Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596063.1:7657264-7659063[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.32 25 6.3 3.0 1 23 25 47 25 47 0.95

2 16 0.76 59 5.1 0.0 2 23 75 97 74 97 0.89

3 16 0.38 29 6.0 0.2 2 23 118 140 117 140 0.92

4 16 0.00067 0.052 14.7 1.5 3 23 147 168 145 168 0.94

5 16 0.0044 0.34 12.1 0.7 1 23 173 196 173 196 0.95

6 16 0.94 72 4.8 0.8 2 23 199 221 198 221 0.94

7 16 0.00091 0.071 14.3 1.0 2 22 228 248 227 248 0.93

8 16 0.0027 0.21 12.8 0.8 1 23 306 329 306 329 0.93

9 16 1.5 1.2e+02 4.1 0.1 3 23 358 379 356 379 0.93

10 16 0.085 6.6 8.1 0.2 3 23 403 425 401 425 0.95

11 16 0.00037 0.029 15.5 0.4 3 20 432 449 430 453 0.90

12 16 0.0079 0.61 11.3 0.2 1 23 458 481 458 481 0.97

13 16 0.00027 0.021 15.9 0.2 2 23 487 509 487 509 0.94

14 16 8.5e-06 0.00066 20.6 5.1 1 23 513 536 513 536 0.97

15 16 0.00034 0.026 15.6 0.6 2 23 543 564 542 564 0.96

16 16 0.0036 0.28 12.4 2.3 1 23 570 592 570 592 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.32	25	6.3	3.0	1	23	25	47	25	47	0.95
2	16	0.76	59	5.1	0.0	2	23	75	97	74	97	0.89
3	16	0.38	29	6.0	0.2	2	23	118	140	117	140	0.92
4	16	0.00067	0.052	14.7	1.5	3	23	147	168	145	168	0.94
5	16	0.0044	0.34	12.1	0.7	1	23	173	196	173	196	0.95
6	16	0.94	72	4.8	0.8	2	23	199	221	198	221	0.94
7	16	0.00091	0.071	14.3	1.0	2	22	228	248	227	248	0.93
8	16	0.0027	0.21	12.8	0.8	1	23	306	329	306	329	0.93
9	16	1.5	1.2e+02	4.1	0.1	3	23	358	379	356	379	0.93
10	16	0.085	6.6	8.1	0.2	3	23	403	425	401	425	0.95
11	16	0.00037	0.029	15.5	0.4	3	20	432	449	430	453	0.90
12	16	0.0079	0.61	11.3	0.2	1	23	458	481	458	481	0.97
13	16	0.00027	0.021	15.9	0.2	2	23	487	509	487	509	0.94
14	16	8.5e-06	0.00066	20.6	5.1	1	23	513	536	513	536	0.97
15	16	0.00034	0.026	15.6	0.6	2	23	543	564	542	564	0.96
16	16	0.0036	0.28	12.4	2.3	1	23	570	592	570	592	0.97

Sequence Information

Coding Sequence: ATGCGCAGGAGGAAAAATCTTCAAGTATTGTTCAACAATACAACGATAATACCTTTCAAATGGAGAGGAAAGTACCTCTGCTTCTACTGCAGTTCGCACGTGACCGAGTATGCGGAGTTGCGAAAACATACCAAAACTCACGGGGACTGCTCGATTCTAGACCACTCCCTAAAAGTCTTGAAGGGTGGGGCTATGGAAATTAAAATAGACGTGTCAGACGTCTCTTGTGAAATCTGTGGAACTATCCTCGCGTCTTTCGCCGAAGTGATCACTCATCTGGAAGCCAAACATAGCTTAGAATACGATAAAGACGTAGACATGGCTATTGAGGAGTACAAGCTGGCAGACCTTAGCTGTCTCGCTTGCAACGAAAAGTTCGCGTACTTCGGCTATCTTGTATCGCATGTGAATAATCAACATCCGAAGAATTGTATCATATGCGATAAATGCGACCAGAAGTTCAATAAAAAGCGAGATTTGTTCTCTCACGTGAAAAACTATCACAGAGAAGGCGGATATCAGTGCGATCTGTGCCCGCAAGCGTTCACCTCCTTAAACATACTGCGAAAACATCGAAGCAACCGACATCTCACCAGATGCTGCATATGTCAGCTCAGACTGCCTTCAGCAGCTTTAAAGCAGAAGCACATGGAACTAGAACACCCTGACGATGGTTCCTTGCAGTGCGACAATTGCGACAAAGAGTTCCATACCAAAACAGGTCTCCGAATGCACGCGAGGAAGTGCAAAATAGACTTATTTGAATTCGCCGTCAAAAAAGAAGACTACACAATGGACCTCGATCAAAACTACGAGGATACCGCGAAAAAGCCAAGCGTTAAGCAAATAAGAGAGAACATAGTCATCGTTATAAACATGTCAACTGCGATACCATTCAATTTCTACAAGAATAAGTTCAACTGCTTCTACTGCTCCAAGGACTTCCCCGATTCCGATTCGATGCGCGAACATACGGTGATGCAACATCCGGTGTGCGATATCAGAGAGAAATGCATTAAAAAGTGCCGAGAAACAGTCACCTGCGTCAAAATCGACATATCATCCCTCGCATGCAAGATCTGCTTCGAATCCATGACGGAACTGGACAAGCTGCTCGATCATCTGATCGTCAAGCATAAAGCCAACTACGACAAGACAATAACCACTTGCTTGCAGCCTTACAGACTGATTAAGGACCACATGGCTTGCCCAAATTGTCCAAACGAGATCTTCAGATTCTTTGGAACGCTGCTCAAGCATATGAATAAGGAGCACACGAATAACAACATCATCTGCGTTTACTGCGGCGAGACTTTCCGACGCGATCAGAACCTGAGAGTCCATATCTGGCGGCATCACAGAGATGGTAGGTTCAAGTGCGGTATCTGCGGTGCGGAGTGCAGCATACCGTCGCGCCTTTACATGCATATGGCGAAAGCTCACGGCGTCCGGGCGGCCAAATGCCCGAAATGCCCGGAGAGTTTCGCCACGCAGTACTTGCGTCAGAAGCATTTGATAGAAGCGCATAATTCTGGGCACAAGTGCAGCTACTGCGGAAAGCAGTTCACAAGGAACTCTTTCATGAGGGACCACATCCGCCGGACTCACTTGAAGGAGAAGAACGTGGAGTGTTCTATCTGTAGCATGAAGTTCTTTAACAATATTCTTTTGAGGAGACATATGGTGAAACACAGCGGGGAGAAAAACTTCCACTGTGATGTCTGCGGAGAGAGATTCTTCTGGCGAAAGAGCTTGAGGACTCATATGGCAAGGCATAATAAGCATCAACTGCACATGTAG
Protein Sequence: MRRRKNLQVLFNNTTIIPFKWRGKYLCFYCSSHVTEYAELRKHTKTHGDCSILDHSLKVLKGGAMEIKIDVSDVSCEICGTILASFAEVITHLEAKHSLEYDKDVDMAIEEYKLADLSCLACNEKFAYFGYLVSHVNNQHPKNCIICDKCDQKFNKKRDLFSHVKNYHREGGYQCDLCPQAFTSLNILRKHRSNRHLTRCCICQLRLPSAALKQKHMELEHPDDGSLQCDNCDKEFHTKTGLRMHARKCKIDLFEFAVKKEDYTMDLDQNYEDTAKKPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMQHPVCDIREKCIKKCRETVTCVKIDISSLACKICFESMTELDKLLDHLIVKHKANYDKTITTCLQPYRLIKDHMACPNCPNEIFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCGICGAECSIPSRLYMHMAKAHGVRAAKCPKCPESFATQYLRQKHLIEAHNSGHKCSYCGKQFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHQLHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856923;
90% Identity: -
80% Identity: -