Vcam014128.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596050.1:1031873-1034939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.55 43 5.5 0.9 1 23 240 263 240 263 0.93 2 17 0.0013 0.1 13.7 2.2 1 23 268 291 268 291 0.94 3 17 9.1e-05 0.007 17.4 0.4 1 23 321 344 321 344 0.96 4 17 0.025 1.9 9.7 1.2 5 23 408 427 405 427 0.92 5 17 3.8e-05 0.003 18.6 1.2 1 23 433 456 433 456 0.96 6 17 0.22 17 6.8 0.8 2 22 460 480 459 480 0.92 7 17 0.01 0.79 11.0 0.2 1 23 488 511 488 511 0.92 8 17 0.00061 0.047 14.8 0.1 1 23 516 539 516 539 0.94 9 17 0.0067 0.52 11.5 0.2 2 23 552 573 551 573 0.96 10 17 0.00015 0.012 16.7 1.4 1 23 579 601 579 601 0.97 11 17 3.8 3e+02 2.9 0.4 3 14 608 619 607 624 0.83 12 17 9.9e-06 0.00076 20.4 2.4 3 23 639 659 638 659 0.98 13 17 0.51 39 5.6 0.5 2 23 665 686 664 686 0.84 14 17 0.0077 0.59 11.3 0.2 2 23 702 724 701 724 0.96 15 17 0.00082 0.063 14.4 4.2 1 23 730 752 730 752 0.98 16 17 0.00029 0.023 15.8 4.9 3 23 760 780 758 780 0.97 17 17 0.016 1.2 10.3 2.2 1 23 786 809 786 809 0.96
Sequence Information
- Coding Sequence
- ATGGGTAGTACACAGAAAGAACTGGTAAACATAGAATGGCTCAAAACGCGTATGACAACAGTTTGGACATCGACTGAATACTGTGCCCTTTgcctgtccactgctggagaaTTCATCAGTCTTAGCATGGAGCTATCGGGGAGTGAGGAATCCGCGTCGAAGCCACTTAAAGACGTGGTGAATTATGTGTTCAATTTTGTTATTGATGACTTGATGCCTTGTGAGAAAATATGTGAGTGTTGTGCAGAAAAAACCATTCAAGCATACCTTTTTATAACAAATACTAAGAAATTGTTCCACATCCTGGACAGCTGTACCAGTGATATGTTCTCTAAAGTTGATGATCTTAACAACACACTAAACAAAGATGAGGGCTATGAAAATGCAAATGTAATGATTGTTGTTGAATACGACAGCAACACATTTAGAGACATTGCCGAGCTAGTATCAAGTACCAATGCAGTATTGACTGATAAACTGACTTCAGAAGACAAAGAACCTGCACAAACTCAAAATATTGCATCTGtggaaaacaaagaaaataaagtaCTAGTGGCACCTACCCCGAGAATTGTTAAACATCCacgaacaaataaaaattcagaaaaaagagtaaaaaatattgattctgTGTCCGTTGCAAAAGTATCATCCCAAGGAGGAAACATTGTCATAGAACCTATCTCAAACGCTCAGGTAGCCCCGAGATTTACCACATACGCTTGTAGCTCCTGCTCAGATATCTTCACAACTTACCGAACTTTGAAAGAGCATGAAAAAGCAAAGCATAACTCCGTAATCTATAAATGCAGGTATTGCAAGAAAGTCTACAATACACAGCAGTATTTAGATGTTCACTAtgtatcatcacacaaaagagCTCGGTGCAGATACTGCCATGATGTGATAGAAGCTGAAAAACTTAATATGCACTTGAAAGATAAGCATTTGCAAAGAGTGTACAGCTGCCCTGAGTGTAACTTGGTGTATTACACTCAAGAAAAACTGAATACCCATTTGAAAGCAAGTCATTCAGTTCTAAATGTCAACAGTGATCACCAGTGTGTAATGTGCCTTAAATCTTTGAGAGAGAATGAAGTTAACACTCATAAGTGTAAGTTTTCATGCTTAGAATGTCCGACTGTCCCGTGTATTCATTACAGCTACCTCATGTCTTTTAGAGATCAGATCTTAAACCATTCCGGAGTGATACACTGCATTGATTGTGATTTCACAACTAAAAGAAAGGAACAGCTCATTGCTCATGTTAATCGTGAACATTTAGACTATCATCCGTTCACGTGCAGCGATTGTGGAACACAGTTCTACACGAAGCAAGCTCTTAAATTGCATATAATGCAGTTTCATCAAGATATGAAATGCCAATACTGTGATTCACAGTTCAAGAATTCAAACATCTTGAGAAGTCATCGGCTTACCTGCAAGTCTGTTGCAAGAATGTATGACTGTGAGAAGTGTGTGGCTTCCTTTGATACTTCTGAAGAGCTTGAGAGTCATAACAAGGCCAATCACTCGGAGTTTGTCTATGCATGCTCTCtttgcaataaagaattttctacAGAAGATGATTTAGATGAACACAAGGCCAGAGTACATAGTGGAATCCAATACAAGAAACgcagaaaaataattgaatgcacCATTTGTAATATAACATTCAAAAACATAAACGAAATGCTTGAACATGAGAAATCACATGCTTCAGATGAAATATTCCCCTGCAAAGATTGCCCGAagacattttcaaatttgaaacaAATCTACATTCACAAGCAGAAACATTACTCTCAACAAAAACATTGCCCAGGTTGTAACAAACCAGTAGCCACTTCCTCTTTCACTCAGCACAAAGCGTTATGCTTTCGTTTGAAGCACAAACAATATAAGAATGCATGTAAAGAGTGTGGTAAAAGTTTCCATCTAAAATCCAGTTTAAAAGCTCATCAGCGACTCCACAAAGCGGCACCAGATCCATGCCCTCATTGCGGCAAACTAATTAAGCCATCATCAATGAAAAGCCACCTTGAGTTGAAACATGCTGCATACGCAACTCTAGATGAATCTGTGAAAGCTCAGCTCATGAAATGTCCAGATTGTGAGTATGTGGCCAGAAAAAAAGTCGATTTTGAGAATCATGTCAACAAAATCCATCTAAAAATCAAGCCCTACCACTGCGACTTATGCAGTAGAGAATTCTGTGGTAAGTCTAGACTTGCCGAGCACATGAGAACACATACATCCAGTAATACATGTTTATGTCCATTCTGCGGCAAGAAATTTGCTAACAAGGTTTGTCTTAAAATGCATGTCCGTAGACATACGAACGAAAATCCATATGAATGTAATATCTGCTATGAGAAATTCCGGTCATCGAGCATCATGAAGACTCATCGGCTAAAGAAGCATCAGGACAAGACGATAGCTTGTCCCATATGTGATGCCATGTACCATTTAGTGGCGGAGATGAGGTTCCATGTAAAGAAGGTGCATTGGAAGAGTCCGGAGCCATTTGATTATAAGAAGCTAGTAAGCAAGGAGTTCTATCATCTGTTTCATGATAGGAGATTGCAGAAGTTGGGTGACGATTCCATTTTAGCTGACAATAAGGAATACATTGTTTGTAATTGGTGA
- Protein Sequence
- MGSTQKELVNIEWLKTRMTTVWTSTEYCALCLSTAGEFISLSMELSGSEESASKPLKDVVNYVFNFVIDDLMPCEKICECCAEKTIQAYLFITNTKKLFHILDSCTSDMFSKVDDLNNTLNKDEGYENANVMIVVEYDSNTFRDIAELVSSTNAVLTDKLTSEDKEPAQTQNIASVENKENKVLVAPTPRIVKHPRTNKNSEKRVKNIDSVSVAKVSSQGGNIVIEPISNAQVAPRFTTYACSSCSDIFTTYRTLKEHEKAKHNSVIYKCRYCKKVYNTQQYLDVHYVSSHKRARCRYCHDVIEAEKLNMHLKDKHLQRVYSCPECNLVYYTQEKLNTHLKASHSVLNVNSDHQCVMCLKSLRENEVNTHKCKFSCLECPTVPCIHYSYLMSFRDQILNHSGVIHCIDCDFTTKRKEQLIAHVNREHLDYHPFTCSDCGTQFYTKQALKLHIMQFHQDMKCQYCDSQFKNSNILRSHRLTCKSVARMYDCEKCVASFDTSEELESHNKANHSEFVYACSLCNKEFSTEDDLDEHKARVHSGIQYKKRRKIIECTICNITFKNINEMLEHEKSHASDEIFPCKDCPKTFSNLKQIYIHKQKHYSQQKHCPGCNKPVATSSFTQHKALCFRLKHKQYKNACKECGKSFHLKSSLKAHQRLHKAAPDPCPHCGKLIKPSSMKSHLELKHAAYATLDESVKAQLMKCPDCEYVARKKVDFENHVNKIHLKIKPYHCDLCSREFCGKSRLAEHMRTHTSSNTCLCPFCGKKFANKVCLKMHVRRHTNENPYECNICYEKFRSSSIMKTHRLKKHQDKTIACPICDAMYHLVAEMRFHVKKVHWKSPEPFDYKKLVSKEFYHLFHDRRLQKLGDDSILADNKEYIVCNW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -