Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596047.1:12722765-12741934[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.47 37 5.7 0.6 3 20 8 26 6 28 0.86

2 11 0.17 13 7.1 0.3 1 12 189 200 189 209 0.90

3 11 0.00069 0.054 14.6 1.8 1 23 348 370 348 370 0.97

4 11 0.0018 0.14 13.3 2.5 1 23 386 408 386 408 0.98

5 11 1.8e-06 0.00014 22.8 0.6 2 23 457 478 456 478 0.96

6 11 0.00096 0.074 14.2 2.0 1 23 494 516 494 516 0.98

7 11 1.5e-06 0.00012 23.0 4.6 1 23 522 544 522 544 0.98

8 11 0.047 3.6 8.9 9.0 1 23 550 572 550 572 0.97

9 11 1.9e-06 0.00015 22.7 0.4 1 23 578 600 578 600 0.98

10 11 0.05 3.9 8.8 0.2 1 23 604 626 604 626 0.94

11 11 8.7e-05 0.0067 17.5 0.2 1 23 634 657 634 657 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.47	37	5.7	0.6	3	20	8	26	6	28	0.86
2	11	0.17	13	7.1	0.3	1	12	189	200	189	209	0.90
3	11	0.00069	0.054	14.6	1.8	1	23	348	370	348	370	0.97
4	11	0.0018	0.14	13.3	2.5	1	23	386	408	386	408	0.98
5	11	1.8e-06	0.00014	22.8	0.6	2	23	457	478	456	478	0.96
6	11	0.00096	0.074	14.2	2.0	1	23	494	516	494	516	0.98
7	11	1.5e-06	0.00012	23.0	4.6	1	23	522	544	522	544	0.98
8	11	0.047	3.6	8.9	9.0	1	23	550	572	550	572	0.97
9	11	1.9e-06	0.00015	22.7	0.4	1	23	578	600	578	600	0.98
10	11	0.05	3.9	8.8	0.2	1	23	604	626	604	626	0.94
11	11	8.7e-05	0.0067	17.5	0.2	1	23	634	657	634	657	0.96

Sequence Information

Coding Sequence: ATGGGAGATGTAGTAATCAGATGTCCACTATGCTGCAACAACACTTTTAATTCAAAAGAATTACTAATACAGCACCTTAGTAACATTATTGGAAACTTGTTCTGTCCCGTTTGTACTAGTAAATGGGCATCAGTAGCCCAACTTATGACACATTTGAGCCAGGATAATTGCTCACAGTTACACAATGCTCCACTGAGAACAATTCTTCTGGAGAAAACTTCTGAACAAGATACTgctgaaattgaaattaataattcTGACTTATTACAATTCAAAAATGGTACCTCTCTTCCCATTGAAAATCTCGAAACCACTGATGATGTGACTAGTATGTATGCAGAACTAATGAAGCCAACACTTCAGTCAGATTTGGAATTCATGAAGGATGGTGACAGCCAGTATGTGATCATAGCTCAGGATCaggatggcacagttgtgaccAAACAGAACAATGATGGGACTATATCATTGACTGCCATAAATGATTCAGAAATGAAATTTGAATCCAATGAGTATGTAACTCCTGACACACCTGGTTCCCCTGAGGAAAGCCAGGAGGCATTGTACAGCTGTAACACCTGTGGAGTATCATTCACCTCTGTTATAGACCACATACAGAACTATCACAATGATCAGGATGTTGTAGTTGAGGAACCAATTGATGAGGTAGATGATCCAACCCCCTTGGAATACGAGAGCGTGGTGTTGCCGACTGACAAACAAACGTCGAGGCGTGTTATCACAGAAACAGGCGTTATTGTCGAAACGCCGCTCAAAGAAACTGGGAGCGTGCAAGATAAGGGACAAGACAGACTGCAGAGCACCGGCCCAAAGCGATATTTGCGCTTGAATAATATCTGCGACAGCGTCATCAGAAATCTAAAACAGGACAGCAACAAAAGCAACCCAAGCCACAAAGTCCTCGTCAAAGAGGTGCTCACGAAGGAGGGCGAGCTCGTCAAGTATTATCACTGCATCTACTGCAACTTGAATGTCACTTCGCTGGACAACATCAAAAACCAGCCTTGTAAAAGTTCGAAACACTCATGTCTTCAGTGTCCCGTATCGTACGACAACGCGAAATCCTTATGTGCCCACATGAAGGTGCATAAAGTTAAGAATACAGcaGTTAAGGAATCATCAATTCTAGAGTCGTTCGAATGTGAGATTTGCTGCACGGTGTTTCCTACCAACAAGTCTCTGAAACTACACAAACGGATGCACGATCCCATAAAGTCGCGTCAGATAGAAGCCCCTAGAAACTCCAGCTTCTCGGAAATGCGGTACCTGTGCACGATCTGCCAGAAGATGATACCGATCGATTACAGGAAGATACATGAGAACTCGCACGTGGACGCGGAAACGCTCAATTGTGGGATTTGCAACAAGAAATTCACATCCAAGGACTATTTGGAAATGCATATGAATGTACATAATATGGATAAGGCCAAGCCAAGTAAGCAAGACTTATCATTGCCGTACACCTGTCTTTACTGCGAGCGAAGGTTCGCTAGACCACACGAAAAGGTTAAACACGAAAGGATACATACAGGTGAAAAGCCGCATTCGTGCGACATTTGCGGCAAGTCGTTCCGTGTGTCGTACTGCCTCACGCTGCACATGCGGACGCACACCGGCGCGCGCCCCTACTGCTGTGCGCACTGCGGGAAAAGGTTTAAAGCGCACAGTGTGTACAACCACCACCTACTGACGCATTCGGAGGTGCGCGCCTACAAATGCCCTTACTGCCCGAAAGCCTTCAAGACGTCTGTCCAGCTCGCCGGACATAAGAACTCTCACACCAAGCCGTTTTCATGCATACAATGTAACAGGCCGTTCGCGTCTCTATACGCGGTCCGCGTTCACACCGAGACGCATTCCCGCCAGAACAACCTGAAGTTCTCGTGCTCGCTGTGCGGCGCGAGCTACGCGCGGGCGTTCGCGCTCAAGGACCACATGAAGCAACTGCACAAGGATCACATCAAGTCTGAGAACGTGAGAGAGGAATGGGTGCGCGAAGACCCCGATTGTAACGCGGACGATATCAAAACGATTCAGAATTTCGAGAAAAACACAAACATGGTGCAGTTGGAAATCCCAGCAGATGAATTGATTATTCCTAATTAG
Protein Sequence: MGDVVIRCPLCCNNTFNSKELLIQHLSNIIGNLFCPVCTSKWASVAQLMTHLSQDNCSQLHNAPLRTILLEKTSEQDTAEIEINNSDLLQFKNGTSLPIENLETTDDVTSMYAELMKPTLQSDLEFMKDGDSQYVIIAQDQDGTVVTKQNNDGTISLTAINDSEMKFESNEYVTPDTPGSPEESQEALYSCNTCGVSFTSVIDHIQNYHNDQDVVVEEPIDEVDDPTPLEYESVVLPTDKQTSRRVITETGVIVETPLKETGSVQDKGQDRLQSTGPKRYLRLNNICDSVIRNLKQDSNKSNPSHKVLVKEVLTKEGELVKYYHCIYCNLNVTSLDNIKNQPCKSSKHSCLQCPVSYDNAKSLCAHMKVHKVKNTAVKESSILESFECEICCTVFPTNKSLKLHKRMHDPIKSRQIEAPRNSSFSEMRYLCTICQKMIPIDYRKIHENSHVDAETLNCGICNKKFTSKDYLEMHMNVHNMDKAKPSKQDLSLPYTCLYCERRFARPHEKVKHERIHTGEKPHSCDICGKSFRVSYCLTLHMRTHTGARPYCCAHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCIQCNRPFASLYAVRVHTETHSRQNNLKFSCSLCGASYARAFALKDHMKQLHKDHIKSENVREEWVREDPDCNADDIKTIQNFEKNTNMVQLEIPADELIIPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -