Vcam023848.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596066.1:8971684-8977797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.04 3.1 9.1 0.0 3 23 108 128 107 128 0.97 2 13 3.7e-05 0.0028 18.6 0.4 2 23 128 149 127 149 0.95 3 13 1.7e-07 1.3e-05 26.0 2.2 1 23 155 177 155 177 0.96 4 13 0.015 1.1 10.5 3.7 1 23 182 204 182 204 0.96 5 13 0.00033 0.026 15.6 2.1 1 23 210 232 210 232 0.97 6 13 3.2e-05 0.0025 18.8 0.3 1 23 238 260 238 260 0.97 7 13 0.00096 0.075 14.2 4.1 1 23 266 288 266 288 0.94 8 13 1.1e-05 0.00086 20.3 1.3 2 23 313 334 313 334 0.98 9 13 7e-06 0.00054 20.9 4.0 1 23 340 362 340 362 0.98 10 13 3.8e-05 0.0029 18.6 0.4 2 23 369 390 368 390 0.94 11 13 9.9e-06 0.00077 20.4 0.2 1 23 396 419 396 419 0.95 12 13 9.6e-06 0.00075 20.5 1.6 1 23 425 447 425 447 0.97 13 13 0.034 2.6 9.3 0.8 1 21 453 473 453 474 0.95
Sequence Information
- Coding Sequence
- ATGCTGTGTGCGGTGTGCTTGTCGCAGCTGCGGCACTGCCGAGTGTTCGCTGACCGCGCACTGCAGGCCGACCGCCTCTTGCGACAACTCATATCTACTGACGAGATGACACCGGACGCGGTCGCCGGGTTGCCAGTGTCGGAGACACGACACCTCTCTGTCAGCACACTGCCTCCCGTGACGATCGGGGGCCACTCATCTGCAGCGACTGTTGAAACGACCATCAAAGAGGAAGCTACAGAAGCTTCGTTCGCCGAACGAGAGGCGACGGAATGTGAACAACTACCCGATGAGAAGGAACGCTCCGAGTCGTGTCGCGACTGCGACGAGTGCGGGCTCCGGTCGGGGACGGAGGCCTCGCTCGTTGCGCACCGGAACTTGCACTGCCGGCAGTGCGACAAGaagTTCGCGTCCGCGAGCAGTCTGCGCGCGCACGCGTCCGTGCACTCGGACGTCCGGCCGCACGCGTGTCCTGTGTGCGGTCGCGCTTTCCGCCACAAGTCGTATCTGCAGAGCCACCTGCGAGTCCACGACCTCAAGCCGCACTACTGCCGCGTGTGTCACGTGGGGTTCGCGCGCGCCGACTcacttcacacacacacactcctCCACTCCACACACAAACCGTTCGCGTGCGAACGTTGCCACAAGACCTTCCTGTACAGGAGCGCGCTGGCCAGACACGCGCGGACTCACACCGGCGAGAAACCTTTCGCGTGCAAGTCTTGCGATGCGACGTTCGCGACCCGTAGCGCGCTCGCGAACCACTCGCGGACTCACACCGGCGAGAAGCCTCACGCGTGCGAGTCGTGCGACGCGACGTTCAGCCACGCGGGCAACCTGCGCCGCCACTCGCACTCACATCTCGTCGGTGCGAGCGACCCGCGGCCGCGGCCCACGGACACGCAACAGACGGCGAAGACGCGCCACCGGCCGCGCTGCGAGCTATGCGACTTGACGTTGGCGTCTAACTCGCACCTGACCGTGCACATGCGGACTCACACCGGCGAGAAGCCGTTCTCGTGCGAGACTTGCCTGCGATCGTTCAAGAGCAAGTCGACGCTGAAGAGTCACCGCCGCACTCACACCGGGGAGAAGGTTTGCTCGTGCGAGGTCTGCGGGCAGGCGTTCTCGCAGAGCGGTAGTCTCGGGAAGCACATGGTGTTGCACAGCGGAGCGTTGCCTCACGCGTGTCCGCTGTGCGACAAGGCGTACAAGCAGAGCGGACAGCTGTCGGCGCACGTGAGGAACGTCCACGAAGGAGTGAAGCGGTTCTCGTGCGAGCAATGCGGCGCGCGCTTCACGGCGCGCTCGCATCTCAAGCGGCATCTGAACGCTCACGCCGGACTCAAGCCGTATTCCTGTCTCAAGTGTAACGGTAGCTTCAGTACCCGCACTATCATGAAACGGCATATGAACAATTCTTGTAAATGGTCACCGACTGCTTCGGTACAGACAAACCTCACTTAG
- Protein Sequence
- MLCAVCLSQLRHCRVFADRALQADRLLRQLISTDEMTPDAVAGLPVSETRHLSVSTLPPVTIGGHSSAATVETTIKEEATEASFAEREATECEQLPDEKERSESCRDCDECGLRSGTEASLVAHRNLHCRQCDKKFASASSLRAHASVHSDVRPHACPVCGRAFRHKSYLQSHLRVHDLKPHYCRVCHVGFARADSLHTHTLLHSTHKPFACERCHKTFLYRSALARHARTHTGEKPFACKSCDATFATRSALANHSRTHTGEKPHACESCDATFSHAGNLRRHSHSHLVGASDPRPRPTDTQQTAKTRHRPRCELCDLTLASNSHLTVHMRTHTGEKPFSCETCLRSFKSKSTLKSHRRTHTGEKVCSCEVCGQAFSQSGSLGKHMVLHSGALPHACPLCDKAYKQSGQLSAHVRNVHEGVKRFSCEQCGARFTARSHLKRHLNAHAGLKPYSCLKCNGSFSTRTIMKRHMNNSCKWSPTASVQTNLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -