Vcam021892.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596063.1:7651530-7655572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.033 2.6 9.3 1.7 1 23 43 65 43 65 0.96 2 29 0.0023 0.18 13.0 0.3 3 23 94 115 92 115 0.96 3 29 0.0087 0.67 11.2 1.6 2 23 135 156 134 156 0.96 4 29 7.4 5.7e+02 2.0 5.3 1 23 185 208 185 209 0.96 5 29 9.2 7.1e+02 1.7 4.3 2 23 211 233 210 233 0.96 6 29 8.7 6.7e+02 1.7 1.5 2 19 240 257 240 260 0.88 7 29 0.00036 0.028 15.5 5.4 1 23 309 331 309 331 0.98 8 29 0.0045 0.35 12.1 0.3 1 23 404 427 404 427 0.90 9 29 2.6e-07 2e-05 25.4 1.6 1 23 433 455 433 456 0.95 10 29 0.02 1.6 10.0 0.3 2 23 462 484 461 484 0.94 11 29 0.0073 0.56 11.4 0.8 2 21 489 508 488 511 0.90 12 29 0.0019 0.15 13.3 6.1 1 23 515 538 515 538 0.97 13 29 0.0057 0.44 11.8 1.6 2 23 545 566 544 566 0.96 14 29 7.4e-05 0.0057 17.7 1.1 1 23 572 594 572 594 0.97 15 29 5.3 4.1e+02 2.4 4.4 1 23 662 684 662 684 0.96 16 29 2.5 1.9e+02 3.4 0.1 3 23 713 734 711 734 0.84 17 29 2.7 2.1e+02 3.3 6.0 2 23 755 776 754 777 0.95 18 29 0.00017 0.013 16.5 5.6 1 23 782 805 782 805 0.97 19 29 0.0013 0.099 13.8 3.1 1 23 810 833 810 833 0.93 20 29 0.00082 0.064 14.4 3.2 2 23 836 858 835 858 0.95 21 29 0.23 18 6.7 1.0 2 20 865 883 864 885 0.94 22 29 0.028 2.2 9.6 1.7 1 23 941 964 941 964 0.98 23 29 0.014 1 10.6 0.2 2 23 1039 1061 1038 1061 0.92 24 29 5e-05 0.0039 18.2 0.3 3 23 1068 1089 1066 1089 0.95 25 29 0.00091 0.07 14.3 1.2 2 23 1094 1116 1093 1116 0.95 26 29 0.081 6.3 8.1 0.6 1 23 1121 1144 1121 1144 0.97 27 29 0.003 0.24 12.6 6.2 1 23 1148 1171 1148 1171 0.97 28 29 0.042 3.2 9.0 2.0 2 23 1178 1199 1177 1199 0.96 29 29 1.3e-05 0.00098 20.1 1.7 1 23 1205 1227 1205 1227 0.98
Sequence Information
- Coding Sequence
- ATGGATAATCATTATAAAAATGCGAACGAAAGCATCCAGAAATGCAGACCTAATGAGATTAGATGGAGAAATCTCCAAACGCTGGTCAACAATTCATCGGTGATGCCATTCAAATGGAAAGGCAAATACTTGTGCTTTTTCTGTGGAATGAGTACCGGTGATCATCGAGAATTGAAAGAGCACGTGAAAACTCACATACCCTGCTCTGTCGCCTCATTGGTGGAAGCAAAACTTATCAGACGCGGAAGCGTTATCAAAATAGATGTTTCGGATGTCATTTGCAATGTCTGTTCCGAAGAGTTTTCCGACATCGAACATTTGATATTGCACTTGAAATCAAAACATAAACTCTGGTATCGCGAGGGTGCTTTAACGCTTACGGCATACCGACTGACCGATTTGAAATGCCTCATTTGCGACACAACATTCAAACTGTTTGACTTGATGCAGCATATGAAAAAGACTCATCCCGACAACCCCTGCCAATGCAACACATGTATCCAAAAACATAACAATCTGCTagataaaaaattacataccaAATACAAAGATTATAGCTGTTCAAAATGCTCTCTGCCATTTCCATGTTTGCAAGATTTCAAAAAGCATGCAAAGAAAAACCATCACTCAAAGTGCAATCTTTGCTCGCTGAGCTTTCTAACGCACCAACATAGAATGCTTCATATAAACACGGATCATGAACTCGAAAATGGCGGACAATGTAAATTTTGCCATAAACAACTATACAACAAACAAAGTATATTATCACATGCTTTTCGATGCAACGTCGACGCTTCTAAAGACGAAGACCTGGATGCTGTCAATAACTTAAATACGCGTAAAGTTACACAACAATACAGAGAAAACATCTTCAAAATTATGGATTCAACAACGGCTATGCCTTTTAAATTCCTCACTAGTAAGTTTAGGTGTTTCTACTGTCCTAAAGACTTTACGACATGTGTTGAGCTCAAGCAGCACACCAAAAAACATACGGAATACGAGTCTGTGCTTAAAACAATAAGAATTCGTGGCAAATCTGAAGGAGTGCAAATAAAACTGGACATATCACAGCTGTACTGCAAGCGGTGCTTTCTAGAGTGCCATGATTTTGATACAATGATCAAGCACTTGGAAAGCGAACATAACACTGTCTTCACAAAAGATATATTAGGTATCTTTCAATGCTTTCGTTTAGTACACGACAAGTTTCCGTGTATGTATTGTGACATTGAATTTACATATTTCAGTATGCTATTAAGACATGTCTATGGGGTTCACAACGCTGGCTACGAATACGTATGCTCGTACTGCGGGAAGCCTTTCAATTCCAGTCCAAATCTGCGCAGGCACATGACTTTACACCATGCGACTGATCGACTTAAATGTAGCGTCTGCGATAAAGTTTTCCTAACGAACCGAATCTTAAAGCAGCACATGGCAAGCGCTCACAGAAATAAGGTGAAATGTAAGCGGTGCCCTGAGGAATTCACGTCGTATTATCACATGCTGAGACACTTGGTGGATGCACACGATGGCGGCCACAAATGCAATCACTGTGACAAAGTCTTCATCAAGTATTCGTACAAAGTGAATCACATTCGCAGGACACACCTCAATGAGAAGAATGTGCGTTGTACATTATGTGACATGAGATTCTTTGATAGGAACCGTTTGAGGACTCACATGGTGAAACATGTTGGGGAGCGGTCGTTCCGATGTGACCATTGTGGGAAGGAGTTCCTCAGAAAGAGCAATCTACGAGGCCACGTGGCCATACATCTCAAACACGACAATGCTACTTTCATAAATACCATAGGAACGTTCGCCAGCTTCTTGAAAAAGTACTACATCGAGAATCGTTTAATTTCAGATGAATCGCCCGCCCCCCTGGTCGACCGAATATCATCTGTGCGAAGGAGGGAAAActtgaaaattatatttgataACACATCGGTAATCCCCTTCAAATGGCGCGGATCGCACATATGTTTCTATTGTAGCACCCCCGTCCACGATTACATAGAGTTCCGAAAGCATACCAAATCTCACGGCCAGTGCAGCACCAAACACTACGCGATGAAAAAATTAAAAGGCAACGGGCTCTCGATCAATGTTGACGTATCGGAGATCGCGTGCGAGCTTTGCGAACGCCAGTTCAAAAGCTTAGACGTAATCGTGGAACACTTGATACACGAGCATAGCTTGTTGTACGACAGAAACGTTTATAGCGAAATACTTGAGTACAGATTGGTCGATATGCGTTGCACTCACTGCGAGCAACAGTTTCAGGCGTTCAGACATCTAGTCTCGCATGTCAACATGCATCATCCGCAAAACAACTTCGTGTGCCACCATTGCGGGCGCAACTTCAGTAAAAAGAGAGATATAACAAGTCACATGAACAGCTACCACCGGGTAGGAGGGTACGTTTGCAAGCAATGCGGATTAGAATGCAGCAGTCGGTACGATCTGCGGAAACACACAGCGCACGCACATCTCACTCGATGCCACGTGTGCGGGAAGAAGTTCCGATATCTGAACAAATTGTTTAGCCACGTGAAACTTGAACATCCAAACGACGATAACAAAACATGTAACTATTGTATGAAGGAGTTCCATTCCGCGGTCGGCCTCAAAATGCACATGTTCAAATGCAAAGTGAAAGCACCCTTGCAAGACGACACCGATACCGTACCGGTCTCTGTTAACAAGGACTCTAGTTCATCGAGAACTCATGAACAAATTGTACGCATACGTCAAAATATTCAATGCGTCCTCAACATGTCAACCGCGGTACCTTTTCGTTTCAGAGTCAAATTCTCATGCTTCTACTGCTCTCTCAAATACGACGACTACGAAGTTCTCAAAACGCACACACGTACAGAACACCCTGTGTGCGATATAAAAAGCAAATCTATGAAGAAATGTAAGGGAAAACGCACGTTCGTAAGAGTTGACATAGCTTCCCTAGCTTGCAAAGTGTGTTCAGCTCCCATGCCTGATTTGGAACACTTTATCGATCACGTGATTATCGCCCACGATGCGGATTACGACAAAACCGTCAGCTTAGGAACTTGCTTCGAGGCTTACCGTCTAGTCAAAGGTAACATTCCATGCTTGGAGTGTCCTAAAGTGTTCCGGTATTTGAACACGATGCTCAGGCATTTCAATTTGGAGCACAGCAACAACAACGTTATATGCGATTACTGCGGTCGTGGCTTCCGCAGCACCACCAACCTAAAGATGCATCTCCAAAACGCTCACACGGGCTCTTGCGAATGCAAGATTTGCAACGCTAAGTTCAAGAACCAACCAGTTTTGGTTCGACACATGGCGAAGAGCCACAACGAAAAGAGTTTCAAATGCAACGTATGCTCTGATATGTTCGAATCGGCGTATCAAAGGCAAACCCACTTGATCAAAGTTCACGGGATCGGTCACAAATGCGAGTACTGCGGTAAAATGTTCACGAAGCATTCGTTCATGGACTCTCACGTGAGACGGACGCATTTGAAGGAGAAAAATGTCACGTGCTCCGTGTGCAATGATAAATTCTTCGACAATCACTTGCTGAAGATGCATATGGTCAAACACGATGGCGAGAGGAAGTTTAATTGCGATTTGTGCGGCAAAACGTTTCTAAGGCAGAAGAATTTACGAACTCATATGGACACGCATAAGAAGTACGGCTTTGTGCAGTAA
- Protein Sequence
- MDNHYKNANESIQKCRPNEIRWRNLQTLVNNSSVMPFKWKGKYLCFFCGMSTGDHRELKEHVKTHIPCSVASLVEAKLIRRGSVIKIDVSDVICNVCSEEFSDIEHLILHLKSKHKLWYREGALTLTAYRLTDLKCLICDTTFKLFDLMQHMKKTHPDNPCQCNTCIQKHNNLLDKKLHTKYKDYSCSKCSLPFPCLQDFKKHAKKNHHSKCNLCSLSFLTHQHRMLHINTDHELENGGQCKFCHKQLYNKQSILSHAFRCNVDASKDEDLDAVNNLNTRKVTQQYRENIFKIMDSTTAMPFKFLTSKFRCFYCPKDFTTCVELKQHTKKHTEYESVLKTIRIRGKSEGVQIKLDISQLYCKRCFLECHDFDTMIKHLESEHNTVFTKDILGIFQCFRLVHDKFPCMYCDIEFTYFSMLLRHVYGVHNAGYEYVCSYCGKPFNSSPNLRRHMTLHHATDRLKCSVCDKVFLTNRILKQHMASAHRNKVKCKRCPEEFTSYYHMLRHLVDAHDGGHKCNHCDKVFIKYSYKVNHIRRTHLNEKNVRCTLCDMRFFDRNRLRTHMVKHVGERSFRCDHCGKEFLRKSNLRGHVAIHLKHDNATFINTIGTFASFLKKYYIENRLISDESPAPLVDRISSVRRRENLKIIFDNTSVIPFKWRGSHICFYCSTPVHDYIEFRKHTKSHGQCSTKHYAMKKLKGNGLSINVDVSEIACELCERQFKSLDVIVEHLIHEHSLLYDRNVYSEILEYRLVDMRCTHCEQQFQAFRHLVSHVNMHHPQNNFVCHHCGRNFSKKRDITSHMNSYHRVGGYVCKQCGLECSSRYDLRKHTAHAHLTRCHVCGKKFRYLNKLFSHVKLEHPNDDNKTCNYCMKEFHSAVGLKMHMFKCKVKAPLQDDTDTVPVSVNKDSSSSRTHEQIVRIRQNIQCVLNMSTAVPFRFRVKFSCFYCSLKYDDYEVLKTHTRTEHPVCDIKSKSMKKCKGKRTFVRVDIASLACKVCSAPMPDLEHFIDHVIIAHDADYDKTVSLGTCFEAYRLVKGNIPCLECPKVFRYLNTMLRHFNLEHSNNNVICDYCGRGFRSTTNLKMHLQNAHTGSCECKICNAKFKNQPVLVRHMAKSHNEKSFKCNVCSDMFESAYQRQTHLIKVHGIGHKCEYCGKMFTKHSFMDSHVRRTHLKEKNVTCSVCNDKFFDNHLLKMHMVKHDGERKFNCDLCGKTFLRQKNLRTHMDTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -