Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596069.1:1701018-1717975[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.025 1.9 9.7 0.2 3 23 125 146 124 146 0.95

2 17 0.51 39 5.6 0.4 2 23 392 414 391 414 0.96

3 17 0.006 0.47 11.7 0.1 1 20 422 441 422 443 0.94

4 17 0.0058 0.45 11.7 0.6 2 23 453 474 452 474 0.94

5 17 4.1 3.2e+02 2.8 0.3 1 10 490 499 490 513 0.82

6 17 0.0003 0.023 15.8 1.6 1 23 522 545 522 545 0.98

7 17 0.013 1 10.6 1.3 1 23 622 645 622 645 0.84

8 17 0.35 27 6.1 0.4 1 23 650 673 650 673 0.94

9 17 0.00023 0.018 16.1 3.2 1 23 679 701 679 701 0.97

10 17 6.7e-06 0.00052 21.0 2.2 1 23 708 730 708 730 0.98

11 17 3.9e-05 0.003 18.6 1.4 1 23 735 757 735 757 0.96

12 17 0.00077 0.059 14.5 1.8 1 23 763 785 763 785 0.97

13 17 1.8e-06 0.00014 22.8 1.6 1 23 791 813 791 813 0.98

14 17 0.00013 0.01 16.9 1.2 3 23 821 843 820 843 0.92

15 17 0.0057 0.44 11.7 3.5 2 23 853 875 853 875 0.98

16 17 0.0061 0.47 11.7 0.8 1 23 880 902 880 902 0.95

17 17 0.00025 0.019 16.0 3.1 1 23 908 931 908 931 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.025	1.9	9.7	0.2	3	23	125	146	124	146	0.95
2	17	0.51	39	5.6	0.4	2	23	392	414	391	414	0.96
3	17	0.006	0.47	11.7	0.1	1	20	422	441	422	443	0.94
4	17	0.0058	0.45	11.7	0.6	2	23	453	474	452	474	0.94
5	17	4.1	3.2e+02	2.8	0.3	1	10	490	499	490	513	0.82
6	17	0.0003	0.023	15.8	1.6	1	23	522	545	522	545	0.98
7	17	0.013	1	10.6	1.3	1	23	622	645	622	645	0.84
8	17	0.35	27	6.1	0.4	1	23	650	673	650	673	0.94
9	17	0.00023	0.018	16.1	3.2	1	23	679	701	679	701	0.97
10	17	6.7e-06	0.00052	21.0	2.2	1	23	708	730	708	730	0.98
11	17	3.9e-05	0.003	18.6	1.4	1	23	735	757	735	757	0.96
12	17	0.00077	0.059	14.5	1.8	1	23	763	785	763	785	0.97
13	17	1.8e-06	0.00014	22.8	1.6	1	23	791	813	791	813	0.98
14	17	0.00013	0.01	16.9	1.2	3	23	821	843	820	843	0.92
15	17	0.0057	0.44	11.7	3.5	2	23	853	875	853	875	0.98
16	17	0.0061	0.47	11.7	0.8	1	23	880	902	880	902	0.95
17	17	0.00025	0.019	16.0	3.1	1	23	908	931	908	931	0.98

Sequence Information

Coding Sequence: ATGTCAACCTCAGAAGACTCAGACGACGAGCCACTGTCTGTTCTAGcggcaaaaaaaacaaactatgaGGTTGAAATATTCCCAGAAAAGAAAAAACGGAAAAAGAAATCGGGCAATGTGACCATTGAAATACAGAATCAATATTCACCTGTGCCGATTGAGAGGCCAACAGACGTATGGTTGTATTTGAAAGACTTGAATCCCAATGGGCCGTACAGCTGTTTACTCTGCTCAGAATGGTTTATCAACAAAACTAAAATTGttatacattatataattaatcaTAAGAAGGACTACTGTGGAATTTGCAGGTATTTTATGCCGGATAGAGAATCTTGGCTAGCTCACTCTCAGTTCCACACACCCTGGCTATGCTCCCAATGCCCTGAGACCTTTCCAACAGAGCCATTATTACGTGAACATTTTAGTAAAACGCATAATATGGTTCACTGTCGACTTTGCTACACCCGGATAATGGATGGAGATGAATACCATACACACTTGTTCCAGAAACACAGTGTCACGAACGTAGCATCGAAAAACGAGCAATCTTTTTGGAAATTCGAAAGTGATAACTTCAATTTCCTTTGCGTACTCTGCTCAAAGTCAAACAACACCATACAAACGTACTCCAATCACTACATGTCGTACCACCATATGACAATGAAATGCTTAGCTCCATTGCTCTCGGGGAAAAACTGGGATTTTCCAGTCCCAGGTGTGGAAGTCACTTTGGAATTTCTAGAAACCCAACTAAAAATCTACGATAAATACGGATATATAGATTTAGATAAGAAACCTGATAGATTAGTGGAAATGGAGGAAAGTGTGGCTGTAACGCAAACTGTCACACATGAGTTTATGACGGAAATGGTGAAAGAGGAAGTTTTGAGCGAGCCAGAAGAGATTTTAGGTACCGTTGACTATGATGATGAAGTTGGCGATGATGATACAGACAAAAAACCGATTGGTGATAAAAACAAACTATCACCTgaattgttaaattataaagGGGATGATGACTTTAATGTTACGCAAGTCGAAATGATTATGCTGCAAAAATGCTACTTTGATTACATAACCAACACAATAGAAGCGATCAAAAGGAAAAGCATGCCTCTACTCTCGGTGATTGACTACGGTACGGCCGATGCCGACCATCTAGTTGACATACAGTGTCAGCTTTGCACCTCTCAATACACCACTTTGCTGGCATTCATACAGCACATGATCAAAATGCACAGCTTGAAATCCGTGTCAACATTCACGTGTCGTGTTTGTGCCACAACTTTTGACTCCGCTTCAGAGTTGCAGACGCACGAGAGTGTTGAGTTAGGTGATTTTGAGGATCTGTGGATTTGTCAGTTTTGCGACAAAGAGTTTGACAACCGAGAGGATACTCGTAAGCATCTGACGGAGCACTGGGACCTGATGGAATATGATAACTGCTTCAGTCCTCATCTCGGGTTTAAGTGTAAATATTGTCCAACATTGTTTTGGAATGAGCCTGATAGAGAGACTCATAGTGTACGAGTACATATGCAAAAGTATGTGGAAGATTATTATAAGTGCGAAAGCTGTGATGAAATCTTCAGTGATAAgGTTTGGTTCAATCATCACTATATAACAAATCACACAGATTCTGACTCAATCCCCATTGGAGCGTACCTCCTGAAATGCTGTATATGTTGCACCGTTTTAAAGACTGTAGCTGATATGAGAAGCCACTTCAACGATAAACACCCGGAGGAAAGGAGGGTGTTCTGTTCATTAGACACCTGTAAATACAAGCCTTTTTGTCACAAGAAGTCCTTTTACTTGCATTTGAGGTCATACCATAGCAACAAAAAACGTCAAGAAGTGTACGCCTGCGAATACTGCGGCAAACAGTTCAACAACAAGCGGGCGTGCAGTGCTCACACCGCGCAGGCGCACGGCGCGGGCCGGTTCATGTGCAGTCTGTGCAAACAGCCGCTACGTACTGCGGACGAGAGAAAGATCCACTACCTACTCCGCCACCCTGGCCGCCACCCCTTCCAATGCCGCGAGTGTGACAAGTCCTTCCAGTACAAGTCCTCGCTATATCTGCACAAGAAGGAGCATGCGCCTGACAAACAGGACTTTAAGTGCACATATTGTGAGAAGGTGTTCAAGAAGCGCGAGTCATTCCGAGAGCACATTATGATCCACGAAGGTCCAAAGCACGCATGTTCCTATTGCCCAATGGTGTTTGTCCAGCGATCCAACATGCTGAGGCACGAGCGAAGACATACGGGCGAACGGCCTTATTCTTGTCAATACTGTCCTAAGACCTTCTCTGATAAAGGCGCCTGCTCGTCACACGCTAGAGTGCATCAGAAACCGCCAGCGTTTCCTTGCATGTATTGCGGCCAGACTTTCGTACAGAAATCCAAACTGACTTACCACATCAGAAAACACACAGGAGAAAACTTAGAAACATGTACATTCCAATCCTGCGGCAAGATATTTACAAGCGGTAGTTCCCTTCGCGAACATATGAAGACACACGAGAGAAAAGATGCTGCGAACCCCGCCAAATGTCCAATTTGCTCGAAATCTTACCAAGACGAGAAGTGTATGATGAAGCATTTGAAGACGACGCACACGAAAGCCAAGTTCTTGTGTCCCATATGTAACAAGAAACTGCACAGCGGCTCCTCTCTCAGGGAACACGTCATCACCCACGGGGACTCCAAAGCTTACAAGTGCAAGATATGCAACAAGTCGTACAACATAAAGCGCACGATGGTCCGCCACCTGCGCCGCCGCCACGGCGTCAAGCACGCCGAAGCGACCCTCGCCGAGTTCTACAACAAACTCGACCCACGTGACATCAATCTGAAACTCGATGAGACCACCATAACCAGCATATTCGGACCCCGGAAGACCAAACCGCCCTTGCGTGACGCGCCGAACTACACACATAAGAAGCCGAAGCTGGTCGATTACAAGGATAATCCGGTTATGGAGACTGTGCATGTCAAGGTTGAAGCGGAGGGCGATGTGATGCCGACTGACTTCGTTACGGTTAAGATAGAGTGCGCTGACGAGGAATATGATGGGAACGAGTACCTTTAA
Protein Sequence: MSTSEDSDDEPLSVLAAKKTNYEVEIFPEKKKRKKKSGNVTIEIQNQYSPVPIERPTDVWLYLKDLNPNGPYSCLLCSEWFINKTKIVIHYIINHKKDYCGICRYFMPDRESWLAHSQFHTPWLCSQCPETFPTEPLLREHFSKTHNMVHCRLCYTRIMDGDEYHTHLFQKHSVTNVASKNEQSFWKFESDNFNFLCVLCSKSNNTIQTYSNHYMSYHHMTMKCLAPLLSGKNWDFPVPGVEVTLEFLETQLKIYDKYGYIDLDKKPDRLVEMEESVAVTQTVTHEFMTEMVKEEVLSEPEEILGTVDYDDEVGDDDTDKKPIGDKNKLSPELLNYKGDDDFNVTQVEMIMLQKCYFDYITNTIEAIKRKSMPLLSVIDYGTADADHLVDIQCQLCTSQYTTLLAFIQHMIKMHSLKSVSTFTCRVCATTFDSASELQTHESVELGDFEDLWICQFCDKEFDNREDTRKHLTEHWDLMEYDNCFSPHLGFKCKYCPTLFWNEPDRETHSVRVHMQKYVEDYYKCESCDEIFSDKVWFNHHYITNHTDSDSIPIGAYLLKCCICCTVLKTVADMRSHFNDKHPEERRVFCSLDTCKYKPFCHKKSFYLHLRSYHSNKKRQEVYACEYCGKQFNNKRACSAHTAQAHGAGRFMCSLCKQPLRTADERKIHYLLRHPGRHPFQCRECDKSFQYKSSLYLHKKEHAPDKQDFKCTYCEKVFKKRESFREHIMIHEGPKHACSYCPMVFVQRSNMLRHERRHTGERPYSCQYCPKTFSDKGACSSHARVHQKPPAFPCMYCGQTFVQKSKLTYHIRKHTGENLETCTFQSCGKIFTSGSSLREHMKTHERKDAANPAKCPICSKSYQDEKCMMKHLKTTHTKAKFLCPICNKKLHSGSSLREHVITHGDSKAYKCKICNKSYNIKRTMVRHLRRRHGVKHAEATLAEFYNKLDPRDINLKLDETTITSIFGPRKTKPPLRDAPNYTHKKPKLVDYKDNPVMETVHVKVEAEGDVMPTDFVTVKIECADEEYDGNEYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -