Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596066.1:3331857-3333251[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.8e-05 0.0037 18.3 0.4 1 23 11 34 11 34 0.95

2 15 0.0004 0.031 15.4 0.9 1 23 39 62 39 62 0.94

3 15 0.00029 0.022 15.8 4.9 1 23 68 91 68 91 0.95

4 15 0.00066 0.051 14.7 0.1 2 23 98 119 97 119 0.95

5 15 0.0031 0.24 12.6 2.9 2 23 126 147 125 147 0.97

6 15 0.0072 0.56 11.4 1.0 1 23 150 172 150 172 0.96

7 15 1 78 4.7 0.3 6 23 177 194 176 194 0.96

8 15 0.0034 0.27 12.4 3.1 2 23 201 221 200 221 0.97

9 15 8.6e-06 0.00067 20.6 6.0 1 23 227 249 227 249 0.97

10 15 1.6e-07 1.2e-05 26.1 0.3 2 23 256 277 255 277 0.97

11 15 0.00056 0.044 14.9 3.9 1 23 283 306 283 306 0.95

12 15 0.00019 0.015 16.4 3.3 1 23 312 334 312 334 0.98

13 15 0.0015 0.11 13.6 1.6 1 23 341 363 341 363 0.98

14 15 0.0012 0.096 13.8 0.0 1 23 396 419 396 419 0.96

15 15 0.0047 0.36 12.0 0.4 1 23 424 447 424 447 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.8e-05	0.0037	18.3	0.4	1	23	11	34	11	34	0.95
2	15	0.0004	0.031	15.4	0.9	1	23	39	62	39	62	0.94
3	15	0.00029	0.022	15.8	4.9	1	23	68	91	68	91	0.95
4	15	0.00066	0.051	14.7	0.1	2	23	98	119	97	119	0.95
5	15	0.0031	0.24	12.6	2.9	2	23	126	147	125	147	0.97
6	15	0.0072	0.56	11.4	1.0	1	23	150	172	150	172	0.96
7	15	1	78	4.7	0.3	6	23	177	194	176	194	0.96
8	15	0.0034	0.27	12.4	3.1	2	23	201	221	200	221	0.97
9	15	8.6e-06	0.00067	20.6	6.0	1	23	227	249	227	249	0.97
10	15	1.6e-07	1.2e-05	26.1	0.3	2	23	256	277	255	277	0.97
11	15	0.00056	0.044	14.9	3.9	1	23	283	306	283	306	0.95
12	15	0.00019	0.015	16.4	3.3	1	23	312	334	312	334	0.98
13	15	0.0015	0.11	13.6	1.6	1	23	341	363	341	363	0.98
14	15	0.0012	0.096	13.8	0.0	1	23	396	419	396	419	0.96
15	15	0.0047	0.36	12.0	0.4	1	23	424	447	424	447	0.98

Sequence Information

Coding Sequence: ATGCATAAACTAACACACACAAACAACTATTTCACTTGTGAAGTTTGCGCCAAAGTTTTCAGGACAAGATCTGGTCTTACATTACATAACAATATAAACCACCCGAACGCCAAACATCCGTGCGGCAAATGCAACGTAGTGTTCGCAACCTCTGTACACTTACGAGAACACGAGTTGAAGATTCACACCAGACATTCCGTTTATATCTGTGATATATGCGGTAGCACGTTCAAACAGAAATGTCACATTCAGAAACATATGAAATTTGTCCATATGGAACGGGAAAAACTGGAATGCGACGAGTGTGGAAAAAAACTACCGAATAGATCAACAATGATAGCGCATCTCGGGTCTCACAGGCTGATAAAACCATTAAAATGCAAGCTTTGTCCATGTCTCTTCAACACCTCATCAGCCTTGAGCGTCCACAAAAAGAAACACAAATCTTTTTCCTGCAAAGTATGCAGCAGCGTTTTCACATTGAAAAACGATCTATTCGCACATTTTACAATACACCCGGAGCTTGCTTGCGACGTCTGCTATAAATTCACGGACGATATGGAGAAACACAAGCTAATGCACAAGGGAGGTGTTCCTGTGCAATGCCATCTCTGCGATAAAAAAATGAGCAGAAGTAATCTTTCCAACCATATAAGACGCCACATAGGGGTTAAACCACACTGTTGCAATGTGTGCCAGAAGAGATTTACAGTTCGATCCAATTTAAACACTCACATGTTGACGCACACCGGGGAGAAAAATATATCTTGTGATATCTGTGACAAGACTTTCATTCAGTCAGGGCAACTAAAGAACCATTTACGAGTACACGCCGGCATTAAACCATTTGACTGCGAACATTGCGGAAAAAAATTCTCAGAAAAACGCAGTCTACAGTGTCATATTAACATTGAGcatgccaaaaaaataatattcatatgtGATATTTGCCATAAAGTGCATACAAATAAAGAACAACTGATCAAACACATCAAATCTCACAAAGGAAAGAAACACCAATATACATGTCCTGTATGCAAGAAAGAGTTTCAAAACCTAATCCTTATGTGTCAGCATGCTAAAATGCATAAGAACGATAAAAGGCCTTGTATTATGTGCGAAGATGTACTTTTAAACGTACAATCCCTTAATAGACACTACCACATACATCATGGAGTGCACGCATATGCGTGTAATATATGCGAAGAAGGCACCAACGATGTCAGTGCGTTATTATCACATATGAGACTACTTCACAATGTATTATCTTACCGTTGTCAAACTTGTGGTAATGTATTCGAAGAAGGCCGCCGATTGTTAGACCACATGAGGAAAGTCCACGGCCTTAGACCGAAAAGGCCgtatattcaatattattctATGAGCCGCAGTTAA
Protein Sequence: MHKLTHTNNYFTCEVCAKVFRTRSGLTLHNNINHPNAKHPCGKCNVVFATSVHLREHELKIHTRHSVYICDICGSTFKQKCHIQKHMKFVHMEREKLECDECGKKLPNRSTMIAHLGSHRLIKPLKCKLCPCLFNTSSALSVHKKKHKSFSCKVCSSVFTLKNDLFAHFTIHPELACDVCYKFTDDMEKHKLMHKGGVPVQCHLCDKKMSRSNLSNHIRRHIGVKPHCCNVCQKRFTVRSNLNTHMLTHTGEKNISCDICDKTFIQSGQLKNHLRVHAGIKPFDCEHCGKKFSEKRSLQCHINIEHAKKIIFICDICHKVHTNKEQLIKHIKSHKGKKHQYTCPVCKKEFQNLILMCQHAKMHKNDKRPCIMCEDVLLNVQSLNRHYHIHHGVHAYACNICEEGTNDVSALLSHMRLLHNVLSYRCQTCGNVFEEGRRLLDHMRKVHGLRPKRPYIQYYSMSRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -