Vcam023365.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- zfy1
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:3971541-3988777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.29 23 6.4 2.0 1 23 257 280 257 280 0.94 2 11 0.0012 0.094 13.9 0.8 1 23 287 309 287 309 0.98 3 11 0.27 21 6.5 2.6 1 23 313 336 313 336 0.92 4 11 0.48 37 5.7 0.8 1 23 343 365 343 365 0.83 5 11 3.1e-05 0.0024 18.9 1.0 2 23 370 392 369 392 0.95 6 11 4.1e-05 0.0032 18.5 0.5 1 23 398 420 398 420 0.97 7 11 0.01 0.81 10.9 0.5 2 20 431 449 431 451 0.94 8 11 0.00022 0.017 16.2 1.3 1 23 463 486 463 486 0.94 9 11 0.011 0.88 10.8 1.4 1 23 491 514 491 514 0.97 10 11 8.3e-07 6.4e-05 23.8 3.3 2 23 522 543 521 543 0.97 11 11 2.4e-06 0.00018 22.4 1.3 1 23 549 572 549 572 0.95
Sequence Information
- Coding Sequence
- ATGGATCAAAAGGAGCAGGTATCTTACAAATTGCTGTGCAACGCATGTCTATGTGTCGGTCAAGGACTCAACCTGATAACTGACGTGAAGCTGAAGCGGTTCTATGTTGATGCCCTGAATGAGATTCCAGTTTGTAGCATGGCGGACATTACACCGGTACTATGCTGGGATTGTAAAGCCCTATTGCGCAGAGCTCTTCAGTTCAAGGAACAAGTGAAAAACTCATATGAAACATTGCTGGCTTATTCCACCGAGAATCTCAATTGCATAACAGACATGGCGCACTCACCACGGCTGGTGGTTAAAAACAATGACACCATCACCATTTCGCCAGATATTTGTGTGGAAAGTGAGAATGAAGCAATGGAATATGTCAAGAATGAACTGAAGACTGACATGGATTGGGATAATAGAGGTCTACACAAAGTGACAGAATCATTGGTTGTTCACCCTAAAAAACCTCAAGAAGTCTATTTAAAAGACCCAAAGATAGAATATAATAGAGATGCACCCGATTCAGACACTAACGCAGATTCGTACGAACCAGAGGTTTTAGTCGTACATGATCAGATCAGAAAGCGGAAAAAGACCAAAAAAGCGGGCAAAACCAAAGGTATCAAAGAAAGAGTAAAGAAAGCTAAGACACGAATCGAAGTTAATaaaaaatcCTCAGTATGCAAGAAAATCCTGACCATAGAGTTATCATATGAAGAGATGATGGCCGAGAGAGACAAAGAATCAACCAAGGACGCGTATATCAAGTCTGAGTATAAATGTGACACGTGTATAGTGGGATTCAACTATCAGAAGTCATTTAAAACTCATTTAACTCTAAAACACTCTGTTAACATAGGTGAATACAGTTGTCCAGTCTGTAAGACATATTATGCGTCTGTAGACTCTTTCACAGCGCATTACAAACGCCATATGAGAAGGTATGAATGCAGCATTTGCCACAAACGTACTATGGATTTAAAGGTTATGCAGCAACATTACTACTCAACTCACGAGATATCTCTCAAAGAGTACGAATGCGGTATCTGCGGGAAGATAtctaaTTCCATAGACACTCACAGATACCACCGAGAAAGTCACAAGGCTAGGCTTCAGTGCCCGCAGTGTGAAAAAACCTTCAGACACCGCGCCGGTTTGCTCAACCATAGATTGTCGGTTCacgaatataaaaacaaatttccCTGTCCAGTATGTAATAAAGTTTTCAAATGGCGAACCAGTCTGAGAAGGCATCAGGTTTCTCACGAGAATAAGAAGCCCgtagcggcggcggcgtacTGTACACTCTGTGGAGTTAACTTTGCGTCTTTATGTTCATACCAACGGCACATGGCCAACAGTCTGAAGCACATCACTAAAGACCAACTCAGgtTTATTTGTGACCATTGCAACATAAAGTTCGCAGACAAGACCAAACTACGCGATCACATTGAAGAGAAACATCTACATAAGACCTTTCAGTGTCACATTTGTATGAAgACATCTAAGAACCGAGTCGGGTTGGACCAACACGTCCGTAACGTGCACAAAGGCAGACCCAACAACAAAATGTGCCATCATTGTGGAAAGGGATTTCCGACAAAAGTGCAGCTCGAGTCTCACATACGCACTCATACCGGCGAGCGGCCTTTCATATGCGAATACTGTCCGACCACATTCTCACAGCAATCCAACTTGTATAAACACAACCGCCAGgtGCATCTAAACATGAAATCAAAACGATACCCGGCATGTAAGAAAAGGATCGACGAAGTGACTCCACAAGTGAATACTAATACTATACCCGCTGTTAGCCAGACGGCTATGTCGGTTGTACTGCATTACTCGGCGGAAACAGGCTTCCTTACAGCAGAGTTGTAG
- Protein Sequence
- MDQKEQVSYKLLCNACLCVGQGLNLITDVKLKRFYVDALNEIPVCSMADITPVLCWDCKALLRRALQFKEQVKNSYETLLAYSTENLNCITDMAHSPRLVVKNNDTITISPDICVESENEAMEYVKNELKTDMDWDNRGLHKVTESLVVHPKKPQEVYLKDPKIEYNRDAPDSDTNADSYEPEVLVVHDQIRKRKKTKKAGKTKGIKERVKKAKTRIEVNKKSSVCKKILTIELSYEEMMAERDKESTKDAYIKSEYKCDTCIVGFNYQKSFKTHLTLKHSVNIGEYSCPVCKTYYASVDSFTAHYKRHMRRYECSICHKRTMDLKVMQQHYYSTHEISLKEYECGICGKISNSIDTHRYHRESHKARLQCPQCEKTFRHRAGLLNHRLSVHEYKNKFPCPVCNKVFKWRTSLRRHQVSHENKKPVAAAAYCTLCGVNFASLCSYQRHMANSLKHITKDQLRFICDHCNIKFADKTKLRDHIEEKHLHKTFQCHICMKTSKNRVGLDQHVRNVHKGRPNNKMCHHCGKGFPTKVQLESHIRTHTGERPFICEYCPTTFSQQSNLYKHNRQVHLNMKSKRYPACKKRIDEVTPQVNTNTIPAVSQTAMSVVLHYSAETGFLTAEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -