Vcam010566.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596045.1:1454589-1456019[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0084 0.65 11.2 0.1 2 23 163 185 162 185 0.92 2 10 1.6 1.2e+02 4.0 1.9 1 23 191 213 191 214 0.95 3 10 6.3e-05 0.0049 17.9 1.7 1 23 219 241 219 241 0.98 4 10 0.00047 0.037 15.2 0.3 1 20 246 265 246 267 0.92 5 10 0.00012 0.0095 17.0 0.7 2 23 286 308 285 308 0.94 6 10 0.006 0.46 11.7 4.3 1 23 315 338 315 338 0.94 7 10 0.00073 0.057 14.6 6.1 1 23 344 366 344 366 0.96 8 10 0.00061 0.047 14.8 3.1 3 23 374 394 372 394 0.92 9 10 4.5e-05 0.0035 18.4 3.8 1 23 400 422 400 422 0.97 10 10 0.066 5.1 8.4 3.3 1 20 428 447 428 451 0.94
Sequence Information
- Coding Sequence
- ATGAATACCGACAATAGTTACTGCCGACTATGTGCAGAAGCAAAGCACAGGAAGAAACAAGTGGATTTTGACACCAATCCAGAGACGCGACTTGAAACAATAGAGAAATTGAATCGAATAAACGCTCCAACCGAGTTTATCGACAGTAAACTACCGAACACAGTCTGTTTAGACTGCCTACGGTTGCTAGATAAATGCTTTACGTTCGTAGTTGCTATTGAGAGTGCTCAAAACATTCTCAGTGAAATATTCTTTAAACAGAACGTAAAAACAGAGTATCACCCCGATGATGATCGGTCCATTGGCATTGAACACGAAGAGGACGTCTGTGTAGAGATCAAAGCAATCAAAACCGAAGACGAATGTGAGCTCGAAGAAAAATTAAGTTCGACACCCCAAAAACAGCcgaaaaagattaaaaaaagtaCCTCACTAGACTCTCTTCCTATTTCCAAGCTCAAAGAAACTTGGGCTGACTACAACTGGCAATGTGTATACTGTGACGTTCAGTTTCAAAAGTTAGATGACCTGCAAACTCACTTGACGGCTGTTCACAATGTTTGCAACTCATACCGCTGCGTGGATTGCTCTGTCAGCAAACGACGCTTGGACCGATTCTTAATCCATGTTCAAACACACCACAAAGCTCTACGTTACTCATGCTACAAATGTAATGAAAGGTTCAGGACTATATCTGCTATGAGAAAACATCTGATAACCCATCTTGAAACAGAACATAACTGTGTTGGATGCAATATGAGTTTCACATCTAGTGCTCAACTCAAAGAACATAGAGATATGTATTACAAAGAAAGTAAAAAGATTGATATAGCTCAAATGTCATATGATGGAACAACATGCCTTATATGTTCAAAGACTTTCACTAGTAAAGGCAATGTTAAGCTGCACATTGTAAGAATGCACACAGAAAGACCACAGACGCATGTTTGTGAAGTCTGTGGAAAAGCATTCTATGACAAACACAACCATGCTGAACACATGCTTCACGTTCACACTGACTATCGGCCCCACAAATGTCACATCTGCCACCTCGGTTTCAAGACACCCAAAAGTTTAAAAGATCACACTGGACGACACTACAATGAGAAACCACTTGCATGTGAAAAGTGTGGGAAACACTTtagattgaaaaaacatttagcTAAACACAGTGTGATCCACACCGACCAGCTACCATTCCAATGCAGCTTCTGTGACAAGCGTTTTCAACGGAAACAATACTTGACAAACCATTTGCTGCAACATACTGGAGAACGGCCATATTCATGCTCGCCATGCCAACAACATTTTACAGGCTGGGGGAACTATAACAAGCACATGATATGCAGACATAACCAGGACACGGCAAGGAAGAAGGCTGTGTTAGTAGAtgaactatcatcatcatcatcctcaatTAAGCCTGAATAA
- Protein Sequence
- MNTDNSYCRLCAEAKHRKKQVDFDTNPETRLETIEKLNRINAPTEFIDSKLPNTVCLDCLRLLDKCFTFVVAIESAQNILSEIFFKQNVKTEYHPDDDRSIGIEHEEDVCVEIKAIKTEDECELEEKLSSTPQKQPKKIKKSTSLDSLPISKLKETWADYNWQCVYCDVQFQKLDDLQTHLTAVHNVCNSYRCVDCSVSKRRLDRFLIHVQTHHKALRYSCYKCNERFRTISAMRKHLITHLETEHNCVGCNMSFTSSAQLKEHRDMYYKESKKIDIAQMSYDGTTCLICSKTFTSKGNVKLHIVRMHTERPQTHVCEVCGKAFYDKHNHAEHMLHVHTDYRPHKCHICHLGFKTPKSLKDHTGRHYNEKPLACEKCGKHFRLKKHLAKHSVIHTDQLPFQCSFCDKRFQRKQYLTNHLLQHTGERPYSCSPCQQHFTGWGNYNKHMICRHNQDTARKKAVLVDELSSSSSSIKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -