Vcam012356.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- SALL3
- Assembly
- GCA_951394065.1
- Location
- OX596047.1:7663078-7664793[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.039 3 9.1 1.1 2 23 165 186 164 186 0.97 2 13 1.2e-05 0.00094 20.2 6.0 1 23 192 214 192 214 0.98 3 13 0.00084 0.065 14.4 0.8 3 23 247 267 245 267 0.93 4 13 3.7e-05 0.0029 18.6 1.3 1 23 273 296 273 296 0.96 5 13 0.011 0.88 10.8 3.3 1 23 304 326 304 326 0.97 6 13 0.00011 0.0081 17.2 1.9 1 21 332 352 332 354 0.95 7 13 9.2e-07 7.1e-05 23.7 0.7 1 23 360 382 360 382 0.98 8 13 2.3e-05 0.0018 19.3 1.1 1 23 388 410 388 410 0.98 9 13 3.6e-06 0.00028 21.8 0.6 1 23 416 439 416 439 0.97 10 13 0.00076 0.059 14.5 0.5 3 23 446 463 445 463 0.97 11 13 0.47 36 5.7 4.9 1 20 469 488 469 492 0.91 12 13 0.028 2.2 9.6 0.2 1 23 498 523 498 523 0.94 13 13 0.00021 0.016 16.3 1.0 1 23 529 552 529 552 0.98
Sequence Information
- Coding Sequence
- ATGGATACAAAACTATGTCGCGTTTGTCTCGACAGAATTGCTACAATATCGCTCTTTGACAAAGATGAAAACCATCAGTACCGTGAGAAGATGATTAAGTGTGCTGCCGTGAGCATCGAGGATGGTGATGGGCTTCCTGTTGGCATCTGTAAGGAATGTGCCTCAGATCTTTCGGTTAGCTACGCGTTCGCGTTAAAGTGCGAAGCTTCGGACCGAGCTCTGCGCGGGCTTGACCTGAACCCGGTTCCAAAACATGAAGGAAAGCCAAAGCAAATTAAACTCGAACTCGATGACACGGATTACGCCAGTGATGGTACACATCAATTCGATGAATATATTGATCGGCTATCAGACTCAAAAACCGAAATAGAAATCACACCTACAATCAATAACGAactacatagaaaaaaaaagcataaaaataaatattatgataaaacactTCCTAACTATCTACGTAAGAACAAGCGTAAAGTAAGGATGGGACCCATTCAATGCATGATCTGTGGCCGCATCACCTCTTGCTTTTCCGCTTTTGAGCTTCACATGCGTTCTCACACTAAAGAAAAACCCTTCAGCTGTGACCTGTGTAAGAAATGTTATAGAACTAAGAGCACCTTGAAACAACACATCAACAAACACTACAGTACAGATAATAGAGAAGAATCAAAAACCAGGACACTACTCGACTGGGATTTAAGAAAAAAGGGCAACAAGATCAAACAACCTCCGCTTGAATGCATTATTTGTGGACAGAAGTCATGCAGTCGCTCGGCACTAGAGATTCATATGAGGAAGCACACAGGAGACAAGCCTTTCTCATGCACTGATTGCAACAAGTTCTACTCACTTAAAACATCCCTAATGAGACACATAGAAGTAACGCACTCAAAGGAAAAAAGTTTGAGATTTGTCTGTGAACACTGTGGTAAGAATTTCTATTGCCGAACcagtataattatacatttacgcattcacactggagaaaagccCTATGCCTGTTCATTATGTGGAGAACGGTTTACGCAAAATGCAACTCTAGTCCGTCACAGAAGATGTCATACAGGAGAAAAACCTTTCAAGTGCCAAACTTGTGGTAAAGCTTTCAGAGACCAGGCATTAGTTAAAAAACATCAGATGGTGCACTCTAAGGCCAAGGATTTTATCTGTCACATCTGCAGCAAAGCATTAAAGTCAAAGCAAGCGCTCAGAGCCCATATAAACCGTCATCTTAATCCCGAGAAGTTCATCTGCAATTTCTGTGGAATGACCTTCACTGTGAAAGGTAACTTAACAATTCACGTCCGGCGTACACATTCTGAAAATTCTGGTATTTGCACAGTCTGCAACAAGTCATTTTCCAATCTAGCAGTTCATATGAGGTCACATAGCGGTGAGAAACCACATCGGTGCAAGTTGTGCAATCAGAGGTACATGACGGCGCGCAGCTTGTCCCACCACTTCGGGTTCAAGCACCGGAATGCTGCCAAGTTTAAATGTTCAACAGGCCAGTGTGACAAGGCTTTTCCTACCATTGCTATGCTGGAATTCCACATACTAAAGACACATCTGGACAAGACGCCGTATGTGTGTCAGCACTGTGCGCGCGGATTCCTTCGCCCCTCAGACCTCTCGCGTCATCTTAGAATGAACCACATGGAAAACACGCAGGTCACATCACAGTTCATTAAAACTGTTCAGTTGTTCAATTCTTAG
- Protein Sequence
- MDTKLCRVCLDRIATISLFDKDENHQYREKMIKCAAVSIEDGDGLPVGICKECASDLSVSYAFALKCEASDRALRGLDLNPVPKHEGKPKQIKLELDDTDYASDGTHQFDEYIDRLSDSKTEIEITPTINNELHRKKKHKNKYYDKTLPNYLRKNKRKVRMGPIQCMICGRITSCFSAFELHMRSHTKEKPFSCDLCKKCYRTKSTLKQHINKHYSTDNREESKTRTLLDWDLRKKGNKIKQPPLECIICGQKSCSRSALEIHMRKHTGDKPFSCTDCNKFYSLKTSLMRHIEVTHSKEKSLRFVCEHCGKNFYCRTSIIIHLRIHTGEKPYACSLCGERFTQNATLVRHRRCHTGEKPFKCQTCGKAFRDQALVKKHQMVHSKAKDFICHICSKALKSKQALRAHINRHLNPEKFICNFCGMTFTVKGNLTIHVRRTHSENSGICTVCNKSFSNLAVHMRSHSGEKPHRCKLCNQRYMTARSLSHHFGFKHRNAAKFKCSTGQCDKAFPTIAMLEFHILKTHLDKTPYVCQHCARGFLRPSDLSRHLRMNHMENTQVTSQFIKTVQLFNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -