Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596063.1:7381984-7389401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0045 0.35 12.1 0.6 1 23 305 327 305 327 0.98

2 10 0.00096 0.074 14.2 1.0 2 23 352 374 351 374 0.94

3 10 0.013 1 10.6 0.5 2 23 397 419 396 419 0.89

4 10 1.9e-05 0.0015 19.5 0.5 1 23 423 445 423 445 0.97

5 10 0.00064 0.049 14.7 2.8 1 23 450 472 450 472 0.98

6 10 0.023 1.8 9.8 1.9 2 23 480 502 479 502 0.95

7 10 3e-06 0.00023 22.1 0.6 1 23 507 530 507 530 0.97

8 10 2.9e-05 0.0023 18.9 0.7 1 23 536 560 536 560 0.98

9 10 0.00095 0.073 14.2 0.4 1 23 566 589 566 589 0.93

10 10 0.00013 0.01 16.9 2.2 1 23 594 617 594 617 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0045	0.35	12.1	0.6	1	23	305	327	305	327	0.98
2	10	0.00096	0.074	14.2	1.0	2	23	352	374	351	374	0.94
3	10	0.013	1	10.6	0.5	2	23	397	419	396	419	0.89
4	10	1.9e-05	0.0015	19.5	0.5	1	23	423	445	423	445	0.97
5	10	0.00064	0.049	14.7	2.8	1	23	450	472	450	472	0.98
6	10	0.023	1.8	9.8	1.9	2	23	480	502	479	502	0.95
7	10	3e-06	0.00023	22.1	0.6	1	23	507	530	507	530	0.97
8	10	2.9e-05	0.0023	18.9	0.7	1	23	536	560	536	560	0.98
9	10	0.00095	0.073	14.2	0.4	1	23	566	589	566	589	0.93
10	10	0.00013	0.01	16.9	2.2	1	23	594	617	594	617	0.95

Sequence Information

Coding Sequence: ATGGCAGAAACGTTAGAAATAGATACATTTTTCGGGAAGTGCAAATGCTGCCTGAAGTATGGTTACCTTAAAACTATGTGGGAGCCGCATGTTGTAAATGAAGAAGATGAAATCTATGGGCAAATGCTCACTCAATGTTTCTCCATCACGtggACTATACAGGGCTCTGAAAAAGATGACCAAATTTGTGAGGACTGCATATGGAAGGTCCGAGAGGCGTTTCTGTTCAAGAAACAGGTTCTGAATTGTCAAGGAATTCTGGAAAATGGAGAAGATGGTTCAGAGTTGAAAGATGAGTCATACGCTGCAGAATATTTGGATGAAGAAATCCTGGATAAGAATGAGTATTCAGATGATGATATTAATGAAAGTTTAGACAGAGGAAGCGATGACGAAAGGGAAAAAACCgacgatgaagatgatgatgatgatgatgaaaatcgATACAGTATAACTTTTAGTGAGAATGAAGAGCAATGTGATGAGAATCAAAATCCAGAAGATGAAGACGATGATGATGATGAAGGCTCATCCATTATTACCAGGAAACGCAAGCCGGCACAGATTGATACAGAATCTGATACCGACGCTCCTAAACCAAAATGGCCAAAGAAGTTGTCTAAAGAGGAACGGTGGAAAACATACAAACAGTACACTGAGGAGACATTGCAGCAAGCTGTCAAGTCCGTGACCAGCAAGAAGATGAACCAAAAACAAGCTTCGAAGCTTTTCAAAGTGCCGAGGAAGACTCTGAGCGCTGAGATAAGGGCTATCCGCGATGCCCCGCACACACCAGAGGTTGAGCCGGACCAAATACCAGACGTTCACGTGCTAAGGAAGCACAGAGAGAATATACGAACGGTTCTCGAGTATTCCAACGCCACCCCGATCCGCGGGTACTGGGGCGGCGGGTACGTGTGCGCGTTCTGCCCGAAGCAATTCTTACACGCGCCCGATTTGAAAGCGCACACCAAATCGCACGGAAACATATCGCAAGAGTACACGGTCGCCAACACGCGGAAGCACACCACCAGGCTCGATATCACCGAGCTCAAATGCAAAACTTGCGGCACCAAGTTCGACGATCTGCAGTCGCTGATGTACCATCTGAAAGACCAGCACGACTTACCGATGCATTTCGATATCGATAACCATTTGATGCCGTTCAAGTTCAATAGCAAGCAATTGCAATGTGCGATATGTAGGAAGCCGTTCACTCACTTCAAAGGGCTGTCGGAACACGTGGCCGATACTCACGTGAGGAACTACGTGTGCGTGGTGTGCGATCGAGGCTTCGTGAATCGATCTCACCTGAGCGCGCACAGAGACTCGCACAGGAACGGCTTGTTCAAATGCGAGTATTGCAGCAAAGCCTTCGACACTCGACGAAAGCAAAAATCCCACGAGCGCATCCACATCGTCCCGACCAAATCTGTGAAATGCAGACACTGCGAGAAGCGATTTGTCAACGAAGCTCAGAGGAGTAACCACGAGCAGAGAGCGCATATGCGCCAGGCTTTCAGTTGCAACGCATGCGACAAAAGCTTCGCACGGCAACGGGCGTTGCGCGCGCATCAACAGAAAGAACATTCATCATTCCGCCCGTATAAATGCCCTGAAAAGGGGTGCGATAAGTCGTTTTACTTGAACAGAACGCTGCAGTCACATATTCTGTCACACGACGAGGCTAGGCCGTACTTGTGTGAGGTGTGCCAAAGAAGCTACCGCGACGCGCGCCGGCTGAAAGACCACATGACGCTAGCGCATAGCCAGCGTGAGTTCAAGTGCAAACAGTGCTTAAAGCGCTACGTTAGCGAAGATAATTTGAAGCGACATGTTAAGGACAAGCATTAG
Protein Sequence: MAETLEIDTFFGKCKCCLKYGYLKTMWEPHVVNEEDEIYGQMLTQCFSITWTIQGSEKDDQICEDCIWKVREAFLFKKQVLNCQGILENGEDGSELKDESYAAEYLDEEILDKNEYSDDDINESLDRGSDDEREKTDDEDDDDDDENRYSITFSENEEQCDENQNPEDEDDDDDEGSSIITRKRKPAQIDTESDTDAPKPKWPKKLSKEERWKTYKQYTEETLQQAVKSVTSKKMNQKQASKLFKVPRKTLSAEIRAIRDAPHTPEVEPDQIPDVHVLRKHRENIRTVLEYSNATPIRGYWGGGYVCAFCPKQFLHAPDLKAHTKSHGNISQEYTVANTRKHTTRLDITELKCKTCGTKFDDLQSLMYHLKDQHDLPMHFDIDNHLMPFKFNSKQLQCAICRKPFTHFKGLSEHVADTHVRNYVCVVCDRGFVNRSHLSAHRDSHRNGLFKCEYCSKAFDTRRKQKSHERIHIVPTKSVKCRHCEKRFVNEAQRSNHEQRAHMRQAFSCNACDKSFARQRALRAHQQKEHSSFRPYKCPEKGCDKSFYLNRTLQSHILSHDEARPYLCEVCQRSYRDARRLKDHMTLAHSQREFKCKQCLKRYVSEDNLKRHVKDKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01509538;
90% Identity: iTF_01509538;
80% Identity: iTF_01509538;