Vcam023139.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:869102-881349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.028 2.1 9.6 1.6 1 23 110 133 110 133 0.96 2 15 0.17 14 7.1 2.7 1 23 165 188 165 188 0.94 3 15 1.7e-05 0.0013 19.7 0.2 2 23 225 247 224 247 0.94 4 15 0.00026 0.02 16.0 2.9 1 23 254 277 254 278 0.93 5 15 0.0085 0.66 11.2 5.1 3 23 284 304 283 304 0.98 6 15 0.0085 0.66 11.2 5.1 3 23 354 374 353 374 0.98 7 15 0.0085 0.66 11.2 5.1 3 23 424 444 423 444 0.98 8 15 0.0085 0.66 11.2 5.1 3 23 494 514 493 514 0.98 9 15 0.0085 0.66 11.2 5.1 3 23 564 584 563 584 0.98 10 15 0.0085 0.66 11.2 5.1 3 23 634 654 633 654 0.98 11 15 0.0085 0.66 11.2 5.1 3 23 704 724 703 724 0.98 12 15 3.6e-05 0.0028 18.7 0.4 1 23 735 758 735 758 0.92 13 15 5.1e-05 0.004 18.2 1.8 1 23 764 787 764 787 0.91 14 15 0.024 1.9 9.8 1.9 2 23 797 818 796 818 0.96 15 15 0.017 1.3 10.3 2.9 2 23 825 847 824 847 0.95
Sequence Information
- Coding Sequence
- ATGGAACTGGATTCTGATATCGAAAACGATTTGCCCCTGTCTGTAGTTTGTAGGAAAGAAACAGGAACAGACGCAACAGATGATAATCATAAAGAAACAATCGGGGTATACGATTTAAGTACAGAGTTGGAAGAAGAAAGAGTTTTATCTAAAAAGGTTGCTCGCTCTGaactgaaaaagaaaaagaagccTGTGATAACGCAACCCAATCGCTTACCTGTTGATGACAAATATCAAGGTAAAATTATGGTGTACATTTTGAGTAGGGCGGAGTTGGAAGAAGAGAGGGAGAGAGAATCTAAGAAGGAGTCTTATTTGAAATTGCCTCACAAATGTGAAAGTTGCGTCAGAGGGTTCGATTATGAGAATACTTTGAGAAATCATATCGAGAAGCAACACACAATGAAAAAAGGCGGAACGCAGTGTGATGTTTGCAAAGTGATCCTCGGCCCAGCCTCCAGCAAGGAGCATCAGAGACGGCACTACAGGCGGTTCCAGTGTGTGGTCTGCGGCTGTCGCTCTCGGAACGTCTACTCGCTGTCGCAACACTTCAACCAACAGCACGCGGAGCGGGGACTCATCACGCACCAGTTCCATTGCGAGCTTTGCGACTTCACTACACTATCGAATCGCGTGTACCGCTACCATCGCGACAAGCACACCAGCCAGCTCCAATGCACCGAGTGCGGGCACACGTTCGCCAACGCGTCGTCTCTCAACGTGCACGTTCTTAACGTGCACAAGAATCCATCCCGAATGTACACGTGCGAGTCGTGCGACAAGTCGTACCGCACCAAGTCGGGGCTGCACTCGCACCGCGCCGCCGTGCACCACCGCCGCGGTGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAATGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAAGTGAGTCACACTCGCACCACCGCCGCGGCGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACGCACTCCAAGCACGTCGCCTCGACCGACACCAATGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAAGTGAGTCACACTCGCACCACCGCCGCGGCGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACGCACTCCAAGCACGTCGCCTCGACCGACACCAATGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAAGTGAGTCACACTCGCACCACCGCCGCGGCGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACGCACTCCAAGCACGTCGCCTCGACCGACACCAATGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACGCACTCCAAGCACGTCGCCTCGACCGACACCAAGTGAGTCACACTCGCACCACCGCCGCGGCGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACGCACTCCAAGCACGTCGCCTCGACCGACACCAATGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAAGTGAGTCACACTCGCACCACCGCCGCGGCGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAATGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAAGTGAGTCACACTCGCACCACCGCCGCGGCGCGTTCTGCTCGCAGTGCCACTCGCACTTCTCGTCACCCGCGGGACTCGCGCACCATCTGCGTACTCACTCCAAGCACGTCGCCTCGACCGACACCAAGTATCAGTGCGACTTGTGTTCCAAAACGTTCATATCGAAGAGAATGCTCCAAACGCACATCGGCTGGGATCACCTGAAAACGGTCAAGTACGAGTGCTCCAAATGCTCGAAGACGTTCAAGTCGGCGGGCACGCTGCGGAAACACAACAGTTACGTCCATGAGAAGAAACGTCCCGCCAGAGACAAGATGTGCGATTACTGCGGCCGGGGGTTCACGACCACCGCCATCTTGCGCTGTCATATCCGCACGCACACCGGCGCGCGGCCGCTGCAATGCGTCCACTGCAGTGCGACCTTCGCGCACTCCGCCTCGCTCTATACTCACACTAAACTAAAACACAATAACACTAAACACATGACACCATAA
- Protein Sequence
- MELDSDIENDLPLSVVCRKETGTDATDDNHKETIGVYDLSTELEEERVLSKKVARSELKKKKKPVITQPNRLPVDDKYQGKIMVYILSRAELEEERERESKKESYLKLPHKCESCVRGFDYENTLRNHIEKQHTMKKGGTQCDVCKVILGPASSKEHQRRHYRRFQCVVCGCRSRNVYSLSQHFNQQHAERGLITHQFHCELCDFTTLSNRVYRYHRDKHTSQLQCTECGHTFANASSLNVHVLNVHKNPSRMYTCESCDKSYRTKSGLHSHRAAVHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTNATRTSRHPRDSRTICVLTPSTSPRPTPSESHSHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTNATRTSRHPRDSRTICVLTPSTSPRPTPSESHSHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTNATRTSRHPRDSRTICVLTPSTSPRPTPSESHSHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTNATRTSRHPRDSRTICVRTPSTSPRPTPSESHSHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTNATRTSRHPRDSRTICVLTPSTSPRPTPSESHSHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTNATRTSRHPRDSRTICVLTPSTSPRPTPSESHSHHRRGAFCSQCHSHFSSPAGLAHHLRTHSKHVASTDTKYQCDLCSKTFISKRMLQTHIGWDHLKTVKYECSKCSKTFKSAGTLRKHNSYVHEKKRPARDKMCDYCGRGFTTTAILRCHIRTHTGARPLQCVHCSATFAHSASLYTHTKLKHNNTKHMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -