTGGCCGAGATGTAGCAACCGAAGTTCCATTAGAGAACTATGAAATTCATATTCCAAAGCAAACTGCTGTTGATAAAATTGGCGGCATCCTGTGCTACATCTGTGATTCGATATTCGGGAATAAGAAGGATTTCCTAAATCATTATAGTACACACAACACTTCAGAAGTAGTGTACACTTGTGTGGTGTGCAAGAAGCAGCATTCTGCATACCCAAACTTCCGAAACCACTGCTACCTTCAGCATATTCTCAAGGATAAGTTTCCATGCCAACAATGCAACAAAAGTTTTTCAAGACAATCCTATCTGACAGCCCATATCATTAACATCCATGACTTCAAGTGCAGTGAATGTGATGAGAAATTCAAAACAAAGAAAGACTTGCAAATCCACAAAATCGTccacaacaaaaaacaaactgaCAACCCCCCTTATAATTGCACTACATGCCAACAAGTATTGTCGAGCATTGATATGTGCGAATCACATATAAATGATCACTGTGAGGTGCTTTACCCTTGTCCGATATGCGCTGACGTTTTCccggataaaaaaaaagcttctttGCATTTGACAATGCATTTTGATGAAAAGGTCACATCTGAGATGGGGTCAGAGTCAAAATCAACGGAAGACAGCTCAATCAACAAGTTAGGAGGCATTCTCTGCTGCCACTGTGATCAGCTATTCAAGACCAGAGTGGACATTGACTCGCACTTTGCCTCGGAGCATGAAGACAAAGTTATTGTATACTCATGTAACATTTGTGAAAAACAGTATACCAAGTACTCATTGTATGGGGATCACTGCTATTTTCATATCATGAAAGATAAATTCCAATGCGATCAATGCAACCGTCTGTTCCCTCGTCTGCCGCTGCTAGTGATGCACACGCTGGCCTTCCATTCGGCCGGCGCCGGCGACAGGCCGTTCCAATGCGACAAGTGCATATATGGATTCCTGAGCCACTACCGTCTCGCGGAGCACAAGCGAATCGTCCACAACGACTACAACGTCAAGTGCCAGATACCCGACTGCACTGCTACATTCAACACGCCATTGGAGCTGATCGCCCACCAGCGCGCGCACGCGTCCAGCCTGGAGAACTGGTGCCGCCAGTGCGGGCTTCAGTTCCCGACGCTGGCTGCGTGCGAGCGCCATCTGGACTTTCACCGACGGAAGCAATACGCGTGTCCGGTGTGCGCGCGCACTTACCGCGAGCGGTACTTCGTGCTGAAACACCTGCCGAAGCACTTTGAAAGCGTGCTGCATATCTGCAAGGTATGCGGCCGATCGTACAGCGCGCGCAACCGCCTCATAGAACATGTGAAGTCCCACGCCGAAGAGAAGAAACATAAATGTGCGCATTGCTCCAAGACATTCCGGCGTCCCGGCGCGCGGGCTCAGCACGAGCAAATACACTTCGGCAACAAGCCCTACCGTTGCTCGGTTTGCCCCAGGACTTTCGCCTCGTACCCCAACTGGACCAAACACCTCACCCGCTCGCACGCCTACGACAAAACCATGATCAAACAGCTCCGGGAAGCCGCCGAAGCCGAGTCCCCGAACAAAACTGAATCCGGCATCGAGTCTGCCAGCTCGGAGATCTCCGATATCTACCCGTTCGACAGCGACGACGATGTGccgaagaagaaaataaaaaaggtgaaCGAAACGAACGCGAAACTGAACGAAACCGTAAACGAAGCTATCTACCGCATCGATGAAGACCTCGAGCGGATCACGTCTCCGGATGAAATCCAGCAAACGTATGAAATAAAACCGACAGATATCTTTAACGATTTCAACGGAATAACCTCTCCGGTGTTGCCCGATCAAATGTCTCCGGTGTTGCCTGATCAAATGTTTAATGCGGAGTTCAATGATGTGGATGACTCGAATGACATAAAGGCCATTGTGGAGCAAATAGACGCGCTGAGTGGAGGGATAGAGATGGCTGAGGAGAGCCAGTTGCAGTTTACTGACATGGTGCCCTTGGAAAGCGTCTATGATACTGGGCCATCATACACCGAAGTGCCCATCCTCCAATACCCACCTGCGGAGTACGGACCAGACTTCCACTCCCTCAGCTCCGAGGCTTTCCACACTCTCAACACAGAAGCATATCACGGTGACAGCGAGCATCTGACCCACATTGATCCAAACCTCACCATAAAAAAGCAGAAGCCAACCAAGCTGTACATACAGAACGTGCAAAGGTATGAGCAGCCGGTCTACGACCAGGGTTGGGAGCCGGTCATATCTAAAGTGCTGTCGTACAACGACACTAATGACAGCCGCATGTATGTGCTCAACGGTAATATATTTTAG
- Protein Sequence
- MASSTASYIILTKDLATGRDVATEVPLENYEIHIPKQTAVDKIGGILCYICDSIFGNKKDFLNHYSTHNTSEVVYTCVVCKKQHSAYPNFRNHCYLQHILKDKFPCQQCNKSFSRQSYLTAHIINIHDFKCSECDEKFKTKKDLQIHKIVHNKKQTDNPPYNCTTCQQVLSSIDMCESHINDHCEVLYPCPICADVFPDKKKASLHLTMHFDEKVTSEMGSESKSTEDSSINKLGGILCCHCDQLFKTRVDIDSHFASEHEDKVIVYSCNICEKQYTKYSLYGDHCYFHIMKDKFQCDQCNRLFPRLPLLVMHTLAFHSAGAGDRPFQCDKCIYGFLSHYRLAEHKRIVHNDYNVKCQIPDCTATFNTPLELIAHQRAHASSLENWCRQCGLQFPTLAACERHLDFHRRKQYACPVCARTYRERYFVLKHLPKHFESVLHICKVCGRSYSARNRLIEHVKSHAEEKKHKCAHCSKTFRRPGARAQHEQIHFGNKPYRCSVCPRTFASYPNWTKHLTRSHAYDKTMIKQLREAAEAESPNKTESGIESASSEISDIYPFDSDDDVPKKKIKKVNETNAKLNETVNEAIYRIDEDLERITSPDEIQQTYEIKPTDIFNDFNGITSPVLPDQMSPVLPDQMFNAEFNDVDDSNDIKAIVEQIDALSGGIEMAEESQLQFTDMVPLESVYDTGPSYTEVPILQYPPAEYGPDFHSLSSEAFHTLNTEAYHGDSEHLTHIDPNLTIKKQKPTKLYIQNVQRYEQPVYDQGWEPVISKVLSYNDTNDSRMYVLNGNIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -