Vcam021889.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596063.1:7637427-7640318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.11 13.6 0.2 1 19 49 67 49 69 0.96 2 19 0.16 12 7.2 3.0 2 23 99 121 99 121 0.95 3 19 0.011 0.88 10.8 0.4 2 23 145 167 144 167 0.93 4 19 0.028 2.2 9.6 0.0 1 23 171 194 171 194 0.94 5 19 0.00088 0.068 14.3 5.7 2 23 198 220 197 220 0.97 6 19 0.84 65 4.9 0.3 2 23 226 248 225 248 0.90 7 19 0.00013 0.01 16.9 1.6 1 23 255 278 255 278 0.96 8 19 0.017 1.3 10.2 0.3 3 23 286 306 284 306 0.94 9 19 0.00054 0.042 15.0 2.0 5 23 313 331 311 331 0.93 10 19 1.5 1.2e+02 4.1 4.0 1 23 376 399 376 399 0.91 11 19 2.8 2.2e+02 3.3 0.2 2 19 425 442 424 447 0.73 12 19 2.1 1.6e+02 3.7 1.1 2 23 470 492 469 492 0.90 13 19 0.00047 0.036 15.2 0.1 1 23 499 522 499 522 0.94 14 19 0.019 1.5 10.1 4.6 1 23 527 550 527 550 0.98 15 19 0.0025 0.19 12.9 0.1 2 23 556 578 555 578 0.95 16 19 0.0022 0.17 13.1 0.8 1 23 585 608 585 608 0.96 17 19 0.022 1.7 9.9 0.8 1 23 614 636 614 636 0.94 18 19 3.4e-05 0.0026 18.7 2.8 1 23 642 664 642 664 0.99 19 19 1.9e-06 0.00014 22.7 2.5 1 23 670 692 670 693 0.96
Sequence Information
- Coding Sequence
- ATGAGGCGATGCCTGGGCAAATTCTTGATCGGTTATGTCAGTGGAGAGATCACCCTGGAGCAGGGTGAACAGCAACTCGCAGCTTTGCTCATTAGTATCATTCAAGACTCTACTATCGTTCCCTTCCGATGGTCCAAAGGCAAATTCATGTGCTTCTACTGCCCAGCGACATTCAAAGACAGCACAGCCTTGAAAGCACACAACGACTGTGGCCACGCAGAGATTAACATCACGGAAATCATCACACGGGCCTCCTACACACAaagcactttcaaaatagaCGTCGCCGCCGCCAAATGTAAAGATTGCAACCAAGACATCTCTGACATATCCCACTACATCCAGCATATTTGCGAAAAACACGACGCCGTTATTGACTCTGACATCGCCAAGTATTTCTCCTCGTACAAACTATATGACGACGATAAAATGAGCTGCGGAGAATGCGGTCAGCAGTTCAAATACTTCAGATCGTTGCTCATACACGCGAACAACAGCCATTTGGACAAATATGTGTGCGATATATGCGGTAAAGGCGTTGTAggtaaaatcaatatttataacCACGTGAAACAAAACCACTCGGTGAAATCCTGCAAACACTGTAAGGAAACTTTTAGAACGCACTACGCTTTGGATCAACATATAAATACGAGACACAACACAGTTGTCTTGACCTGTGACTTGTGTGGGGAGTTGCAGCCGAACCGGTATAAGTATAAGCGACATATGGCCTTTGTTCACGATCGCAAGGAGTGGCAGTACGTATGTGAGTTTTGCTCGAAGGTTTTCACGCGGAACAGCAAATACGTTCAGCATAAGGAGCGGGTACATTTGAAGCAGAAGGAAATCATATGTGAGCACTGCGAGTACAGGGCTTACGATTCCGATGAGTTGAAGCTTCACATGTTTGCTCATGCTGAGCCGCTGTCGTGTGAATGCGGAAAAACGTTTCGGAGGAAGAAGAATCTGATGGATCATAAAACACTCCATGTGGACACATCTATCGTAGATTCAGTGTTAGAGAAGATGTCTGAACTGCAACGGAAAGAGGATCTCGTAAGTCTGATGTCCGCCATCATAGAGAACTCCACAGCGGTGCCCTTCCGTTGGCACTGTAGCAAATTCGCTTGCTTCTTCTGCTGCTACCCTTTCGAGGACAGCTCCAAACTGAAGGCGCACTACCACGAAGAACATAGCGACATGAAAATCAGGAGCGCATTCCGGGGCGTCATCAAAAACAGCAAAGTCAAACTAGAAATCACGAACTTAACTTGCAAGATGTGCTCGAAAAACTTCCTTGGGGTAGACGACCTCGTCGAACACTTTGTCAAAATCCACAGCATGAAGCTGAACCTCAGCGTGAAGAACCAAGTGTTCGCGTACAAGCTCTCGGACGACAACATGCCGTGTTTGCAATGCGGGGACGAGTTCAGATTCTTCGGGACCCTTCTGAAGCACACACACGCGAAGCACAACACGTCCAATGAGACGTTCCTGTGCGAGATCTGCGGACAGGCGTTCGTCACCAAGACCAGCGTGGCCACCCACGTGAAGTCCGTCCATTCCAGCGAAACGTTCCGCTGCGAGAAGTGCAACGTGGATTTCAAAAACGTGAACGCGCTGCATCTCCACCATCGGCGGACGCACAAAGCGTACATGCTGAAATGCCCGAAATGCCCCGAAGTACTGACCAGTCCGTACCTCCGCAAGCGGCATTTGGCGAAAGTGCACGACGTGAAACGTTTCCAATACGAATGCGATATGTGTGATTTCGTGTTCACGCTAAAAAGCCGCTTGCTGATGCACAAATCGCGAGTCCATATGAAAGAGAGGAGTTACAGTTGCGAGTTTTGCGCTTACAAAGCGTTTAACAAGGACAGTCTGTCTCGCCACATGGTCTCGCACGATGATACGCGGCCGTTCCAATGTGAGTTTTGCAAGAAGGCGTTCCAGAGGAAGAAGACCCTGGAACTGCACAGAAGGATTCACACGAACGATAGACGTTACTCGTGCAAGGAGTGCGGGAAGGCGTTTGTGCAATACACGAGTTTGAAACTTCATTACCGCGTGCACCATTCGAAAGAGGGGCCCTCGGCGGCGGCCGCAGTCGACGCTGCCTATTGGTCGCCGAGACACTGA
- Protein Sequence
- MRRCLGKFLIGYVSGEITLEQGEQQLAALLISIIQDSTIVPFRWSKGKFMCFYCPATFKDSTALKAHNDCGHAEINITEIITRASYTQSTFKIDVAAAKCKDCNQDISDISHYIQHICEKHDAVIDSDIAKYFSSYKLYDDDKMSCGECGQQFKYFRSLLIHANNSHLDKYVCDICGKGVVGKINIYNHVKQNHSVKSCKHCKETFRTHYALDQHINTRHNTVVLTCDLCGELQPNRYKYKRHMAFVHDRKEWQYVCEFCSKVFTRNSKYVQHKERVHLKQKEIICEHCEYRAYDSDELKLHMFAHAEPLSCECGKTFRRKKNLMDHKTLHVDTSIVDSVLEKMSELQRKEDLVSLMSAIIENSTAVPFRWHCSKFACFFCCYPFEDSSKLKAHYHEEHSDMKIRSAFRGVIKNSKVKLEITNLTCKMCSKNFLGVDDLVEHFVKIHSMKLNLSVKNQVFAYKLSDDNMPCLQCGDEFRFFGTLLKHTHAKHNTSNETFLCEICGQAFVTKTSVATHVKSVHSSETFRCEKCNVDFKNVNALHLHHRRTHKAYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDMCDFVFTLKSRLLMHKSRVHMKERSYSCEFCAYKAFNKDSLSRHMVSHDDTRPFQCEFCKKAFQRKKTLELHRRIHTNDRRYSCKECGKAFVQYTSLKLHYRVHHSKEGPSAAAAVDAAYWSPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -